Wall clock time and date at job start Tue Mar 31 2020 22:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47259 * 2 1 4 4 C 1.52997 * 109.47135 * 120.00202 * 2 1 3 5 5 C 1.53002 * 109.47366 * 185.00138 * 4 2 1 6 6 N 1.46504 * 109.47287 * 179.97438 * 5 4 2 7 7 C 1.34767 * 119.99917 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00114 * 0.02562 * 7 6 5 9 9 C 1.47705 * 119.99948 * 180.02562 * 7 6 5 10 10 C 1.40195 * 120.46166 * 180.02562 * 9 7 6 11 11 C 1.38041 * 118.38791 * 180.02562 * 10 9 7 12 12 C 1.39509 * 119.21273 * 359.97438 * 11 10 9 13 13 C 1.48226 * 119.57207 * 179.97438 * 12 11 10 14 14 C 1.39424 * 120.13057 * 180.02562 * 13 12 11 15 15 C 1.37995 * 119.86731 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.12963 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.26308 * 359.97438 * 16 15 14 18 18 C 1.37988 * 120.13062 * 0.02562 * 17 16 15 19 19 N 1.32771 * 120.85905 * 0.26516 * 12 11 10 20 20 C 1.31522 * 121.76828 * 359.46514 * 19 12 11 21 21 N 1.46500 * 109.47074 * 239.99744 * 2 1 3 22 22 C 1.36940 * 120.00044 * 84.99886 * 21 2 1 23 23 H 1.07999 * 119.99974 * 0.02562 * 22 21 2 24 24 C 1.38810 * 119.99929 * 179.97438 * 22 21 2 25 25 N 1.31617 * 120.00078 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99817 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46950 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47007 * 120.00128 * 26 24 22 29 29 H 1.48505 * 109.47013 * 240.00216 * 26 24 22 30 30 H 1.09003 * 109.47093 * 60.00129 * 1 2 3 31 31 H 1.09006 * 109.47504 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47363 * 300.00084 * 1 2 3 33 33 H 1.08995 * 109.47437 * 64.99471 * 4 2 1 34 34 H 1.09003 * 109.46894 * 304.99921 * 4 2 1 35 35 H 1.08998 * 109.46793 * 59.99731 * 5 4 2 36 36 H 1.08999 * 109.46495 * 299.99610 * 5 4 2 37 37 H 0.97001 * 119.99756 * 0.02562 * 6 5 4 38 38 H 1.08002 * 120.80632 * 359.97438 * 10 9 7 39 39 H 1.07995 * 120.39635 * 180.02562 * 11 10 9 40 40 H 1.07996 * 120.06773 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93430 * 179.72605 * 15 14 13 42 42 H 1.08010 * 119.86629 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.93254 * 180.02562 * 17 16 15 44 44 H 1.08003 * 120.06632 * 180.02562 * 18 17 16 45 45 H 1.07999 * 119.65676 * 180.25336 * 20 19 12 46 46 H 0.96998 * 120.00101 * 264.99976 * 21 2 1 47 47 H 0.97007 * 119.99567 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3035 2.5102 7 6 5.3739 -1.3396 2.7754 8 8 6.1602 -0.7991 2.0220 9 6 5.8662 -2.0359 3.9814 10 6 7.2381 -2.0790 4.2670 11 6 7.6511 -2.7418 5.4052 12 6 6.6972 -3.3417 6.2277 13 6 7.1318 -4.0560 7.4516 14 6 6.1884 -4.6602 8.2816 15 6 6.5991 -5.3243 9.4194 16 6 7.9438 -5.3907 9.7374 17 6 8.8844 -4.7931 8.9178 18 6 8.4857 -4.1263 7.7774 19 7 5.4055 -3.2861 5.9254 20 6 4.9717 -2.6601 4.8531 21 7 2.0183 -0.6907 -1.1961 22 6 2.1490 -0.0076 -2.3758 23 1 1.8926 1.0404 -2.4242 24 6 2.6122 -0.6619 -3.5090 25 7 2.9253 -1.9389 -3.4498 26 14 2.7913 0.2701 -5.1180 27 1 2.3761 1.6822 -4.9209 28 1 4.2084 0.2273 -5.5598 29 1 1.9310 -0.3584 -6.1525 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1369 35 1 3.8531 0.4369 1.3574 36 1 3.9993 -1.0729 0.4260 37 1 3.4257 -1.7350 3.1111 38 1 7.9546 -1.6058 3.6118 39 1 8.7000 -2.7946 5.6566 40 1 5.1384 -4.6094 8.0341 41 1 5.8689 -5.7889 10.0655 42 1 8.2606 -5.9119 10.6288 43 1 9.9328 -4.8486 9.1710 44 1 9.2210 -3.6605 7.1380 45 1 3.9129 -2.6326 4.6421 46 1 2.2490 -1.6318 -1.1526 47 1 3.2486 -2.3962 -4.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266180484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:02 Heat of formation + Delta-G solvation = 29.615114 kcal Electronic energy + Delta-G solvation = -27028.355457 eV Core-core repulsion = 23175.871893 eV Total energy + Delta-G solvation = -3852.483564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96539 -39.58605 -38.66677 -36.60512 -34.52567 -33.34943 -32.88383 -32.23927 -31.26847 -30.24502 -29.03240 -28.00455 -25.22149 -24.35316 -23.79952 -22.72884 -22.40008 -21.76321 -20.72342 -19.78222 -18.36996 -17.57488 -17.13914 -16.93971 -16.48529 -15.54343 -15.42400 -14.98961 -14.92802 -14.86632 -14.69864 -14.39220 -13.91285 -13.84300 -13.69876 -13.49844 -13.32935 -13.12023 -12.83957 -12.66690 -12.49622 -12.04509 -11.70177 -11.54990 -11.49206 -11.11647 -10.93332 -10.76588 -10.64948 -10.35605 -10.29297 -10.18517 -10.10811 -9.93076 -9.65763 -9.61800 -9.35568 -8.97026 -8.87723 -8.61360 -6.94312 -5.74267 -3.02956 -0.06735 0.89667 1.00578 1.20418 2.77611 3.15425 3.37473 3.45705 3.51340 3.53490 3.63367 3.75714 4.16574 4.46882 4.49624 4.54054 4.61709 4.62081 4.66780 4.76641 4.92140 5.05755 5.17647 5.18716 5.28030 5.38392 5.45482 5.56277 5.59170 5.65605 5.72120 5.77615 5.86826 5.98608 6.05742 6.08422 6.13575 6.16772 6.23673 6.32630 6.38582 6.43914 6.53607 6.62567 6.69088 6.86241 7.06204 7.47551 7.53082 7.73557 8.22344 8.44041 9.55580 10.12090 10.46560 11.48381 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.001747 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.416741 B =16019.361908 C =16686.237788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.721 5.721 7 C 0.556 3.444 8 O -0.529 6.529 9 C -0.182 4.182 10 C -0.013 4.013 11 C -0.170 4.170 12 C 0.185 3.815 13 C -0.055 4.055 14 C -0.076 4.076 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.125 4.125 18 C -0.098 4.098 19 N -0.481 5.481 20 C 0.141 3.859 21 N -0.724 5.724 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.162 0.838 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -5.692 28.930 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.342 3.658 8 O -0.406 6.406 9 C -0.188 4.188 10 C -0.039 4.039 11 C -0.190 4.190 12 C 0.049 3.951 13 C -0.055 4.055 14 C -0.095 4.095 15 C -0.145 4.145 16 C -0.126 4.126 17 C -0.143 4.143 18 C -0.117 4.117 19 N -0.189 5.189 20 C -0.018 4.018 21 N -0.366 5.366 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.180 0.820 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.257 -5.548 28.747 30.420 hybrid contribution 0.376 0.288 -1.290 1.374 sum 8.633 -5.259 27.457 29.259 Atomic orbital electron populations 1.22423 0.99090 1.00852 0.99982 1.20150 0.91914 0.95590 0.85980 0.93242 1.22074 0.93729 1.01924 0.99470 1.21525 0.94560 0.97242 0.86754 1.46040 1.06742 1.56741 1.27665 1.17952 0.82790 0.80320 0.84753 1.90826 1.55267 1.45579 1.48962 1.21158 0.95532 1.03860 0.98218 1.21708 0.94930 0.92582 0.94725 1.22063 1.01223 1.00078 0.95597 1.19941 0.88861 0.93146 0.93106 1.18525 0.93492 0.99775 0.93754 1.21389 1.00294 0.94668 0.93126 1.21196 0.96122 0.99840 0.97358 1.21326 0.93300 0.98603 0.99374 1.21077 0.99858 0.98474 0.94894 1.21281 0.94627 0.98574 0.97175 1.67598 1.16049 1.17161 1.18096 1.22926 0.99894 0.90548 0.88476 1.42460 1.78086 1.10654 1.05357 1.19270 1.36388 0.93878 0.87328 0.91131 1.24730 1.02177 0.95969 0.98068 1.69667 1.50978 1.08666 1.28744 0.86147 0.77302 0.78805 0.84120 1.20577 1.21903 1.21978 0.92715 0.93507 0.94557 0.91499 0.91826 0.91528 0.89426 0.77023 0.83094 0.83833 0.84547 0.85594 0.85840 0.85562 0.85390 0.82049 0.78292 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.94 16 6 N -0.72 -9.49 5.51 -61.29 -0.34 -9.83 16 7 C 0.56 8.28 7.77 -12.40 -0.10 8.18 16 8 O -0.53 -10.12 16.41 5.30 0.09 -10.04 16 9 C -0.18 -2.18 5.89 -104.78 -0.62 -2.80 16 10 C -0.01 -0.15 9.70 -38.92 -0.38 -0.52 16 11 C -0.17 -1.56 9.44 -39.18 -0.37 -1.93 16 12 C 0.18 1.89 6.73 -82.88 -0.56 1.33 16 13 C -0.05 -0.49 5.88 -104.91 -0.62 -1.11 16 14 C -0.08 -0.65 9.57 -39.23 -0.38 -1.02 16 15 C -0.13 -0.86 10.03 -39.63 -0.40 -1.26 16 16 C -0.11 -0.65 10.04 -39.51 -0.40 -1.05 16 17 C -0.13 -0.77 10.03 -39.64 -0.40 -1.16 16 18 C -0.10 -0.70 9.42 -39.23 -0.37 -1.07 16 19 N -0.48 -5.24 9.40 -9.45 -0.09 -5.33 16 20 C 0.14 1.45 10.70 -17.16 -0.18 1.27 16 21 N -0.72 -17.54 4.57 -53.43 -0.24 -17.79 16 22 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 26 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 37 H 0.40 3.81 6.52 -40.82 -0.27 3.54 16 38 H 0.15 1.58 7.73 -52.49 -0.41 1.18 16 39 H 0.14 0.89 6.17 -52.49 -0.32 0.57 16 40 H 0.14 1.15 7.53 -52.49 -0.40 0.76 16 41 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.67 6.17 -52.48 -0.32 0.34 16 45 H 0.16 1.21 6.41 -52.49 -0.34 0.87 16 46 H 0.38 9.93 7.80 -40.82 -0.32 9.62 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -34.23 396.60 -10.45 -44.68 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.54 Total: 10.06 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -5.00 Total: -7.82 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.05 Total: -60.48 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.23 -10.45 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266180484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.296 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds