Wall clock time and date at job start Tue Mar 31 2020 22:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.30891 * 2 1 4 4 C 1.54387 * 110.34645 * 237.82314 * 2 1 3 5 5 N 1.48141 * 104.62167 * 217.15965 * 4 2 1 6 6 C 1.34778 * 127.84231 * 219.58762 * 5 4 2 7 7 O 1.21275 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99378 * 359.97438 * 6 5 4 9 9 N 1.46511 * 109.46797 * 180.02562 * 8 6 5 10 10 C 1.36367 * 125.96412 * 269.69292 * 9 8 6 11 11 O 1.35635 * 125.98800 * 0.03254 * 10 9 8 12 12 N 1.30906 * 108.02084 * 179.88780 * 10 9 8 13 13 N 1.40108 * 107.94236 * 0.36961 * 12 10 9 14 14 C 1.30908 * 107.94052 * 359.76496 * 13 12 10 15 15 O 1.35629 * 125.99058 * 179.97438 * 14 13 12 16 16 C 1.48151 * 104.32400 * 39.58200 * 5 4 2 17 17 C 1.54393 * 104.71948 * 320.35947 * 16 5 4 18 18 C 1.52994 * 110.34237 * 142.79448 * 17 16 5 19 19 C 1.53005 * 110.34277 * 265.05245 * 17 16 5 20 20 N 1.46497 * 109.46903 * 298.54824 * 19 17 16 21 21 C 1.36937 * 120.00074 * 179.97438 * 20 19 17 22 22 H 1.08011 * 119.99524 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00432 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99675 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99855 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.46963 * 89.99797 * 25 23 21 27 27 H 1.48497 * 109.47080 * 209.99490 * 25 23 21 28 28 H 1.48503 * 109.47129 * 330.00028 * 25 23 21 29 29 H 1.09002 * 109.47086 * 180.72046 * 1 2 3 30 30 H 1.08997 * 109.47323 * 300.72191 * 1 2 3 31 31 H 1.09003 * 109.47336 * 60.72499 * 1 2 3 32 32 H 1.09001 * 110.40911 * 98.36850 * 4 2 1 33 33 H 1.09006 * 110.50275 * 335.99364 * 4 2 1 34 34 H 1.08996 * 109.47718 * 299.99926 * 8 6 5 35 35 H 1.09002 * 109.47394 * 60.00738 * 8 6 5 36 36 H 0.96704 * 113.99481 * 90.00417 * 11 10 9 37 37 H 0.96691 * 114.00200 * 270.02675 * 15 14 13 38 38 H 1.09002 * 110.40666 * 79.20279 * 16 5 4 39 39 H 1.09002 * 110.40751 * 201.51721 * 16 5 4 40 40 H 1.09012 * 109.47456 * 61.45257 * 18 17 16 41 41 H 1.09000 * 109.47598 * 181.44951 * 18 17 16 42 42 H 1.09000 * 109.47230 * 301.45797 * 18 17 16 43 43 H 1.08995 * 109.46729 * 58.54753 * 19 17 16 44 44 H 1.08995 * 109.47274 * 178.54847 * 19 17 16 45 45 H 0.96999 * 120.00597 * 0.02562 * 20 19 17 46 46 H 0.97005 * 119.99253 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7709 -1.2252 5 7 3.2679 -1.4789 -0.7247 6 6 4.4437 -1.6617 -1.3576 7 8 5.3394 -2.2686 -0.8097 8 6 4.6452 -1.1120 -2.7462 9 7 5.9951 -1.4416 -3.2108 10 6 7.1099 -0.6748 -3.0411 11 8 7.1633 0.5259 -2.4125 12 7 8.1200 -1.3021 -3.5886 13 7 7.6402 -2.5009 -4.1323 14 6 6.3548 -2.5661 -3.8934 15 8 5.5259 -3.5748 -4.2608 16 6 2.8836 -1.9405 0.6296 17 6 2.0695 -0.7720 1.2259 18 6 0.9124 -1.3070 2.0719 19 6 2.9731 0.1304 2.0686 20 7 3.5326 -0.6411 3.1813 21 6 4.3773 -0.0392 4.0753 22 1 4.6307 1.0044 3.9604 23 6 4.9071 -0.7700 5.1300 24 7 5.7186 -0.1913 5.9896 25 14 4.4682 -2.5748 5.3291 26 1 5.4479 -3.4073 4.5857 27 1 4.5029 -2.9367 6.7689 28 1 3.1052 -2.8151 4.7908 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3634 0.5250 0.8834 31 1 -0.3634 0.5025 -0.8964 32 1 2.3383 -0.0777 -2.0213 33 1 1.3250 -1.4858 -1.5815 34 1 3.9115 -1.5522 -3.4214 35 1 4.5205 -0.0292 -2.7301 36 1 7.3432 0.4656 -1.4642 37 1 5.1230 -3.4553 -5.1316 38 1 2.2686 -2.8381 0.5649 39 1 3.7715 -2.1316 1.2323 40 1 1.3091 -1.8948 2.8999 41 1 0.3326 -0.4717 2.4644 42 1 0.2713 -1.9361 1.4543 43 1 3.7834 0.5139 1.4486 44 1 2.3903 0.9636 2.4611 45 1 3.3054 -1.5784 3.2843 46 1 6.0890 -0.7021 6.7263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183291457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:32 Heat of formation + Delta-G solvation = -27.252257 kcal Electronic energy + Delta-G solvation = -30928.162489 eV Core-core repulsion = 26662.363708 eV Total energy + Delta-G solvation = -4265.798781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.42765 -41.48583 -39.63948 -39.19558 -38.10139 -36.68111 -35.44897 -34.73815 -33.43740 -31.54732 -30.74185 -29.84612 -28.20155 -26.95509 -26.65260 -24.82891 -23.92336 -23.18989 -22.46188 -21.01462 -20.21381 -19.89844 -19.71273 -19.24593 -18.49485 -17.77715 -17.39584 -17.08693 -16.64191 -16.50240 -16.35630 -16.17926 -15.53617 -15.36883 -15.03817 -14.75532 -14.64755 -14.45550 -14.04695 -13.95641 -13.61677 -13.51956 -13.42113 -13.17028 -13.08073 -12.95658 -12.70434 -12.64024 -12.59524 -12.27679 -12.15201 -11.92991 -11.86484 -11.65290 -11.62961 -11.34063 -11.18468 -11.05465 -10.83110 -10.59698 -9.85488 -9.33889 -8.09322 -5.41099 0.30139 0.70532 1.08062 1.26751 1.33157 1.34976 1.38326 1.78009 2.16324 2.40658 2.77837 3.18875 3.23176 3.39926 3.46294 3.58188 3.72617 3.90844 3.95931 4.09550 4.18544 4.19977 4.30656 4.36003 4.55569 4.60775 4.63980 4.69420 4.75956 4.84608 4.88339 4.98476 5.01511 5.11337 5.15380 5.21280 5.31048 5.39567 5.45514 5.66418 5.69910 6.11120 6.15172 6.36708 6.44061 6.73178 6.90973 7.02453 7.79543 7.96338 9.12514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003817 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.637683 B = 7334.184269 C = 8777.123120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.611 5.611 6 C 0.508 3.492 7 O -0.588 6.588 8 C 0.094 3.906 9 N -0.495 5.495 10 C 0.421 3.579 11 O -0.436 6.436 12 N -0.337 5.337 13 N -0.341 5.341 14 C 0.429 3.571 15 O -0.432 6.432 16 C 0.108 3.892 17 C -0.073 4.073 18 C -0.133 4.133 19 C 0.172 3.828 20 N -0.754 5.754 21 C -0.231 4.231 22 H 0.056 0.944 23 C -0.060 4.060 24 N -0.982 5.982 25 Si 0.944 3.056 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.245 1.245 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.430 0.570 37 H 0.438 0.562 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.009 0.991 44 H 0.029 0.971 45 H 0.364 0.636 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 -0.885 -25.807 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.021 4.021 5 N -0.344 5.344 6 C 0.296 3.704 7 O -0.468 6.468 8 C -0.031 4.031 9 N -0.215 5.215 10 C 0.110 3.890 11 O -0.239 6.239 12 N -0.181 5.181 13 N -0.185 5.185 14 C 0.119 3.881 15 O -0.236 6.236 16 C -0.015 4.015 17 C -0.075 4.075 18 C -0.190 4.190 19 C 0.046 3.954 20 N -0.400 5.400 21 C -0.362 4.362 22 H 0.074 0.926 23 C -0.252 4.252 24 N -0.633 5.633 25 Si 0.772 3.228 26 H -0.218 1.218 27 H -0.216 1.216 28 H -0.169 1.169 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.179 0.821 36 H 0.292 0.708 37 H 0.301 0.699 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.027 0.973 44 H 0.047 0.953 45 H 0.198 0.802 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.408 -1.395 -26.020 30.272 hybrid contribution -0.626 -0.632 1.887 2.085 sum -16.033 -2.026 -24.134 29.045 Atomic orbital electron populations 1.21878 0.91658 1.03142 1.02909 1.22187 0.97959 0.99221 0.91615 0.89837 1.22994 0.85472 0.96485 0.97100 1.48931 1.13272 1.55075 1.17086 1.20975 0.80791 0.79991 0.88637 1.90831 1.43068 1.44125 1.68747 1.22045 0.82121 1.06186 0.92771 1.46656 1.10805 1.16975 1.47064 1.21377 0.83385 0.86464 0.97820 1.84837 1.92149 1.17424 1.29441 1.78244 1.20225 1.01282 1.18335 1.78210 1.05755 1.10852 1.23656 1.21270 0.89307 0.82654 0.94919 1.85001 1.60366 1.34912 1.43327 1.22479 0.98462 0.97421 0.83117 1.21743 0.95132 0.94727 0.95862 1.21900 0.96687 1.01569 0.98882 1.20797 0.93758 0.93444 0.87439 1.42753 1.56365 1.10183 1.30735 1.19024 1.18421 0.95251 1.03531 0.92568 1.25420 0.99911 1.02166 0.97664 1.69869 1.37711 1.37636 1.18084 0.85573 0.79191 0.81120 0.76936 1.21837 1.21641 1.16927 0.91030 0.92576 0.90221 0.86546 0.87392 0.80817 0.82131 0.70833 0.69872 0.89276 0.93918 0.95106 0.91223 0.89083 0.97308 0.95328 0.80224 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.94 71.98 0.57 -0.53 16 2 C -0.09 -1.17 3.31 -9.78 -0.03 -1.20 16 3 H 0.08 1.17 7.72 -2.39 -0.02 1.15 16 4 C 0.10 0.82 6.46 86.53 0.56 1.38 16 5 N -0.61 -11.87 3.32 -807.94 -2.68 -14.55 16 6 C 0.51 11.85 7.98 87.66 0.70 12.55 16 7 O -0.59 -21.89 16.70 -3.01 -0.05 -21.94 16 8 C 0.09 1.13 5.47 85.63 0.47 1.60 16 9 N -0.50 -10.22 2.25 -759.24 -1.71 -11.92 16 10 C 0.42 10.82 9.15 179.72 1.65 12.46 16 11 O -0.44 -9.08 13.58 -89.48 -1.21 -10.30 16 12 N -0.34 -10.82 12.72 -173.65 -2.21 -13.03 16 13 N -0.34 -10.47 12.72 -173.65 -2.21 -12.68 16 14 C 0.43 9.86 9.15 179.71 1.65 11.51 16 15 O -0.43 -6.36 13.58 -89.42 -1.21 -7.58 16 16 C 0.11 2.81 5.87 86.54 0.51 3.32 16 17 C -0.07 -1.71 0.74 -51.17 -0.04 -1.74 16 18 C -0.13 -2.83 7.09 71.98 0.51 -2.32 16 19 C 0.17 6.07 4.97 86.38 0.43 6.50 16 20 N -0.75 -35.00 4.58 -343.45 -1.57 -36.57 16 21 C -0.23 -13.40 10.47 84.03 0.88 -12.52 16 22 H 0.06 3.56 8.06 -2.90 -0.02 3.53 16 23 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 24 N -0.98 -64.44 13.97 21.65 0.30 -64.14 16 25 Si 0.94 47.09 27.74 68.60 1.90 48.99 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 29 H 0.07 0.46 6.56 -2.39 -0.02 0.44 16 30 H 0.06 0.59 7.09 -2.39 -0.02 0.58 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.12 0.13 7.30 -2.39 -0.02 0.11 16 33 H 0.11 0.36 7.87 -2.38 -0.02 0.34 16 34 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.16 0.99 7.95 -2.39 -0.02 0.97 16 36 H 0.43 7.01 9.06 -74.05 -0.67 6.34 16 37 H 0.44 0.17 9.06 -74.06 -0.67 -0.50 16 38 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 39 H 0.04 1.59 6.72 -2.39 -0.02 1.57 16 40 H 0.03 0.84 7.01 -2.38 -0.02 0.82 16 41 H 0.07 1.42 7.09 -2.39 -0.02 1.40 16 42 H 0.09 1.29 6.55 -2.39 -0.02 1.27 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.36 16.38 3.85 -92.71 -0.36 16.02 16 46 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 Total: -1.00 -97.52 376.61 -3.03 -100.56 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.70 Total: 15.31 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 8.31 Total: 27.85 kcal Atomic # 7 Polarization: -142.82 SS G_CDS: -10.07 Total: -152.89 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.48 Total: -39.81 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.90 Total: 48.99 kcal Total: -97.52 -3.03 -100.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183291457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.304 kcal (2) G-P(sol) polarization free energy of solvation -97.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds