Wall clock time and date at job start Tue Mar 31 2020 22:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47153 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47050 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99913 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46992 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00323 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99764 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00319 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99824 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00335 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00254 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46869 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47053 * 120.00090 * 17 15 13 20 20 H 1.48502 * 109.46835 * 240.00003 * 17 15 13 21 21 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 22 22 C 1.34773 * 119.99910 * 275.00232 * 21 2 1 23 23 O 1.21500 * 120.00057 * 359.97438 * 22 21 2 24 24 C 1.48278 * 120.00212 * 179.97438 * 22 21 2 25 25 C 1.47489 * 128.71815 * 179.69661 * 24 22 21 26 26 N 1.30646 * 102.71769 * 179.85275 * 25 24 22 27 27 O 1.20833 * 109.61861 * 0.42817 * 26 25 24 28 28 N 1.20901 * 115.90877 * 359.69661 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 35 35 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 36 36 H 1.09006 * 109.47271 * 300.00048 * 6 5 4 37 37 H 1.09002 * 109.47196 * 60.00425 * 6 5 4 38 38 H 1.09006 * 109.46634 * 299.99903 * 7 6 5 39 39 H 1.08993 * 109.47376 * 59.99848 * 7 6 5 40 40 H 1.00905 * 111.00349 * 56.04504 * 8 7 6 41 41 H 1.09000 * 109.46946 * 300.00137 * 9 8 7 42 42 H 1.08997 * 109.46771 * 60.00000 * 9 8 7 43 43 H 0.97004 * 120.00484 * 0.02562 * 12 10 9 44 44 H 0.97005 * 120.00353 * 179.97438 * 16 15 13 45 45 H 0.96995 * 120.00293 * 94.99410 * 21 2 1 46 46 H 1.08004 * 128.63821 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3351 -2.5625 7 6 5.5998 -1.2277 -2.6266 8 7 6.0894 -1.9203 -3.8260 9 6 7.5531 -1.8372 -3.9212 10 6 8.0175 -2.5577 -5.1607 11 8 7.2088 -3.0877 -5.8930 12 7 9.3314 -2.6130 -5.4555 13 6 9.7540 -3.2679 -6.5833 14 1 9.0339 -3.7392 -7.2358 15 6 11.1085 -3.3245 -6.8875 16 7 11.9847 -2.7507 -6.0940 17 14 11.6842 -4.2163 -8.4247 18 1 10.5098 -4.7733 -9.1429 19 1 12.4008 -3.2639 -9.3105 20 1 12.5996 -5.3213 -8.0423 21 7 2.0184 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8585 1.1607 2.4116 24 6 2.6407 -0.7173 3.5680 25 6 2.8592 -0.1746 4.9219 26 7 3.2912 -1.2155 5.5827 27 8 3.3454 -2.1708 4.8447 28 7 2.9994 -1.9763 3.7027 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9995 -1.0729 -0.4259 36 1 3.7866 -2.3854 -2.5183 37 1 3.6404 -0.8760 -3.4505 38 1 5.8885 -0.1775 -2.6706 39 1 6.0341 -1.6870 -1.7387 40 1 5.6519 -1.5548 -4.6586 41 1 7.8549 -0.7911 -3.9739 42 1 8.0012 -2.3009 -3.0424 43 1 9.9782 -2.1894 -4.8697 44 1 12.9304 -2.7905 -6.3061 45 1 2.2490 -1.6317 1.1527 46 1 2.6996 0.8322 5.2787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175795709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:37 Heat of formation + Delta-G solvation = 1.827615 kcal Electronic energy + Delta-G solvation = -27605.879566 eV Core-core repulsion = 23341.341782 eV Total energy + Delta-G solvation = -4264.537783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -47.98738 -41.08500 -40.17709 -38.18872 -37.04809 -35.95245 -35.85700 -35.56358 -34.35369 -33.27492 -32.14737 -29.70932 -27.66904 -27.23975 -25.83919 -25.17123 -23.82473 -22.45373 -22.05265 -21.67324 -21.03539 -20.10552 -19.91368 -19.62046 -18.69310 -17.85292 -17.52859 -17.11267 -16.56364 -16.30913 -16.09525 -15.98145 -15.86605 -15.36560 -15.28321 -15.18118 -14.63624 -14.45561 -14.04761 -13.91389 -13.65383 -13.51266 -13.34581 -13.15557 -13.00894 -12.96794 -12.79870 -12.46343 -12.42184 -12.35245 -12.22105 -12.11493 -11.90785 -11.84884 -11.66669 -11.54306 -11.52758 -11.40194 -10.37781 -10.30084 -10.03281 -9.33434 -8.48049 -5.97169 -0.38931 0.29424 1.36280 1.41633 1.50840 1.56141 1.76476 2.03000 2.28537 2.32654 2.43711 2.87768 2.91391 3.19022 3.47905 3.65485 3.71750 3.79349 3.96897 4.02606 4.26785 4.28544 4.30426 4.41753 4.44924 4.48466 4.53982 4.60817 4.69310 4.76919 4.86910 4.88798 4.97936 5.00661 5.19242 5.27650 5.30852 5.39929 5.45066 5.49091 5.89211 6.10775 6.18123 6.41571 6.58359 6.80607 7.10981 7.31391 7.54212 8.09286 8.69589 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.001521 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.085066 B =18404.143876 C =19687.482430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.084 0.916 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.110 4.110 7 C 0.058 3.942 8 N -0.686 5.686 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.921 5.921 17 Si 0.995 3.005 18 H -0.273 1.273 19 H -0.270 1.270 20 H -0.271 1.271 21 N -0.694 5.694 22 C 0.609 3.391 23 O -0.541 6.541 24 C -0.053 4.053 25 C 0.049 3.951 26 N -0.363 5.363 27 O 0.339 5.661 28 N -0.322 5.322 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.344 0.656 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.415 0.585 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.501 8.170 21.443 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.070 4.070 8 N -0.318 5.318 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.211 5.211 13 C -0.464 4.464 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.562 5.562 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.196 1.196 21 N -0.346 5.346 22 C 0.391 3.609 23 O -0.417 6.417 24 C -0.219 4.219 25 C -0.136 4.136 26 N -0.088 5.088 27 O 0.113 5.887 28 N -0.042 5.042 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.252 0.748 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.679 6.968 21.559 31.357 hybrid contribution 0.904 1.102 -0.901 1.686 sum -20.775 8.069 20.658 30.388 Atomic orbital electron populations 1.22158 0.93998 1.02949 1.02827 1.21210 0.94737 0.97203 0.82930 0.89812 1.21881 0.95207 1.01938 0.96743 1.21495 0.95565 1.00645 0.97279 1.21485 0.93194 1.01440 0.98625 1.22091 0.96580 0.95916 0.92422 1.60110 1.03687 1.61428 1.06572 1.21534 0.90361 0.99026 0.95914 1.20888 0.82440 0.85100 0.89139 1.90482 1.54258 1.52039 1.54185 1.41952 1.06319 1.49220 1.23571 1.19725 0.92419 1.32086 1.02217 0.90266 1.26071 0.95140 0.98071 1.02070 1.69678 1.02942 1.44518 1.39018 0.84844 0.78050 0.78001 0.77269 1.19749 1.19514 1.19596 1.46011 1.64926 1.14875 1.08749 1.16523 0.77688 0.85322 0.81343 1.90842 1.51039 1.15381 1.84436 1.26284 1.06758 0.90191 0.98618 1.28256 0.96264 1.02061 0.87064 1.75115 1.17487 0.96573 1.19625 1.85111 1.59165 1.32646 1.11742 1.75381 1.10208 1.17459 1.01123 0.89819 0.91461 0.93454 0.90079 0.88671 0.91829 0.92022 0.91571 0.91692 0.94745 0.91005 0.83768 0.91744 0.88055 0.76977 0.91263 0.74834 0.72942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 71.98 0.68 -0.82 16 2 C 0.14 1.48 2.57 44.99 0.12 1.60 16 3 H 0.08 1.11 7.58 -2.39 -0.02 1.09 16 4 C -0.12 -1.06 4.75 30.59 0.15 -0.91 16 5 C -0.11 -1.38 5.10 30.59 0.16 -1.22 16 6 C -0.11 -1.88 5.47 30.59 0.17 -1.71 16 7 C 0.06 1.30 5.69 86.30 0.49 1.79 16 8 N -0.69 -21.61 6.13 -517.93 -3.17 -24.79 16 9 C 0.06 2.23 6.17 85.56 0.53 2.76 16 10 C 0.44 21.10 7.82 87.66 0.69 21.79 16 11 O -0.62 -34.97 15.78 -3.05 -0.05 -35.02 16 12 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 16 13 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 14 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 15 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 16 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 17 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 N -0.69 -7.90 4.53 -444.99 -2.01 -9.91 16 22 C 0.61 9.22 7.81 86.92 0.68 9.90 16 23 O -0.54 -11.01 16.71 -3.71 -0.06 -11.07 16 24 C -0.05 -0.72 7.56 44.29 0.34 -0.38 16 25 C 0.05 0.52 12.63 87.31 1.10 1.63 16 26 N -0.36 -4.89 12.22 -61.44 -0.75 -5.64 16 27 O 0.34 4.79 11.65 140.86 1.64 6.44 16 28 N -0.32 -4.55 12.13 -52.05 -0.63 -5.19 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.34 11.28 8.43 -89.69 -0.76 10.53 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 44 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 45 H 0.41 3.78 8.46 -92.71 -0.78 3.00 16 46 H 0.25 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -71.69 399.94 0.78 -70.91 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -1.24 Total: 34.53 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.37 Total: 15.73 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -7.91 Total: -126.59 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: 1.53 Total: -39.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.69 0.78 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175795709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.739 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds