Wall clock time and date at job start Tue Mar 31 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.99624 * 2 1 4 4 C 1.54329 * 109.77473 * 121.16483 * 2 1 3 5 5 H 1.09009 * 110.66844 * 215.87436 * 4 2 1 6 6 N 1.46503 * 110.85206 * 339.02867 * 4 2 1 7 7 C 1.36935 * 119.99678 * 200.14880 * 6 4 2 8 8 H 1.08005 * 120.00215 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99771 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00125 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46981 * 90.00140 * 11 9 7 13 13 H 1.48502 * 109.47297 * 209.99686 * 11 9 7 14 14 H 1.48493 * 109.47133 * 330.00288 * 11 9 7 15 15 C 1.55159 * 103.02245 * 97.49837 * 4 2 1 16 16 C 1.54910 * 101.58155 * 35.30330 * 15 4 2 17 17 N 1.47019 * 109.88284 * 238.90296 * 2 1 3 18 18 C 1.34784 * 125.64840 * 59.56182 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 C 1.53001 * 109.47176 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47362 * 179.97438 * 21 20 18 23 23 N 1.46497 * 109.47305 * 179.97438 * 22 21 20 24 24 C 1.36380 * 125.96403 * 269.69085 * 23 22 21 25 25 O 1.35633 * 125.98539 * 0.03697 * 24 23 22 26 26 N 1.30901 * 108.02347 * 179.88466 * 24 23 22 27 27 N 1.40118 * 107.94060 * 0.37386 * 26 24 23 28 28 C 1.30905 * 107.93870 * 359.76399 * 27 26 24 29 29 O 1.35628 * 125.98730 * 179.97438 * 28 27 26 30 30 H 1.08993 * 109.47184 * 179.63924 * 1 2 3 31 31 H 1.08997 * 109.47190 * 299.64700 * 1 2 3 32 32 H 1.09003 * 109.46714 * 59.64018 * 1 2 3 33 33 H 0.96998 * 120.00116 * 20.14829 * 6 4 2 34 34 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00081 * 277.23050 * 15 4 2 36 36 H 1.08998 * 111.03932 * 153.39244 * 15 4 2 37 37 H 1.09002 * 110.36832 * 204.15743 * 16 15 4 38 38 H 1.08998 * 110.46009 * 81.87490 * 16 15 4 39 39 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 40 40 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 41 41 H 1.09004 * 109.46992 * 299.99543 * 21 20 18 42 42 H 1.09003 * 109.47284 * 59.99343 * 21 20 18 43 43 H 1.08996 * 109.47024 * 300.00117 * 22 21 20 44 44 H 1.08997 * 109.46885 * 59.99795 * 22 21 20 45 45 H 0.96700 * 113.99743 * 89.99795 * 25 24 23 46 46 H 0.96694 * 114.00417 * 270.01975 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9601 -0.2828 1.6226 6 7 1.0256 -0.8101 2.2863 7 6 1.3837 -1.0487 3.5862 8 1 2.4229 -1.1941 3.8422 9 6 0.4110 -1.1046 4.5750 10 7 -0.8554 -0.9278 4.2630 11 14 0.8994 -1.4308 6.3483 12 1 1.1680 -0.1407 7.0331 13 1 -0.2049 -2.1396 7.0435 14 1 2.1233 -2.2712 6.3781 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8466 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5728 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9216 -0.6218 -4.9297 22 6 2.5170 -1.4549 -6.0666 23 7 2.0955 -0.8965 -7.3537 24 6 0.9764 -1.2460 -8.0505 25 8 0.0588 -2.1706 -7.6728 26 7 0.9414 -0.5303 -9.1460 27 7 2.0731 0.2959 -9.1582 28 6 2.7567 0.0593 -8.0672 29 8 3.9192 0.6593 -7.7093 30 1 -0.3633 -1.0276 -0.0065 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 0.0923 -0.6798 2.0564 34 1 -1.5352 -0.9673 4.9539 35 1 1.4521 -2.7778 0.6579 36 1 3.1325 -2.6598 1.2790 37 1 2.7177 -2.7049 -1.3932 38 1 3.9125 -1.5595 -0.7133 39 1 3.4492 -1.1857 -3.5197 40 1 2.0109 -2.2343 -3.5035 41 1 0.8338 -0.6411 -4.9958 42 1 2.2724 0.4070 -5.0114 43 1 3.6047 -1.4352 -6.0003 44 1 2.1666 -2.4837 -5.9851 45 1 -0.6654 -1.8119 -7.1419 46 1 4.7109 0.2041 -8.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179032343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:11 Heat of formation + Delta-G solvation = -36.964512 kcal Electronic energy + Delta-G solvation = -29312.889883 eV Core-core repulsion = 25046.669947 eV Total energy + Delta-G solvation = -4266.219936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.29474 -41.29294 -39.11331 -39.02035 -38.02895 -36.63568 -35.91653 -33.79515 -33.09940 -32.06204 -30.68938 -30.67170 -28.07433 -26.77681 -25.44018 -24.24182 -23.82191 -23.24945 -22.60920 -20.91341 -20.00757 -19.72867 -19.56529 -19.42844 -18.17657 -17.71151 -17.32995 -17.18941 -16.64724 -16.50794 -16.32868 -15.93945 -15.66939 -15.16036 -15.00373 -14.62023 -14.49724 -14.00454 -13.87370 -13.63334 -13.56751 -13.36032 -13.32026 -13.09832 -12.93957 -12.92663 -12.89424 -12.80039 -12.51551 -12.32248 -12.09689 -12.03321 -11.92654 -11.59827 -11.51414 -11.49456 -11.07432 -10.91573 -10.75886 -10.54647 -9.63204 -9.00917 -7.94124 -5.22962 0.52565 0.75524 1.16045 1.49177 1.50451 1.58580 1.68181 1.98949 2.23498 2.57567 2.90793 3.36100 3.46523 3.52398 3.78179 3.82733 3.89642 3.93738 4.06649 4.16311 4.21477 4.30259 4.37462 4.40202 4.43342 4.44560 4.57847 4.64264 4.66427 4.70612 4.85714 4.88604 5.03064 5.07626 5.16234 5.21536 5.28477 5.34518 5.36574 5.51936 5.56232 6.24913 6.27730 6.47816 6.64708 6.81826 7.21002 7.34912 8.09461 8.32026 9.29547 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.001899 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.641922 B =14744.212229 C =14996.161945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.059 0.941 4 C 0.163 3.837 5 H 0.064 0.936 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.082 0.918 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.291 1.291 13 H -0.300 1.300 14 H -0.265 1.265 15 C -0.146 4.146 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.516 3.484 19 O -0.592 6.592 20 C -0.119 4.119 21 C -0.113 4.113 22 C 0.103 3.897 23 N -0.505 5.505 24 C 0.416 3.584 25 O -0.435 6.435 26 N -0.345 5.345 27 N -0.346 5.346 28 C 0.419 3.581 29 O -0.435 6.435 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.433 0.567 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 -7.007 -21.949 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.077 0.923 4 C 0.053 3.947 5 H 0.082 0.918 6 N -0.377 5.377 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.219 1.219 13 H -0.227 1.227 14 H -0.189 1.189 15 C -0.187 4.187 16 C -0.016 4.016 17 N -0.344 5.344 18 C 0.307 3.693 19 O -0.473 6.473 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.018 4.018 23 N -0.224 5.224 24 C 0.105 3.895 25 O -0.239 6.239 26 N -0.189 5.189 27 N -0.191 5.191 28 C 0.108 3.892 29 O -0.238 6.238 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.215 0.785 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.296 0.704 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 12.924 -5.931 -23.382 27.367 hybrid contribution -0.449 -0.180 2.741 2.783 sum 12.476 -6.111 -20.642 24.881 Atomic orbital electron populations 1.21794 0.96028 1.01286 1.00956 1.21506 0.94085 0.95597 0.85912 0.92310 1.21414 0.91863 0.94632 0.86802 0.91821 1.42868 1.05748 1.85558 1.03522 1.19644 0.93247 1.38711 0.85154 0.90016 1.25565 0.95408 1.03917 1.02121 1.69823 1.00273 1.58820 1.33325 0.85150 0.77007 0.77409 0.80234 1.21872 1.22702 1.18926 1.23354 1.01399 0.98228 0.95733 1.22562 0.95105 0.88746 0.95174 1.48710 1.50230 1.30982 1.04449 1.21195 0.80158 0.84901 0.83025 1.90697 1.41043 1.31662 1.83904 1.21561 1.04288 1.00601 0.89388 1.21559 1.01199 0.99585 0.92823 1.22255 1.03471 0.98940 0.77133 1.47208 1.21409 1.32528 1.21283 1.21370 0.86927 0.91710 0.89479 1.84897 1.35968 1.29067 1.73925 1.78245 1.14387 1.08023 1.18259 1.78242 1.03664 1.20290 1.16898 1.21349 0.91207 0.88020 0.88624 1.84971 1.12380 1.49537 1.76960 0.93238 0.92995 0.92698 0.78454 0.94165 0.92614 0.89479 0.87198 0.88643 0.85031 0.85339 0.92359 0.92649 0.85159 0.85545 0.70430 0.70095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 7.93 71.98 0.57 -4.73 16 2 C 0.13 4.40 3.49 45.35 0.16 4.56 16 3 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 4 C 0.16 5.73 3.45 46.18 0.16 5.89 16 5 H 0.06 2.22 8.12 -2.38 -0.02 2.20 16 6 N -0.73 -34.62 5.02 -317.30 -1.59 -36.21 16 7 C -0.24 -12.27 9.98 84.03 0.84 -11.43 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 10 N -0.97 -58.13 13.06 21.65 0.28 -57.84 16 11 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 15 C -0.15 -3.93 6.77 31.99 0.22 -3.71 16 16 C 0.11 1.78 6.69 86.86 0.58 2.37 16 17 N -0.61 -14.75 3.08 -788.04 -2.43 -17.17 16 18 C 0.52 11.95 7.63 87.65 0.67 12.62 16 19 O -0.59 -19.66 14.87 -3.04 -0.05 -19.71 16 20 C -0.12 -1.12 4.71 29.85 0.14 -0.98 16 21 C -0.11 -1.28 4.83 30.59 0.15 -1.14 16 22 C 0.10 0.54 6.01 86.38 0.52 1.06 16 23 N -0.50 -6.64 2.76 -755.18 -2.08 -8.72 16 24 C 0.42 7.21 9.15 179.71 1.65 8.85 16 25 O -0.44 -4.93 13.57 -89.46 -1.21 -6.15 16 26 N -0.34 -8.60 12.72 -173.65 -2.21 -10.81 16 27 N -0.35 -8.55 12.72 -173.66 -2.21 -10.76 16 28 C 0.42 7.03 9.15 179.72 1.65 8.68 16 29 O -0.43 -4.39 13.58 -89.41 -1.21 -5.61 16 30 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 31 H 0.05 2.19 6.73 -2.39 -0.02 2.18 16 32 H 0.05 2.06 6.74 -2.39 -0.02 2.05 16 33 H 0.38 19.51 4.94 -92.71 -0.46 19.05 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.11 1.05 7.48 -2.39 -0.02 1.04 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.13 0.52 7.85 -2.39 -0.02 0.50 16 41 H 0.06 0.88 8.10 -2.38 -0.02 0.86 16 42 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 43 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.43 1.17 9.06 -74.06 -0.67 0.50 16 46 H 0.44 -0.92 9.06 -74.06 -0.67 -1.59 16 Total: -1.00 -86.18 384.92 -3.68 -89.86 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.75 Total: 18.46 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 7.76 Total: 18.18 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -10.24 Total: -141.52 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -2.47 Total: -31.46 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -86.18 -3.68 -89.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179032343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.895 kcal (2) G-P(sol) polarization free energy of solvation -86.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds