Wall clock time and date at job start Tue Mar 31 2020 22:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46903 * 2 1 4 4 C 1.53006 * 109.47208 * 120.00027 * 2 1 3 5 5 C 1.53003 * 109.46886 * 184.99734 * 4 2 1 6 6 N 1.46499 * 109.46738 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00015 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99852 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00064 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00231 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99928 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46898 * 90.00240 * 11 9 7 13 13 H 1.48494 * 109.47332 * 209.99962 * 11 9 7 14 14 H 1.48506 * 109.47145 * 330.00493 * 11 9 7 15 15 N 1.46498 * 109.46911 * 239.99832 * 2 1 3 16 16 C 1.34782 * 119.99543 * 85.00099 * 15 2 1 17 17 O 1.21552 * 120.00278 * 359.97438 * 16 15 2 18 18 C 1.47861 * 119.99730 * 179.97438 * 16 15 2 19 19 C 1.39623 * 120.50035 * 359.97438 * 18 16 15 20 20 N 1.31696 * 120.82906 * 179.74106 * 19 18 16 21 21 C 1.31816 * 122.01307 * 0.26185 * 20 19 18 22 22 C 1.39395 * 120.91613 * 359.97438 * 21 20 19 23 23 C 1.48412 * 120.46761 * 179.97438 * 22 21 20 24 24 C 1.39334 * 120.11674 * 179.72920 * 23 22 21 25 25 C 1.38021 * 119.87612 * 179.74379 * 24 23 22 26 26 C 1.38325 * 120.11721 * 0.53625 * 25 24 23 27 27 C 1.38317 * 120.24217 * 359.71479 * 26 25 24 28 28 C 1.38014 * 120.12430 * 0.03052 * 27 26 25 29 29 C 1.39517 * 119.06581 * 0.02562 * 22 21 20 30 30 H 1.08998 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46791 * 299.99669 * 1 2 3 32 32 H 1.09001 * 109.47093 * 59.99709 * 1 2 3 33 33 H 1.08997 * 109.46983 * 305.00264 * 4 2 1 34 34 H 1.08997 * 109.46865 * 64.99833 * 4 2 1 35 35 H 1.08997 * 109.47219 * 300.00029 * 5 4 2 36 36 H 1.09000 * 109.46565 * 60.00483 * 5 4 2 37 37 H 0.97001 * 120.00376 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00335 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00230 * 264.99920 * 15 2 1 40 40 H 1.08002 * 119.58938 * 0.02772 * 19 18 16 41 41 H 1.08006 * 119.53797 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.06059 * 0.02562 * 24 23 22 43 43 H 1.07994 * 119.93974 * 180.27041 * 25 24 23 44 44 H 1.08004 * 119.87346 * 179.74434 * 26 25 24 45 45 H 1.08002 * 119.93408 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.06629 * 179.97438 * 28 27 26 47 47 H 1.07988 * 120.91378 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3952 -1.3393 2.7801 8 1 6.0936 -0.8592 2.1108 9 6 5.8579 -1.9936 3.9135 10 7 5.0068 -2.5800 4.7285 11 14 7.6886 -2.0431 4.2814 12 1 8.0586 -0.8687 5.1115 13 1 8.0120 -3.2914 5.0179 14 1 8.4507 -2.0085 3.0073 15 7 2.0183 -0.6906 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8575 1.1611 -2.4118 18 6 2.6403 -0.7151 -3.5643 19 6 2.9764 -2.0693 -3.5132 20 7 3.4116 -2.6976 -4.5856 21 6 3.5545 -2.0856 -5.7443 22 6 3.2466 -0.7332 -5.8826 23 6 3.4118 -0.0539 -7.1918 24 6 3.0964 1.2970 -7.3232 25 6 3.2570 1.9250 -8.5417 26 6 3.7194 1.2132 -9.6339 27 6 4.0290 -0.1292 -9.5102 28 6 3.8772 -0.7660 -8.2952 29 6 2.7820 -0.0268 -4.7728 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 3.4259 -1.7350 3.1111 38 1 5.3301 -3.0375 5.5202 39 1 2.2490 -1.6318 -1.1526 40 1 2.8738 -2.6095 -2.5836 41 1 3.9144 -2.6400 -6.5985 42 1 2.7314 1.8526 -6.4721 43 1 3.0170 2.9730 -8.6436 44 1 3.8396 1.7076 -10.5866 45 1 4.3900 -0.6801 -10.3661 46 1 4.1188 -1.8142 -8.1998 47 1 2.5350 1.0219 -4.8462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268371177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:27 Heat of formation + Delta-G solvation = 7.553818 kcal Electronic energy + Delta-G solvation = -27463.146487 eV Core-core repulsion = 23609.706274 eV Total energy + Delta-G solvation = -3853.440213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.89248 -40.60405 -39.57243 -37.90077 -36.15513 -34.57914 -33.97126 -33.29096 -32.07750 -31.64786 -30.08906 -29.41163 -26.24056 -25.73838 -25.23475 -23.67922 -23.07078 -22.60666 -21.96140 -21.44757 -19.45914 -19.03795 -18.24314 -17.68087 -17.51065 -16.93302 -16.69841 -16.25984 -16.19418 -15.51321 -15.46672 -15.39065 -15.26227 -14.97378 -14.87231 -14.69084 -14.48445 -14.29646 -13.95479 -13.76905 -13.59919 -13.37088 -13.11228 -12.90278 -12.89805 -12.39828 -12.30449 -12.27519 -12.00966 -11.95332 -11.91515 -11.65649 -11.36948 -11.35938 -10.95818 -10.73468 -10.56652 -10.15890 -9.89078 -9.21368 -9.01559 -7.97019 -5.25782 -0.66962 -0.27461 0.46841 0.75453 1.46372 1.47685 1.56215 1.74335 2.01014 2.54300 2.63223 3.02126 3.13055 3.36444 3.40620 3.59046 3.65574 3.67355 3.69622 3.89034 4.04287 4.05959 4.14654 4.18815 4.29972 4.35761 4.40477 4.55844 4.56720 4.57179 4.63529 4.76759 4.82575 4.85262 4.89928 4.97198 5.02287 5.12440 5.18949 5.26719 5.32830 5.35747 5.47372 5.49660 5.54546 5.57975 5.59339 6.03699 6.25633 6.40472 6.70707 7.05980 7.32335 8.07520 8.31655 9.26051 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.002123 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.711927 B =13185.264837 C =14333.906576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.119 4.119 5 C 0.152 3.848 6 N -0.744 5.744 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.272 1.272 15 N -0.705 5.705 16 C 0.565 3.435 17 O -0.572 6.572 18 C -0.190 4.190 19 C 0.133 3.867 20 N -0.495 5.495 21 C 0.130 3.870 22 C -0.100 4.100 23 C -0.063 4.063 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.113 4.113 29 C -0.021 4.021 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.022 0.978 36 H 0.007 0.993 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.177 0.823 41 H 0.192 0.808 42 H 0.124 0.876 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 3.930 -30.432 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.091 0.909 4 C -0.157 4.157 5 C 0.026 3.974 6 N -0.387 5.387 7 C -0.380 4.380 8 H 0.088 0.912 9 C -0.266 4.266 10 N -0.616 5.616 11 Si 0.800 3.200 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.197 1.197 15 N -0.356 5.356 16 C 0.352 3.648 17 O -0.452 6.452 18 C -0.195 4.195 19 C -0.025 4.025 20 N -0.203 5.203 21 C -0.027 4.027 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.131 4.131 29 C -0.047 4.047 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.194 0.806 41 H 0.208 0.792 42 H 0.142 0.858 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.164 0.836 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.939 3.901 -30.399 31.660 hybrid contribution 0.661 0.433 0.987 1.264 sum -7.279 4.334 -29.412 30.608 Atomic orbital electron populations 1.22091 0.93296 1.03142 1.02622 1.20907 0.95055 0.96527 0.82795 0.90890 1.21916 0.94514 1.01938 0.97377 1.20777 0.93565 0.94233 0.88836 1.42540 1.04455 1.65306 1.26446 1.19575 0.85326 1.27706 1.05357 0.91202 1.25547 1.01962 1.01222 0.97866 1.69793 1.34525 1.41740 1.15546 0.85172 0.80221 0.76719 0.77842 1.21450 1.21841 1.19671 1.46000 1.65992 1.14630 1.09008 1.18193 0.77121 0.86031 0.83424 1.90744 1.52179 1.16765 1.85528 1.20886 1.07170 0.96409 0.95009 1.23313 0.91012 0.90245 0.97903 1.67765 1.13519 1.39295 0.99684 1.23591 0.92301 0.91042 0.95769 1.19864 1.01444 0.95203 0.93730 1.18658 1.01953 0.94026 0.91701 1.21446 0.99953 0.94027 0.98820 1.21388 0.99361 1.01091 0.92507 1.21636 0.97681 0.94794 0.99506 1.21464 0.99355 0.95193 0.97878 1.21498 0.98560 1.00930 0.92075 1.21893 0.91626 1.00842 0.90348 0.90995 0.90264 0.93059 0.89780 0.90035 0.95969 0.97497 0.79151 0.93896 0.75188 0.80599 0.79182 0.85834 0.84165 0.83599 0.83179 0.83612 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.48 71.98 0.68 -2.55 16 2 C 0.15 3.87 2.57 44.99 0.12 3.98 16 3 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 4 C -0.12 -3.45 4.87 30.60 0.15 -3.30 16 5 C 0.15 5.97 6.15 86.38 0.53 6.50 16 6 N -0.74 -37.56 5.60 -343.46 -1.92 -39.48 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 11 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 N -0.70 -16.93 4.48 -445.38 -2.00 -18.93 16 16 C 0.57 15.35 7.75 86.79 0.67 16.02 16 17 O -0.57 -19.08 16.08 -3.88 -0.06 -19.15 16 18 C -0.19 -4.47 5.89 -20.02 -0.12 -4.59 16 19 C 0.13 2.84 10.71 85.05 0.91 3.75 16 20 N -0.50 -10.69 10.33 -193.91 -2.00 -12.70 16 21 C 0.13 2.31 10.59 84.97 0.90 3.21 16 22 C -0.10 -1.90 5.89 -19.98 -0.12 -2.02 16 23 C -0.06 -1.04 5.88 -20.04 -0.12 -1.16 16 24 C -0.12 -2.03 9.44 22.48 0.21 -1.81 16 25 C -0.13 -1.61 10.03 22.24 0.22 -1.39 16 26 C -0.12 -1.23 10.04 22.31 0.22 -1.01 16 27 C -0.12 -1.22 10.03 22.24 0.22 -1.00 16 28 C -0.11 -1.39 9.44 22.48 0.21 -1.18 16 29 C -0.02 -0.47 9.07 22.96 0.21 -0.26 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.38 19.83 7.67 -92.71 -0.71 19.12 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.41 8.27 6.66 -92.71 -0.62 7.65 16 40 H 0.18 3.03 6.41 -2.91 -0.02 3.01 16 41 H 0.19 2.08 6.21 -2.91 -0.02 2.06 16 42 H 0.12 1.97 6.27 -2.91 -0.02 1.96 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 45 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 46 H 0.15 1.11 6.23 -2.91 -0.02 1.09 16 47 H 0.15 3.23 5.99 -2.92 -0.02 3.21 16 Total: -1.00 -73.35 393.67 2.23 -71.13 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.32 Total: 32.85 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.22 Total: -3.73 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.64 Total: -129.54 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -73.35 2.23 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268371177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.680 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds