Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.99624 * 2 1 4 4 C 1.54329 * 109.77473 * 121.16483 * 2 1 3 5 5 H 1.09009 * 110.66844 * 215.87436 * 4 2 1 6 6 N 1.46503 * 110.85206 * 339.02867 * 4 2 1 7 7 C 1.36935 * 119.99678 * 200.14880 * 6 4 2 8 8 H 1.08005 * 120.00215 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99771 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00125 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46981 * 90.00140 * 11 9 7 13 13 H 1.48502 * 109.47297 * 209.99686 * 11 9 7 14 14 H 1.48493 * 109.47133 * 330.00288 * 11 9 7 15 15 C 1.55159 * 103.02245 * 97.49837 * 4 2 1 16 16 C 1.54910 * 101.58155 * 35.30330 * 15 4 2 17 17 N 1.47019 * 109.88284 * 238.90296 * 2 1 3 18 18 C 1.34784 * 125.64840 * 59.56182 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 C 1.53001 * 109.47176 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47362 * 179.97438 * 21 20 18 23 23 N 1.46497 * 109.47305 * 179.97438 * 22 21 20 24 24 C 1.36380 * 125.96403 * 269.69085 * 23 22 21 25 25 O 1.35633 * 125.98539 * 0.03697 * 24 23 22 26 26 N 1.30901 * 108.02347 * 179.88466 * 24 23 22 27 27 N 1.40118 * 107.94060 * 0.37386 * 26 24 23 28 28 C 1.30905 * 107.93870 * 359.76399 * 27 26 24 29 29 O 1.35628 * 125.98730 * 179.97438 * 28 27 26 30 30 H 1.08993 * 109.47184 * 179.63924 * 1 2 3 31 31 H 1.08997 * 109.47190 * 299.64700 * 1 2 3 32 32 H 1.09003 * 109.46714 * 59.64018 * 1 2 3 33 33 H 0.96998 * 120.00116 * 20.14829 * 6 4 2 34 34 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00081 * 277.23050 * 15 4 2 36 36 H 1.08998 * 111.03932 * 153.39244 * 15 4 2 37 37 H 1.09002 * 110.36832 * 204.15743 * 16 15 4 38 38 H 1.08998 * 110.46009 * 81.87490 * 16 15 4 39 39 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 40 40 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 41 41 H 1.09004 * 109.46992 * 299.99543 * 21 20 18 42 42 H 1.09003 * 109.47284 * 59.99343 * 21 20 18 43 43 H 1.08996 * 109.47024 * 300.00117 * 22 21 20 44 44 H 1.08997 * 109.46885 * 59.99795 * 22 21 20 45 45 H 0.96700 * 113.99743 * 89.99795 * 25 24 23 46 46 H 0.96694 * 114.00417 * 270.01975 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9601 -0.2828 1.6226 6 7 1.0256 -0.8101 2.2863 7 6 1.3837 -1.0487 3.5862 8 1 2.4229 -1.1941 3.8422 9 6 0.4110 -1.1046 4.5750 10 7 -0.8554 -0.9278 4.2630 11 14 0.8994 -1.4308 6.3483 12 1 1.1680 -0.1407 7.0331 13 1 -0.2049 -2.1396 7.0435 14 1 2.1233 -2.2712 6.3781 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8466 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5728 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9216 -0.6218 -4.9297 22 6 2.5170 -1.4549 -6.0666 23 7 2.0955 -0.8965 -7.3537 24 6 0.9764 -1.2460 -8.0505 25 8 0.0588 -2.1706 -7.6728 26 7 0.9414 -0.5303 -9.1460 27 7 2.0731 0.2959 -9.1582 28 6 2.7567 0.0593 -8.0672 29 8 3.9192 0.6593 -7.7093 30 1 -0.3633 -1.0276 -0.0065 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 0.0923 -0.6798 2.0564 34 1 -1.5352 -0.9673 4.9539 35 1 1.4521 -2.7778 0.6579 36 1 3.1325 -2.6598 1.2790 37 1 2.7177 -2.7049 -1.3932 38 1 3.9125 -1.5595 -0.7133 39 1 3.4492 -1.1857 -3.5197 40 1 2.0109 -2.2343 -3.5035 41 1 0.8338 -0.6411 -4.9958 42 1 2.2724 0.4070 -5.0114 43 1 3.6047 -1.4352 -6.0003 44 1 2.1666 -2.4837 -5.9851 45 1 -0.6654 -1.8119 -7.1419 46 1 4.7109 0.2041 -8.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179032343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -3.170567 kcal Electronic energy + Delta-G solvation = -29311.424468 eV Core-core repulsion = 25046.669947 eV Total energy + Delta-G solvation = -4264.754521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66339 -40.19341 -38.59758 -37.83847 -37.50378 -36.01214 -34.28468 -32.86212 -31.64631 -30.80230 -29.97761 -29.18529 -27.34864 -25.31191 -23.91280 -23.18638 -23.13449 -22.40928 -21.98287 -19.74469 -19.25569 -19.12618 -18.65444 -17.64106 -17.21833 -17.10050 -16.58618 -16.29902 -15.83517 -15.40142 -15.20705 -14.63984 -14.54820 -14.08028 -13.79850 -13.48114 -13.41447 -13.17805 -13.02437 -12.84381 -12.60844 -12.52017 -12.31619 -12.07610 -11.86582 -11.66488 -11.60316 -11.42968 -11.29676 -11.04636 -10.91165 -10.87670 -10.55410 -10.43345 -10.30123 -10.06849 -9.84344 -9.82484 -9.61388 -9.02312 -8.52309 -7.10061 -5.88446 -3.18699 1.10888 1.31188 1.83054 2.63601 2.81509 2.97308 3.36096 3.37448 3.41507 3.43255 3.93671 4.15240 4.42646 4.48767 4.62203 4.69188 4.74971 4.85207 4.85585 4.92354 5.09320 5.17045 5.22340 5.29202 5.44484 5.49073 5.53289 5.56095 5.67972 5.71871 5.73277 5.94137 6.02303 6.13310 6.22085 6.46545 6.46741 6.58909 6.60965 6.73828 6.88518 6.89431 7.48699 7.59392 7.64645 8.20146 8.30022 9.41633 9.96125 10.30859 11.33902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.001899 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.641922 B =14744.212229 C =14996.161945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.154 4.154 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.543 6.543 20 C -0.132 4.132 21 C -0.119 4.119 22 C 0.100 3.900 23 N -0.510 5.510 24 C 0.408 3.592 25 O -0.437 6.437 26 N -0.297 5.297 27 N -0.298 5.298 28 C 0.407 3.593 29 O -0.433 6.433 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.391 0.609 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.415 0.585 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 -4.717 -21.305 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.421 6.421 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.023 4.023 23 N -0.230 5.230 24 C 0.098 3.902 25 O -0.237 6.237 26 N -0.141 5.141 27 N -0.142 5.142 28 C 0.097 3.903 29 O -0.233 6.233 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.661 -3.602 -22.713 24.944 hybrid contribution 0.486 -0.942 2.553 2.764 sum 10.147 -4.544 -20.160 23.022 Atomic orbital electron populations 1.21993 0.94525 1.02381 1.02698 1.21839 0.95445 0.95745 0.84520 0.91089 1.21176 0.93235 0.92018 0.87439 0.91975 1.42671 1.05110 1.85295 1.03015 1.19223 0.92991 1.41446 0.84005 0.91056 1.24771 0.95298 1.02412 0.98212 1.69658 0.99292 1.56198 1.32664 0.86170 0.77205 0.77774 0.84865 1.21630 1.21742 1.20715 1.23555 1.01706 1.01378 0.92887 1.22396 0.94444 0.88366 0.97410 1.48642 1.49936 1.30600 1.05076 1.20061 0.81086 0.85093 0.82446 1.90708 1.38864 1.29256 1.83286 1.21515 1.02568 1.00581 0.92633 1.21672 1.02161 1.00461 0.91460 1.22031 1.01702 0.98797 0.79746 1.47151 1.22115 1.33003 1.20692 1.21346 0.86472 0.92459 0.89920 1.84922 1.35656 1.29642 1.73512 1.78381 1.13361 1.06354 1.16045 1.78375 1.02665 1.18693 1.14490 1.21326 0.90861 0.88726 0.89369 1.84997 1.12207 1.49103 1.77018 0.92547 0.90220 0.92198 0.77098 0.93324 0.90648 0.90547 0.91373 0.91602 0.88601 0.88562 0.90545 0.89901 0.88334 0.87923 0.72606 0.73087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 7.93 37.16 0.29 -2.54 16 2 C 0.13 2.12 3.49 -66.95 -0.23 1.89 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.12 3.45 -66.09 -0.23 2.90 16 5 H 0.06 1.12 8.12 -51.92 -0.42 0.70 16 6 N -0.72 -16.68 5.02 -51.64 -0.26 -16.94 16 7 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 11 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C -0.15 -2.27 6.77 -24.58 -0.17 -2.44 16 16 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 17 N -0.61 -8.18 3.08 -163.01 -0.50 -8.68 16 18 C 0.52 6.76 7.63 -10.99 -0.08 6.67 16 19 O -0.54 -9.12 14.87 5.56 0.08 -9.04 16 20 C -0.13 -0.96 4.71 -27.89 -0.13 -1.09 16 21 C -0.12 -0.86 4.83 -26.73 -0.13 -0.99 16 22 C 0.10 0.48 6.01 -4.04 -0.02 0.46 16 23 N -0.51 -3.94 2.76 -120.06 -0.33 -4.27 16 24 C 0.41 3.79 9.15 -88.81 -0.81 2.97 16 25 O -0.44 -2.88 13.57 -18.60 -0.25 -3.14 16 26 N -0.30 -3.68 12.72 29.66 0.38 -3.30 16 27 N -0.30 -3.67 12.72 29.65 0.38 -3.29 16 28 C 0.41 3.71 9.15 -88.81 -0.81 2.90 16 29 O -0.43 -2.69 13.58 -18.58 -0.25 -2.95 16 30 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.08 1.58 6.73 -51.93 -0.35 1.23 16 32 H 0.06 1.08 6.74 -51.93 -0.35 0.73 16 33 H 0.39 9.67 4.94 -40.82 -0.20 9.47 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.57 7.48 -51.93 -0.39 0.18 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.52 7.85 -51.93 -0.41 0.11 16 41 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.41 0.90 9.06 45.56 0.41 1.32 16 46 H 0.41 0.18 9.06 45.56 0.41 0.60 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -36.79 384.92 -6.91 -43.69 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.06 Total: 7.10 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -2.59 Total: 4.85 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.39 Total: -62.74 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.42 Total: -15.12 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.79 -6.91 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179032343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.524 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds