Wall clock time and date at job start Tue Mar 31 2020 22:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38812 * 119.99383 * 164.03306 * 6 5 4 9 9 N 1.31611 * 120.00597 * 350.53212 * 8 6 5 10 10 Si 1.86807 * 119.99635 * 170.25783 * 8 6 5 11 11 H 1.48502 * 109.46980 * 84.94616 * 10 8 6 12 12 H 1.48493 * 109.46954 * 204.94631 * 10 8 6 13 13 H 1.48497 * 109.47177 * 324.95034 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47084 * 179.97438 * 21 20 18 23 23 N 1.46503 * 109.46851 * 180.02562 * 22 21 20 24 24 C 1.36369 * 125.96063 * 269.69223 * 23 22 21 25 25 O 1.35629 * 125.99024 * 0.03458 * 24 23 22 26 26 N 1.30911 * 108.02184 * 179.88899 * 24 23 22 27 27 N 1.40115 * 107.93643 * 0.37012 * 26 24 23 28 28 C 1.30898 * 107.94437 * 359.76508 * 27 26 24 29 29 O 1.35627 * 125.99318 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 31 31 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 32 32 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 33 33 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 34 34 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 35 35 H 0.96998 * 120.00687 * 179.72516 * 9 8 6 36 36 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 37 37 H 1.09000 * 110.36876 * 265.41061 * 14 5 4 38 38 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 39 39 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 40 40 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 41 41 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 42 42 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 43 43 H 1.09004 * 109.47071 * 299.99989 * 22 21 20 44 44 H 1.08999 * 109.47128 * 60.00404 * 22 21 20 45 45 H 0.96700 * 114.00035 * 90.00406 * 25 24 23 46 46 H 0.96709 * 113.99432 * 270.02228 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2548 -2.8024 -1.0494 9 7 5.7902 -2.2313 0.0085 10 14 6.1743 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1228 -4.8155 -1.0070 13 1 5.2045 -5.1654 -2.4487 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6948 0.4672 7.3121 23 7 2.7763 -0.3567 8.5208 24 6 1.7231 -0.7602 9.2873 25 8 0.4172 -0.4698 9.0639 26 7 2.1931 -1.4796 10.2749 27 7 3.5871 -1.5332 10.1444 28 6 3.9190 -0.8489 9.0791 29 8 5.1787 -0.6617 8.6124 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0562 33 1 2.3813 -0.1004 -1.9963 34 1 1.3155 -1.4715 -1.5803 35 1 6.6622 -2.5155 0.3241 36 1 3.7960 -2.1405 1.2206 37 1 4.1945 -0.4477 0.7993 38 1 2.2480 1.0365 2.2788 39 1 3.3696 1.0180 4.7291 40 1 1.5985 1.0849 4.8940 41 1 1.6377 -1.0327 6.1829 42 1 3.4088 -1.1002 6.0184 43 1 3.6033 1.0619 7.2162 44 1 1.8322 1.1300 7.3812 45 1 -0.0397 -1.1154 8.5076 46 1 5.6178 0.1226 8.9693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207784698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:33 Heat of formation + Delta-G solvation = -5.546522 kcal Electronic energy + Delta-G solvation = -29377.741695 eV Core-core repulsion = 25112.884145 eV Total energy + Delta-G solvation = -4264.857550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.57134 -39.73306 -38.50743 -37.73291 -37.41571 -35.93266 -33.98271 -32.82484 -32.47470 -30.46314 -29.88719 -28.45702 -26.93726 -25.70482 -23.86265 -23.08977 -22.85821 -22.02134 -20.65781 -20.16371 -19.56947 -19.14262 -18.98224 -17.28202 -16.98397 -16.91171 -16.41235 -15.96463 -15.87470 -15.69627 -14.92506 -14.43554 -14.17039 -14.05871 -13.81507 -13.36584 -13.18117 -12.98701 -12.90075 -12.72923 -12.70453 -12.49196 -12.21538 -12.15721 -11.70681 -11.57392 -11.42782 -11.28282 -11.00678 -10.82092 -10.81602 -10.68622 -10.47322 -10.33983 -10.02710 -9.95350 -9.80262 -9.75220 -9.61364 -8.66046 -8.53421 -6.80007 -5.77812 -3.13773 1.19627 1.41235 1.91967 2.83235 2.90539 3.25924 3.38924 3.44810 3.46819 3.52508 4.03702 4.37253 4.48673 4.53252 4.74650 4.84268 4.89132 4.95424 4.98748 5.10421 5.22306 5.26603 5.33215 5.35489 5.49947 5.65674 5.68932 5.78493 5.85792 5.87766 5.95772 6.06762 6.14140 6.30011 6.38905 6.63568 6.67896 6.71818 6.88778 6.97758 7.35012 7.55999 7.57656 7.74536 7.79072 8.23110 8.46957 9.15036 9.77663 10.45141 11.35035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.002442 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.920512 B =11465.428585 C =13057.829613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.074 0.926 4 C 0.140 3.860 5 N -0.600 5.600 6 C -0.236 4.236 7 H 0.075 0.925 8 C -0.002 4.002 9 N -0.913 5.913 10 Si 0.910 3.090 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.172 3.828 15 C 0.119 3.881 16 H 0.088 0.912 17 N -0.713 5.713 18 C 0.510 3.490 19 O -0.536 6.536 20 C -0.136 4.136 21 C -0.120 4.120 22 C 0.100 3.900 23 N -0.509 5.509 24 C 0.406 3.594 25 O -0.438 6.438 26 N -0.298 5.298 27 N -0.299 5.299 28 C 0.409 3.591 29 O -0.432 6.432 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.395 0.605 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.414 0.586 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 13.109 14.108 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.327 5.327 6 C -0.364 4.364 7 H 0.093 0.907 8 C -0.200 4.200 9 N -0.558 5.558 10 Si 0.740 3.260 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.046 3.954 15 C 0.013 3.987 16 H 0.106 0.894 17 N -0.364 5.364 18 C 0.295 3.705 19 O -0.413 6.413 20 C -0.177 4.177 21 C -0.158 4.158 22 C -0.023 4.023 23 N -0.229 5.229 24 C 0.096 3.904 25 O -0.238 6.238 26 N -0.142 5.142 27 N -0.143 5.143 28 C 0.099 3.901 29 O -0.231 6.231 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.228 0.772 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.273 0.727 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.334 11.226 15.518 21.306 hybrid contribution 0.583 0.827 -2.026 2.264 sum -8.751 12.053 13.492 20.097 Atomic orbital electron populations 1.21743 0.94940 1.01901 1.00895 1.22397 0.95164 0.99224 0.96100 0.90730 1.21371 0.90541 0.93055 0.93652 1.44333 1.31685 1.50408 1.06246 1.18945 0.96009 1.19326 1.02160 0.90708 1.24916 0.96369 1.00189 0.98525 1.69934 1.17195 1.42770 1.25940 0.86179 0.79510 0.81686 0.78589 1.21401 1.21519 1.20597 1.21588 0.89655 0.99628 0.84541 1.22625 1.00788 0.92499 0.82751 0.89362 1.45892 1.74196 1.09998 1.06287 1.20377 0.76630 0.89109 0.84377 1.90750 1.49308 1.15143 1.86055 1.21531 1.04557 0.98794 0.92786 1.21671 1.05012 0.97975 0.91188 1.22045 1.05252 0.93076 0.81896 1.47150 1.06968 1.44172 1.24630 1.21316 0.82646 0.96196 0.90215 1.84909 1.13672 1.52258 1.72961 1.78363 0.99971 1.17024 1.18870 1.78373 1.02514 1.20354 1.13065 1.21347 0.81667 0.96086 0.90970 1.85030 1.18837 1.50713 1.68557 0.93161 0.92766 0.92494 0.95731 0.95523 0.93630 0.91904 0.94978 0.77155 0.88413 0.88769 0.90646 0.89671 0.88295 0.88034 0.72721 0.73079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.16 37.15 0.34 -1.36 16 2 C -0.11 -1.71 3.16 -88.78 -0.28 -1.99 16 3 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 4 C 0.14 2.81 6.85 -3.05 -0.02 2.79 16 5 N -0.60 -15.28 3.39 -170.06 -0.58 -15.86 16 6 C -0.24 -6.62 10.21 -15.06 -0.15 -6.78 16 7 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 8 C 0.00 -0.07 5.38 -17.43 -0.09 -0.16 16 9 N -0.91 -27.11 10.92 55.49 0.61 -26.50 16 10 Si 0.91 22.28 29.57 -169.99 -5.03 17.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.17 4.14 5.06 -2.53 -0.01 4.12 16 15 C 0.12 2.13 2.77 -65.78 -0.18 1.95 16 16 H 0.09 1.76 7.63 -51.93 -0.40 1.37 16 17 N -0.71 -9.81 5.23 -51.73 -0.27 -10.08 16 18 C 0.51 7.16 7.83 -10.98 -0.09 7.07 16 19 O -0.54 -10.31 15.73 5.56 0.09 -10.22 16 20 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 21 C -0.12 -1.03 4.83 -26.73 -0.13 -1.15 16 22 C 0.10 0.58 6.01 -4.04 -0.02 0.56 16 23 N -0.51 -4.50 2.76 -120.05 -0.33 -4.83 16 24 C 0.41 4.09 9.15 -88.81 -0.81 3.28 16 25 O -0.44 -3.07 13.58 -18.58 -0.25 -3.32 16 26 N -0.30 -3.96 12.72 29.65 0.38 -3.58 16 27 N -0.30 -4.04 12.72 29.65 0.38 -3.66 16 28 C 0.41 4.31 9.15 -88.81 -0.81 3.49 16 29 O -0.43 -3.47 13.58 -18.58 -0.25 -3.72 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.53 7.77 -51.93 -0.40 0.12 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.78 7.33 -51.93 -0.38 1.40 16 37 H 0.03 0.83 7.94 -51.93 -0.41 0.42 16 38 H 0.40 4.02 8.52 -40.82 -0.35 3.68 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.41 1.04 9.06 45.56 0.41 1.46 16 46 H 0.41 0.86 9.06 45.56 0.41 1.28 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -39.81 389.50 -7.11 -46.93 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.30 Total: 1.14 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.43 Total: 10.58 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.18 Total: -64.51 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.42 Total: -17.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.81 -7.11 -46.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207784698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.383 kcal (2) G-P(sol) polarization free energy of solvation -39.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds