Wall clock time and date at job start Tue Mar 31 2020 22:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38812 * 119.99383 * 164.03306 * 6 5 4 9 9 N 1.31611 * 120.00597 * 350.53212 * 8 6 5 10 10 Si 1.86807 * 119.99635 * 170.25783 * 8 6 5 11 11 H 1.48502 * 109.46980 * 84.94616 * 10 8 6 12 12 H 1.48493 * 109.46954 * 204.94631 * 10 8 6 13 13 H 1.48497 * 109.47177 * 324.95034 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47084 * 179.97438 * 21 20 18 23 23 N 1.46503 * 109.46851 * 180.02562 * 22 21 20 24 24 C 1.36369 * 125.96063 * 269.69223 * 23 22 21 25 25 O 1.35629 * 125.99024 * 0.03458 * 24 23 22 26 26 N 1.30911 * 108.02184 * 179.88899 * 24 23 22 27 27 N 1.40115 * 107.93643 * 0.37012 * 26 24 23 28 28 C 1.30898 * 107.94437 * 359.76508 * 27 26 24 29 29 O 1.35627 * 125.99318 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 31 31 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 32 32 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 33 33 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 34 34 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 35 35 H 0.96998 * 120.00687 * 179.72516 * 9 8 6 36 36 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 37 37 H 1.09000 * 110.36876 * 265.41061 * 14 5 4 38 38 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 39 39 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 40 40 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 41 41 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 42 42 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 43 43 H 1.09004 * 109.47071 * 299.99989 * 22 21 20 44 44 H 1.08999 * 109.47128 * 60.00404 * 22 21 20 45 45 H 0.96700 * 114.00035 * 90.00406 * 25 24 23 46 46 H 0.96709 * 113.99432 * 270.02228 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2548 -2.8024 -1.0494 9 7 5.7902 -2.2313 0.0085 10 14 6.1743 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1228 -4.8155 -1.0070 13 1 5.2045 -5.1654 -2.4487 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6948 0.4672 7.3121 23 7 2.7763 -0.3567 8.5208 24 6 1.7231 -0.7602 9.2873 25 8 0.4172 -0.4698 9.0639 26 7 2.1931 -1.4796 10.2749 27 7 3.5871 -1.5332 10.1444 28 6 3.9190 -0.8489 9.0791 29 8 5.1787 -0.6617 8.6124 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0562 33 1 2.3813 -0.1004 -1.9963 34 1 1.3155 -1.4715 -1.5803 35 1 6.6622 -2.5155 0.3241 36 1 3.7960 -2.1405 1.2206 37 1 4.1945 -0.4477 0.7993 38 1 2.2480 1.0365 2.2788 39 1 3.3696 1.0180 4.7291 40 1 1.5985 1.0849 4.8940 41 1 1.6377 -1.0327 6.1829 42 1 3.4088 -1.1002 6.0184 43 1 3.6033 1.0619 7.2162 44 1 1.8322 1.1300 7.3812 45 1 -0.0397 -1.1154 8.5076 46 1 5.6178 0.1226 8.9693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207784698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:32 Heat of formation + Delta-G solvation = -43.713324 kcal Electronic energy + Delta-G solvation = -29379.396732 eV Core-core repulsion = 25112.884145 eV Total energy + Delta-G solvation = -4266.512586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.30447 -40.98119 -39.22321 -39.12623 -38.04214 -36.66197 -35.61959 -34.30440 -33.37056 -32.22199 -30.68228 -29.83459 -28.04917 -27.32165 -25.34122 -23.86484 -23.80660 -22.76228 -22.15283 -21.56751 -20.81146 -19.81366 -19.64144 -18.90353 -18.17056 -17.71931 -17.38959 -17.19989 -16.86183 -16.66775 -16.37297 -15.76723 -15.30607 -15.22592 -14.98210 -14.48361 -14.46387 -14.22889 -14.00010 -13.91321 -13.59220 -13.35796 -13.27958 -13.13448 -13.01917 -12.89895 -12.83889 -12.66209 -12.34566 -12.25975 -12.01947 -11.94096 -11.90461 -11.70393 -11.50856 -11.44903 -11.09565 -10.82376 -10.73621 -10.55503 -9.96781 -8.87098 -7.94020 -5.31905 0.51426 0.75139 1.14924 1.40693 1.44187 1.52300 1.73240 2.20904 2.23741 2.46428 2.91372 3.26600 3.51890 3.57930 3.65281 3.81155 3.89303 4.02197 4.05851 4.09927 4.17186 4.30482 4.40254 4.43649 4.55364 4.60881 4.64722 4.69732 4.72780 4.89997 5.04344 5.05598 5.09175 5.17510 5.23427 5.33615 5.36260 5.37569 5.49133 5.55155 5.74395 6.15626 6.24616 6.46845 6.68084 6.80563 7.01425 7.40325 7.70972 8.37240 9.17142 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.002442 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.920512 B =11465.428585 C =13057.829613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 H 0.099 0.901 4 C 0.130 3.870 5 N -0.626 5.626 6 C -0.250 4.250 7 H 0.080 0.920 8 C -0.063 4.063 9 N -0.944 5.944 10 Si 0.976 3.024 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.271 1.271 14 C 0.184 3.816 15 C 0.138 3.862 16 H 0.065 0.935 17 N -0.702 5.702 18 C 0.500 3.500 19 O -0.597 6.597 20 C -0.120 4.120 21 C -0.115 4.115 22 C 0.104 3.896 23 N -0.505 5.505 24 C 0.418 3.582 25 O -0.432 6.432 26 N -0.344 5.344 27 N -0.346 5.346 28 C 0.417 3.583 29 O -0.438 6.438 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.247 0.753 36 H 0.003 0.997 37 H 0.007 0.993 38 H 0.418 0.582 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.434 0.566 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 16.247 13.587 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.109 4.109 3 H 0.118 0.882 4 C 0.005 3.995 5 N -0.352 5.352 6 C -0.379 4.379 7 H 0.097 0.903 8 C -0.257 4.257 9 N -0.591 5.591 10 Si 0.803 3.197 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.196 1.196 14 C 0.057 3.943 15 C 0.031 3.969 16 H 0.083 0.917 17 N -0.353 5.353 18 C 0.289 3.711 19 O -0.478 6.478 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.017 4.017 23 N -0.224 5.224 24 C 0.107 3.893 25 O -0.236 6.236 26 N -0.189 5.189 27 N -0.191 5.191 28 C 0.106 3.894 29 O -0.241 6.241 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.255 0.745 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.296 0.704 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -11.162 14.442 14.967 23.604 hybrid contribution 1.116 -0.146 -1.950 2.251 sum -10.045 14.296 13.017 21.789 Atomic orbital electron populations 1.21695 0.91696 1.01934 1.03297 1.22339 0.97560 0.99028 0.92009 0.88242 1.21647 0.88768 0.93225 0.95848 1.44660 1.32643 1.50982 1.06946 1.19363 0.96404 1.19699 1.02447 0.90266 1.25775 0.97576 1.02691 0.99621 1.70138 1.17160 1.44255 1.27594 0.85150 0.78113 0.78958 0.77433 1.20241 1.22237 1.19620 1.21295 0.92722 0.96184 0.84065 1.22042 0.96311 0.93302 0.85276 0.91668 1.45721 1.73806 1.10700 1.05113 1.21601 0.74622 0.89136 0.85790 1.90737 1.51782 1.18313 1.86944 1.21564 1.07962 0.97788 0.88660 1.21572 1.02632 0.98090 0.93145 1.22268 1.08149 0.92171 0.79119 1.47216 1.06025 1.44134 1.25071 1.21342 0.83740 0.94691 0.89523 1.84889 1.12188 1.52917 1.73581 1.78228 1.00181 1.19356 1.21134 1.78237 1.03029 1.22458 1.15385 1.21379 0.82704 0.95087 0.90252 1.84998 1.17992 1.52539 1.68615 0.90596 0.90497 0.93712 0.95303 0.95091 0.94432 0.97870 0.97462 0.74464 0.85767 0.83839 0.91818 0.93824 0.85650 0.84760 0.70376 0.70141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.16 71.98 0.66 -2.05 16 2 C -0.09 -2.60 3.16 -9.60 -0.03 -2.63 16 3 H 0.10 2.42 8.00 -2.38 -0.02 2.40 16 4 C 0.13 5.12 6.85 86.73 0.59 5.71 16 5 N -0.63 -32.71 3.39 -691.96 -2.35 -35.05 16 6 C -0.25 -14.40 10.21 84.03 0.86 -13.54 16 7 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 8 C -0.06 -3.68 5.38 84.86 0.46 -3.22 16 9 N -0.94 -58.69 10.92 21.65 0.24 -58.46 16 10 Si 0.98 47.02 29.57 68.60 2.03 49.05 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.18 9.24 5.06 86.86 0.44 9.68 16 15 C 0.14 4.92 2.77 46.39 0.13 5.05 16 16 H 0.07 2.67 7.63 -2.39 -0.02 2.65 16 17 N -0.70 -18.01 5.23 -435.96 -2.28 -20.29 16 18 C 0.50 13.48 7.83 87.66 0.69 14.17 16 19 O -0.60 -23.81 15.73 -3.03 -0.05 -23.86 16 20 C -0.12 -1.46 5.70 29.85 0.17 -1.29 16 21 C -0.12 -1.76 4.83 30.60 0.15 -1.61 16 22 C 0.10 0.84 6.01 86.38 0.52 1.36 16 23 N -0.50 -8.10 2.76 -755.17 -2.08 -10.19 16 24 C 0.42 7.98 9.15 179.72 1.65 9.63 16 25 O -0.43 -5.14 13.58 -89.41 -1.21 -6.35 16 26 N -0.34 -9.32 12.72 -173.65 -2.21 -11.53 16 27 N -0.35 -9.63 12.72 -173.66 -2.21 -11.83 16 28 C 0.42 8.59 9.15 179.72 1.65 10.23 16 29 O -0.44 -6.65 13.58 -89.40 -1.21 -7.86 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.03 1.19 7.77 -2.39 -0.02 1.17 16 35 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.00 0.17 7.33 -2.39 -0.02 0.15 16 37 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 38 H 0.42 6.91 8.52 -92.71 -0.79 6.12 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 1.11 8.10 -2.39 -0.02 1.10 16 42 H 0.04 1.04 8.10 -2.38 -0.02 1.02 16 43 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.43 1.29 9.06 -74.06 -0.67 0.62 16 46 H 0.44 1.13 9.06 -74.05 -0.67 0.46 16 Total: -1.00 -96.53 389.50 -4.51 -101.04 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.09 Total: 3.84 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.92 Total: 31.49 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -10.89 Total: -147.34 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -2.48 Total: -38.07 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -96.53 -4.51 -101.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207784698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.325 kcal (2) G-P(sol) polarization free energy of solvation -96.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds