Wall clock time and date at job start Tue Mar 31 2020 22:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.46960 * 2 1 4 4 C 1.53001 * 109.47041 * 239.99904 * 2 1 3 5 5 C 1.53000 * 109.47309 * 175.00297 * 4 2 1 6 6 N 1.46494 * 109.47335 * 180.02562 * 5 4 2 7 7 C 1.34779 * 120.00034 * 180.27159 * 6 5 4 8 8 O 1.21737 * 119.99691 * 354.85848 * 7 6 5 9 9 C 1.46385 * 119.99901 * 174.85037 * 7 6 5 10 10 C 1.36718 * 126.82284 * 5.01284 * 9 7 6 11 11 N 1.33229 * 107.95779 * 179.89133 * 10 9 7 12 12 C 1.31540 * 109.75798 * 0.37170 * 11 10 9 13 13 O 1.35207 * 125.48803 * 179.78251 * 12 11 10 14 14 N 1.34938 * 109.01768 * 359.76854 * 12 11 10 15 15 C 1.46498 * 126.54319 * 179.97438 * 14 12 11 16 16 N 1.46901 * 109.47116 * 120.00110 * 2 1 3 17 17 C 1.46896 * 110.99910 * 274.99904 * 16 2 1 18 18 C 1.50702 * 109.47198 * 180.02562 * 17 16 2 19 19 O 1.21291 * 119.99865 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00167 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00052 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99928 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00229 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00328 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99662 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47028 * 90.00236 * 25 23 21 27 27 H 1.48504 * 109.46884 * 209.99991 * 25 23 21 28 28 H 1.48500 * 109.47169 * 330.00107 * 25 23 21 29 29 H 1.09000 * 109.47335 * 299.99901 * 1 2 3 30 30 H 1.08995 * 109.47242 * 60.00004 * 1 2 3 31 31 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47322 * 54.99775 * 4 2 1 33 33 H 1.09004 * 109.47317 * 294.99950 * 4 2 1 34 34 H 1.08999 * 109.47355 * 59.99498 * 5 4 2 35 35 H 1.09004 * 109.46648 * 300.00063 * 5 4 2 36 36 H 0.97001 * 119.99940 * 359.97438 * 6 5 4 37 37 H 1.07994 * 126.02425 * 0.02562 * 10 9 7 38 38 H 0.96702 * 114.00310 * 269.98113 * 13 12 11 39 39 H 1.08997 * 109.47342 * 274.88975 * 15 14 12 40 40 H 1.09001 * 109.47304 * 34.88809 * 15 14 12 41 41 H 1.08999 * 109.47174 * 154.88358 * 15 14 12 42 42 H 1.00903 * 110.99973 * 38.95514 * 16 2 1 43 43 H 1.08999 * 109.47422 * 300.00219 * 17 16 2 44 44 H 1.09001 * 109.46912 * 60.00463 * 17 16 2 45 45 H 0.97000 * 119.99909 * 359.97438 * 20 18 17 46 46 H 0.97005 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3744 -1.3439 -2.7727 8 8 6.1540 -0.7290 -2.0684 9 6 5.8720 -2.1275 -3.9047 10 6 5.1214 -2.7888 -4.8365 11 7 5.9550 -3.3740 -5.6954 12 6 7.1989 -3.1227 -5.3491 13 8 8.2992 -3.5655 -5.9982 14 7 7.1998 -2.3514 -4.2418 15 6 8.3773 -1.8473 -3.5309 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5885 -0.5216 3.5557 19 8 2.8688 -1.6985 3.4699 20 7 2.7287 0.1205 4.7324 21 6 3.1895 -0.5563 5.8319 22 1 3.4399 -1.6041 5.7553 23 6 3.3346 0.1057 7.0449 24 7 3.7758 -0.5431 8.0990 25 14 2.9022 1.9182 7.1772 26 1 1.4728 2.0599 7.5543 27 1 3.7532 2.5557 8.2139 28 1 3.1369 2.5799 5.8686 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2618 -2.1370 33 1 1.7516 -1.7716 -1.2056 34 1 3.9994 -1.0729 -0.4260 35 1 3.8532 0.4369 -1.3574 36 1 3.4257 -1.7350 -3.1111 37 1 4.0428 -2.8280 -4.8717 38 1 8.6254 -4.4192 -5.6822 39 1 8.7279 -2.6024 -2.8273 40 1 9.1672 -1.6246 -4.2483 41 1 8.1131 -0.9397 -2.9881 42 1 1.4495 -1.4980 1.4100 43 1 2.7588 1.0462 2.1182 44 1 1.0870 0.6162 2.5525 45 1 2.5042 1.0617 4.8011 46 1 3.8774 -0.0808 8.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267139866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:08 Heat of formation + Delta-G solvation = -77.629672 kcal Electronic energy + Delta-G solvation = -28467.423276 eV Core-core repulsion = 24199.439966 eV Total energy + Delta-G solvation = -4267.983310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.34008 -40.52786 -40.28741 -38.42002 -38.23241 -36.19196 -35.87551 -35.03881 -33.76196 -32.78207 -31.00444 -29.16717 -28.12014 -28.05640 -25.65241 -24.85887 -23.44805 -22.54539 -21.90829 -21.32613 -21.05400 -20.25402 -19.68146 -18.56755 -17.73497 -17.61724 -17.17522 -16.96868 -16.73785 -16.51131 -16.31915 -15.91342 -15.52448 -15.44033 -15.28307 -14.97672 -14.67453 -14.49161 -14.42237 -14.23358 -13.88252 -13.74819 -13.73677 -13.53149 -13.21017 -13.12164 -12.83940 -12.63048 -12.41963 -12.21297 -12.12699 -11.97589 -11.68199 -11.50748 -11.44712 -11.04127 -10.92514 -10.42156 -10.24672 -10.18421 -9.56688 -9.21255 -8.41439 -6.02160 0.08040 1.08666 1.29956 1.35072 1.44203 1.53149 1.97247 2.16514 2.22798 2.27741 2.76922 2.79046 3.15299 3.48072 3.57016 3.77232 3.90329 3.92603 4.14800 4.17140 4.22668 4.29850 4.35062 4.45423 4.52441 4.58529 4.60163 4.62749 4.80535 4.93365 4.96522 5.08203 5.24848 5.27701 5.29637 5.37902 5.46387 5.51172 5.53508 5.92622 6.13988 6.42409 6.48999 6.54723 6.60357 6.67531 6.88586 7.13381 7.40506 7.97645 8.76306 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.001981 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.407421 B =14132.706962 C =15385.293238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.088 0.912 4 C -0.106 4.106 5 C 0.131 3.869 6 N -0.698 5.698 7 C 0.590 3.410 8 O -0.584 6.584 9 C -0.101 4.101 10 C 0.067 3.933 11 N -0.516 5.516 12 C 0.399 3.601 13 O -0.443 6.443 14 N -0.434 5.434 15 C 0.060 3.940 16 N -0.682 5.682 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.614 6.614 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.232 1.232 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.221 0.779 38 H 0.428 0.572 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.345 0.655 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.389 0.611 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 3.073 -29.426 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 H 0.106 0.894 4 C -0.144 4.144 5 C 0.007 3.993 6 N -0.349 5.349 7 C 0.377 3.623 8 O -0.466 6.466 9 C -0.217 4.217 10 C -0.088 4.088 11 N -0.245 5.245 12 C 0.099 3.901 13 O -0.247 6.247 14 N -0.127 5.127 15 C -0.081 4.081 16 N -0.315 5.315 17 C -0.069 4.069 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.155 1.155 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.237 0.763 38 H 0.290 0.710 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.164 0.836 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.519 2.835 -29.875 30.013 hybrid contribution -0.361 0.412 1.878 1.956 sum -0.880 3.248 -27.996 28.198 Atomic orbital electron populations 1.22439 0.95377 1.02656 1.03094 1.21638 0.93767 0.98232 0.88916 0.89366 1.21728 0.92084 1.02488 0.98074 1.21293 0.95681 0.96484 0.85797 1.45494 1.05689 1.56412 1.27331 1.16861 0.83334 0.79798 0.82322 1.90814 1.56929 1.46934 1.51928 1.20613 0.84287 1.12811 1.03963 1.23122 1.00974 0.95006 0.89662 1.70349 0.98675 1.26358 1.29097 1.20393 0.87966 0.96087 0.85628 1.84761 1.38668 1.43891 1.57392 1.45826 1.07467 1.38268 1.21109 1.22431 0.85214 1.02189 0.98242 1.60212 1.58861 1.09231 1.03156 1.21635 1.01608 0.95425 0.88263 1.21102 0.82385 0.87990 0.84967 1.90542 1.55308 1.18781 1.85255 1.42053 1.60695 1.11826 1.08889 1.18999 1.42392 0.96026 0.88298 0.92793 1.26142 0.96473 1.05079 0.93897 1.69809 1.46383 1.39615 1.01795 0.85355 0.79470 0.76446 0.80180 1.17928 1.20126 1.15532 0.92943 0.89831 0.92293 0.87773 0.90532 0.93139 0.92267 0.74369 0.76281 0.71013 0.89004 0.87166 0.89024 0.83585 0.87347 0.90415 0.77509 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.16 71.98 0.66 -1.61 16 2 C 0.08 1.39 2.59 44.92 0.12 1.50 16 3 H 0.09 1.35 7.80 -2.39 -0.02 1.33 16 4 C -0.11 -1.39 5.00 30.59 0.15 -1.24 16 5 C 0.13 2.61 5.57 86.38 0.48 3.09 16 6 N -0.70 -11.82 5.54 -467.35 -2.59 -14.41 16 7 C 0.59 13.87 7.77 86.36 0.67 14.54 16 8 O -0.58 -18.60 14.79 -4.47 -0.07 -18.67 16 9 C -0.10 -2.06 6.92 39.80 0.28 -1.78 16 10 C 0.07 1.10 11.35 84.12 0.96 2.06 16 11 N -0.52 -10.52 11.22 -313.65 -3.52 -14.04 16 12 C 0.40 7.45 9.01 179.99 1.62 9.07 16 13 O -0.44 -5.72 13.53 -84.87 -1.15 -6.87 16 14 N -0.43 -8.49 3.20 -652.01 -2.09 -10.58 16 15 C 0.06 0.97 10.81 127.77 1.38 2.35 16 16 N -0.68 -18.08 5.33 -495.59 -2.64 -20.72 16 17 C 0.06 1.85 5.96 85.56 0.51 2.36 16 18 C 0.45 20.14 7.82 87.66 0.69 20.83 16 19 O -0.61 -34.15 15.78 -3.06 -0.05 -34.19 16 20 N -0.59 -28.11 5.09 -306.99 -1.56 -29.67 16 21 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 22 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 24 N -0.94 -56.95 13.96 21.66 0.30 -56.65 16 25 Si 0.97 39.04 27.74 68.60 1.90 40.95 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 27 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 28 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 29 H 0.05 0.75 7.45 -2.39 -0.02 0.73 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.79 8.13 -2.38 -0.02 0.77 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.46 7.75 -2.39 -0.02 1.44 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 3.77 7.40 -92.71 -0.69 3.08 16 37 H 0.22 1.62 7.45 -2.91 -0.02 1.60 16 38 H 0.43 1.01 9.06 -74.06 -0.67 0.34 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.91 6.17 -2.39 -0.01 1.90 16 42 H 0.34 9.90 8.17 -89.69 -0.73 9.16 16 43 H 0.11 2.77 8.06 -2.39 -0.02 2.75 16 44 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 45 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 46 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -90.97 389.72 -4.25 -95.21 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -1.62 Total: 37.54 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 8.83 Total: 32.09 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -12.10 Total: -146.05 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.26 Total: -59.73 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.95 kcal Total: -90.97 -4.25 -95.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267139866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.584 kcal (2) G-P(sol) polarization free energy of solvation -90.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds