Wall clock time and date at job start Tue Mar 31 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.30891 * 2 1 4 4 C 1.54387 * 110.34645 * 237.82314 * 2 1 3 5 5 N 1.48141 * 104.62167 * 217.15965 * 4 2 1 6 6 C 1.34778 * 127.84231 * 219.58762 * 5 4 2 7 7 O 1.21275 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99378 * 359.97438 * 6 5 4 9 9 N 1.46511 * 109.46797 * 180.02562 * 8 6 5 10 10 C 1.36367 * 125.96412 * 269.69292 * 9 8 6 11 11 O 1.35635 * 125.98800 * 0.03254 * 10 9 8 12 12 N 1.30906 * 108.02084 * 179.88780 * 10 9 8 13 13 N 1.40108 * 107.94236 * 0.36961 * 12 10 9 14 14 C 1.30908 * 107.94052 * 359.76496 * 13 12 10 15 15 O 1.35629 * 125.99058 * 179.97438 * 14 13 12 16 16 C 1.48151 * 104.32400 * 39.58200 * 5 4 2 17 17 C 1.54393 * 104.71948 * 320.35947 * 16 5 4 18 18 C 1.52994 * 110.34237 * 142.79448 * 17 16 5 19 19 C 1.53005 * 110.34277 * 265.05245 * 17 16 5 20 20 N 1.46497 * 109.46903 * 298.54824 * 19 17 16 21 21 C 1.36937 * 120.00074 * 179.97438 * 20 19 17 22 22 H 1.08011 * 119.99524 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00432 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99675 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99855 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.46963 * 89.99797 * 25 23 21 27 27 H 1.48497 * 109.47080 * 209.99490 * 25 23 21 28 28 H 1.48503 * 109.47129 * 330.00028 * 25 23 21 29 29 H 1.09002 * 109.47086 * 180.72046 * 1 2 3 30 30 H 1.08997 * 109.47323 * 300.72191 * 1 2 3 31 31 H 1.09003 * 109.47336 * 60.72499 * 1 2 3 32 32 H 1.09001 * 110.40911 * 98.36850 * 4 2 1 33 33 H 1.09006 * 110.50275 * 335.99364 * 4 2 1 34 34 H 1.08996 * 109.47718 * 299.99926 * 8 6 5 35 35 H 1.09002 * 109.47394 * 60.00738 * 8 6 5 36 36 H 0.96704 * 113.99481 * 90.00417 * 11 10 9 37 37 H 0.96691 * 114.00200 * 270.02675 * 15 14 13 38 38 H 1.09002 * 110.40666 * 79.20279 * 16 5 4 39 39 H 1.09002 * 110.40751 * 201.51721 * 16 5 4 40 40 H 1.09012 * 109.47456 * 61.45257 * 18 17 16 41 41 H 1.09000 * 109.47598 * 181.44951 * 18 17 16 42 42 H 1.09000 * 109.47230 * 301.45797 * 18 17 16 43 43 H 1.08995 * 109.46729 * 58.54753 * 19 17 16 44 44 H 1.08995 * 109.47274 * 178.54847 * 19 17 16 45 45 H 0.96999 * 120.00597 * 0.02562 * 20 19 17 46 46 H 0.97005 * 119.99253 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7709 -1.2252 5 7 3.2679 -1.4789 -0.7247 6 6 4.4437 -1.6617 -1.3576 7 8 5.3394 -2.2686 -0.8097 8 6 4.6452 -1.1120 -2.7462 9 7 5.9951 -1.4416 -3.2108 10 6 7.1099 -0.6748 -3.0411 11 8 7.1633 0.5259 -2.4125 12 7 8.1200 -1.3021 -3.5886 13 7 7.6402 -2.5009 -4.1323 14 6 6.3548 -2.5661 -3.8934 15 8 5.5259 -3.5748 -4.2608 16 6 2.8836 -1.9405 0.6296 17 6 2.0695 -0.7720 1.2259 18 6 0.9124 -1.3070 2.0719 19 6 2.9731 0.1304 2.0686 20 7 3.5326 -0.6411 3.1813 21 6 4.3773 -0.0392 4.0753 22 1 4.6307 1.0044 3.9604 23 6 4.9071 -0.7700 5.1300 24 7 5.7186 -0.1913 5.9896 25 14 4.4682 -2.5748 5.3291 26 1 5.4479 -3.4073 4.5857 27 1 4.5029 -2.9367 6.7689 28 1 3.1052 -2.8151 4.7908 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3634 0.5250 0.8834 31 1 -0.3634 0.5025 -0.8964 32 1 2.3383 -0.0777 -2.0213 33 1 1.3250 -1.4858 -1.5815 34 1 3.9115 -1.5522 -3.4214 35 1 4.5205 -0.0292 -2.7301 36 1 7.3432 0.4656 -1.4642 37 1 5.1230 -3.4553 -5.1316 38 1 2.2686 -2.8381 0.5649 39 1 3.7715 -2.1316 1.2323 40 1 1.3091 -1.8948 2.8999 41 1 0.3326 -0.4717 2.4644 42 1 0.2713 -1.9361 1.4543 43 1 3.7834 0.5139 1.4486 44 1 2.3903 0.9636 2.4611 45 1 3.3054 -1.5784 3.2843 46 1 6.0890 -0.7021 6.7263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183291457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:33 Heat of formation + Delta-G solvation = 11.398839 kcal Electronic energy + Delta-G solvation = -30926.486452 eV Core-core repulsion = 26662.363708 eV Total energy + Delta-G solvation = -4264.122744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52892 -40.55897 -38.60841 -38.40891 -37.30076 -35.10796 -34.54371 -33.53708 -31.77186 -30.23044 -29.77974 -28.97506 -27.07454 -25.95068 -25.71026 -23.20835 -23.01071 -22.27907 -21.24348 -20.13295 -19.14714 -18.87828 -18.60716 -18.05947 -17.40647 -16.90582 -16.46139 -16.19136 -15.68545 -15.46057 -15.01262 -14.71813 -14.49322 -14.13977 -13.97696 -13.74896 -13.46924 -13.15803 -13.08011 -12.78880 -12.74875 -12.63389 -12.31124 -12.21422 -11.85588 -11.70051 -11.61935 -11.55831 -11.39812 -10.97153 -10.84781 -10.76867 -10.72898 -10.49320 -10.32117 -10.10319 -9.88162 -9.62478 -9.60445 -8.97038 -8.92059 -7.28143 -5.80545 -3.16471 1.19422 1.48825 2.02239 2.24047 2.61696 3.00960 3.32313 3.37833 3.43583 3.50661 3.94523 4.03765 4.27853 4.43510 4.48259 4.55808 4.63274 4.94958 4.96432 4.98835 5.08016 5.09762 5.23278 5.31712 5.41287 5.45188 5.52177 5.57918 5.61571 5.63446 5.78912 5.82645 5.85721 5.96107 5.99793 6.15824 6.24205 6.40563 6.53069 6.60920 6.77304 7.05352 7.26284 7.67397 7.80756 7.93825 8.38047 9.16182 9.88684 10.07246 11.37850 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003817 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.637683 B = 7334.184269 C = 8777.123120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.614 5.614 6 C 0.516 3.484 7 O -0.516 6.516 8 C 0.089 3.911 9 N -0.498 5.498 10 C 0.421 3.579 11 O -0.439 6.439 12 N -0.293 5.293 13 N -0.295 5.295 14 C 0.414 3.586 15 O -0.433 6.433 16 C 0.111 3.889 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.175 3.825 20 N -0.753 5.753 21 C -0.246 4.246 22 H 0.089 0.911 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.420 0.580 37 H 0.408 0.592 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.360 0.640 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 -0.372 -22.720 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.105 0.895 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.301 3.699 7 O -0.391 6.391 8 C -0.039 4.039 9 N -0.219 5.219 10 C 0.111 3.889 11 O -0.240 6.240 12 N -0.137 5.137 13 N -0.139 5.139 14 C 0.104 3.896 15 O -0.232 6.232 16 C -0.011 4.011 17 C -0.082 4.082 18 C -0.193 4.193 19 C 0.047 3.953 20 N -0.399 5.399 21 C -0.376 4.376 22 H 0.107 0.893 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.710 3.290 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.280 0.720 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.055 -0.913 -22.859 25.408 hybrid contribution -1.871 -0.890 0.945 2.277 sum -12.925 -1.803 -21.914 25.506 Atomic orbital electron populations 1.21897 0.93852 1.02251 1.02025 1.22182 0.96294 0.99851 0.93288 0.89536 1.22617 0.86849 0.95536 0.97187 1.48827 1.12300 1.55594 1.18134 1.20109 0.81523 0.81000 0.87230 1.90853 1.40724 1.40762 1.66737 1.21661 0.82844 1.04254 0.95124 1.46619 1.10009 1.17668 1.47577 1.21323 0.83035 0.86186 0.98378 1.84861 1.92153 1.18344 1.28676 1.78388 1.18366 1.00289 1.16639 1.78340 1.03793 1.10311 1.21428 1.21221 0.89494 0.82553 0.96284 1.85026 1.60997 1.36156 1.41016 1.22610 1.00379 0.96097 0.81991 1.21841 0.96032 0.95455 0.94846 1.21890 0.96728 1.01277 0.99421 1.20612 0.93477 0.92681 0.88482 1.42728 1.57083 1.09731 1.30353 1.19004 1.18821 0.96527 1.03208 0.89303 1.24645 0.99215 0.97464 0.97470 1.69696 1.35572 1.35744 1.16980 0.86628 0.78081 0.87025 0.77248 1.20935 1.21581 1.20382 0.92028 0.91571 0.92802 0.90495 0.90503 0.85844 0.85232 0.71964 0.73396 0.91219 0.88548 0.92032 0.91639 0.92655 0.95822 0.95218 0.80615 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 7.94 37.16 0.30 -0.66 16 2 C -0.10 -0.83 3.31 -89.06 -0.29 -1.13 16 3 H 0.09 0.77 7.72 -51.93 -0.40 0.37 16 4 C 0.10 0.71 6.46 -2.41 -0.02 0.69 16 5 N -0.61 -6.93 3.32 -169.30 -0.56 -7.49 16 6 C 0.52 6.58 7.98 -10.99 -0.09 6.49 16 7 O -0.52 -9.51 16.70 5.56 0.09 -9.42 16 8 C 0.09 0.72 5.47 -5.19 -0.03 0.69 16 9 N -0.50 -5.64 2.25 -121.34 -0.27 -5.91 16 10 C 0.42 5.50 9.15 -88.82 -0.81 4.69 16 11 O -0.44 -4.70 13.58 -18.60 -0.25 -4.95 16 12 N -0.29 -4.60 12.72 29.65 0.38 -4.22 16 13 N -0.29 -4.50 12.72 29.66 0.38 -4.12 16 14 C 0.41 5.06 9.15 -88.81 -0.81 4.25 16 15 O -0.43 -3.79 13.58 -18.59 -0.25 -4.04 16 16 C 0.11 1.54 5.87 -2.40 -0.01 1.52 16 17 C -0.08 -1.02 0.74 -152.94 -0.11 -1.14 16 18 C -0.14 -1.63 7.09 37.15 0.26 -1.37 16 19 C 0.17 3.09 4.97 -4.04 -0.02 3.07 16 20 N -0.75 -17.14 4.58 -59.91 -0.27 -17.42 16 21 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 25 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 29 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 30 H 0.07 0.49 7.09 -51.93 -0.37 0.12 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.33 7.30 -51.93 -0.38 -0.05 16 33 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.13 0.74 7.95 -51.93 -0.41 0.33 16 36 H 0.42 3.36 9.06 45.56 0.41 3.78 16 37 H 0.41 0.86 9.06 45.56 0.41 1.27 16 38 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 39 H 0.10 1.77 6.72 -51.93 -0.35 1.42 16 40 H 0.06 0.90 7.01 -51.92 -0.36 0.54 16 41 H 0.06 0.76 7.09 -51.93 -0.37 0.39 16 42 H 0.05 0.52 6.55 -51.93 -0.34 0.18 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.36 8.08 3.85 -40.82 -0.16 7.92 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -40.41 376.61 -5.68 -46.08 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.75 Total: 6.66 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -1.89 Total: 10.22 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: 0.42 Total: -67.75 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.41 Total: -18.41 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.41 -5.68 -46.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183291457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.482 kcal (2) G-P(sol) polarization free energy of solvation -40.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds