Wall clock time and date at job start Tue Mar 31 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35847 * 117.00240 * 2 1 4 4 N 1.30814 * 126.05897 * 359.96842 * 3 2 1 5 5 N 1.39917 * 108.87880 * 180.02562 * 4 3 2 6 6 C 1.46506 * 125.68349 * 180.02562 * 5 4 3 7 7 C 1.34158 * 108.62514 * 0.26891 * 5 4 3 8 8 C 1.38125 * 107.51048 * 359.57926 * 7 5 4 9 9 C 1.47248 * 126.45237 * 180.15962 * 8 7 5 10 10 O 1.21622 * 120.00342 * 180.30385 * 9 8 7 11 11 N 1.34779 * 119.99698 * 0.30587 * 9 8 7 12 12 C 1.46502 * 119.99951 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47068 * 34.99821 * 12 11 9 14 14 C 1.53002 * 109.47282 * 274.99835 * 12 11 9 15 15 C 1.53001 * 109.47177 * 154.99717 * 12 11 9 16 16 N 1.46906 * 109.46925 * 305.00462 * 15 12 11 17 17 C 1.46900 * 110.99800 * 180.02562 * 16 15 12 18 18 C 1.50691 * 109.47078 * 179.97438 * 17 16 15 19 19 O 1.21287 * 120.00598 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00150 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00267 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00217 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00073 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00097 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46937 * 89.99350 * 25 23 21 27 27 H 1.48494 * 109.47406 * 209.99626 * 25 23 21 28 28 H 1.48506 * 109.46868 * 329.99799 * 25 23 21 29 29 H 1.08997 * 109.47025 * 59.99907 * 1 2 3 30 30 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46876 * 300.00157 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.03113 * 6 5 4 33 33 H 1.09004 * 109.47073 * 210.02602 * 6 5 4 34 34 H 1.09000 * 109.47212 * 330.02685 * 6 5 4 35 35 H 1.08004 * 126.24130 * 179.70373 * 7 5 4 36 36 H 0.96994 * 119.99892 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46630 * 299.99854 * 14 12 11 38 38 H 1.09000 * 109.46652 * 60.00266 * 14 12 11 39 39 H 1.08997 * 109.47166 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.46904 * 64.99598 * 15 12 11 41 41 H 1.09001 * 109.47463 * 185.00162 * 15 12 11 42 42 H 1.00900 * 111.00013 * 303.94447 * 16 15 12 43 43 H 1.09004 * 109.46636 * 299.99618 * 17 16 15 44 44 H 1.09000 * 109.47822 * 59.98899 * 17 16 15 45 45 H 0.97008 * 119.99524 * 0.02562 * 20 18 17 46 46 H 0.96996 * 119.99583 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 -0.0006 5 7 2.4283 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0011 7 6 3.6386 2.8012 -0.0065 8 6 3.4453 1.4335 -0.0001 9 6 4.4956 0.4015 0.0004 10 8 4.1911 -0.7760 0.0009 11 7 5.7943 0.7618 0.0003 12 6 6.8393 -0.2650 0.0013 13 1 6.5086 -1.1206 -0.5875 14 6 7.1148 -0.7109 1.4388 15 6 8.1194 0.3096 -0.6086 16 7 7.8272 0.8467 -1.9443 17 6 9.0361 1.4076 -2.5623 18 6 8.6980 1.9470 -3.9281 19 8 7.5620 1.8713 -4.3460 20 7 9.6582 2.5138 -4.6855 21 6 9.3505 3.0050 -5.9279 22 1 8.3389 2.9375 -6.3000 23 6 10.3405 3.5887 -6.7089 24 7 11.5716 3.6704 -6.2564 25 14 9.9215 4.2574 -8.4020 26 1 9.5200 5.6824 -8.2860 27 1 11.1101 4.1484 -9.2854 28 1 8.8011 3.4730 -8.9806 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.1074 5.1801 1.0265 33 1 2.9824 5.3363 -0.5156 34 1 1.2301 5.0231 -0.5143 35 1 4.5904 3.3116 -0.0127 36 1 6.0370 1.7009 -0.0004 37 1 7.4455 0.1447 2.0275 38 1 6.2028 -1.1203 1.8732 39 1 7.8919 -1.4751 1.4395 40 1 8.4990 1.1081 0.0289 41 1 8.8687 -0.4779 -0.6896 42 1 7.4136 0.1411 -2.5353 43 1 9.4225 2.2136 -1.9383 44 1 9.7914 0.6275 -2.6568 45 1 10.5669 2.5740 -4.3514 46 1 12.2625 4.0782 -6.8014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268657401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:56 Heat of formation + Delta-G solvation = -23.792219 kcal Electronic energy + Delta-G solvation = -29049.172317 eV Core-core repulsion = 24783.523574 eV Total energy + Delta-G solvation = -4265.648743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61438 -39.27074 -38.37969 -38.25915 -36.44855 -34.21436 -33.60408 -33.08642 -31.55374 -31.19858 -29.80357 -28.07101 -27.55822 -26.39990 -25.01264 -23.45183 -22.88593 -21.43693 -20.83826 -20.13323 -19.24324 -18.17261 -17.86473 -17.05331 -16.48417 -16.41738 -16.03625 -15.63293 -15.20185 -15.15869 -14.96254 -14.75721 -14.56137 -14.21456 -13.97078 -13.86994 -13.49211 -13.21982 -13.06530 -12.99924 -12.86556 -12.53556 -12.34281 -12.08259 -11.93628 -11.74068 -11.52646 -11.47431 -11.36662 -11.05258 -11.00066 -10.84397 -10.40706 -10.23082 -9.69731 -9.52111 -9.30070 -8.90943 -8.56936 -8.47092 -8.08532 -7.97100 -6.43182 -3.83858 1.34873 1.99558 2.18053 3.05849 3.16443 3.25274 3.31378 3.42184 3.61892 3.90029 4.07562 4.19123 4.31375 4.48996 4.81472 4.84387 4.89525 5.04323 5.08527 5.09832 5.10485 5.16123 5.23444 5.25631 5.33560 5.37194 5.45317 5.51174 5.62849 5.64250 5.68920 5.79061 5.95319 6.03788 6.15153 6.25637 6.54817 6.68893 7.06837 7.17893 7.43787 7.53913 7.62601 7.79156 8.05157 8.53457 8.60203 9.16879 9.53245 10.04925 10.74585 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.002465 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.285481 B =11356.630403 C =12832.139590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.267 6.267 3 C 0.315 3.685 4 N -0.356 5.356 5 N -0.349 5.349 6 C 0.099 3.901 7 C 0.129 3.871 8 C -0.289 4.289 9 C 0.597 3.403 10 O -0.541 6.541 11 N -0.708 5.708 12 C 0.148 3.852 13 H 0.086 0.914 14 C -0.161 4.161 15 C 0.048 3.952 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.191 0.809 36 H 0.400 0.600 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.352 0.648 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -0.341 18.291 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.169 6.169 3 C 0.110 3.890 4 N -0.196 5.196 5 N -0.130 5.130 6 C -0.041 4.041 7 C -0.023 4.023 8 C -0.304 4.304 9 C 0.384 3.616 10 O -0.418 6.418 11 N -0.359 5.359 12 C 0.043 3.957 13 H 0.105 0.895 14 C -0.220 4.220 15 C -0.082 4.082 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.208 0.792 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.546 -0.175 18.134 23.248 hybrid contribution 1.679 -0.032 -0.963 1.936 sum -12.868 -0.206 17.171 21.458 Atomic orbital electron populations 1.23017 0.77928 1.03688 1.01898 1.86508 1.21602 1.20496 1.88300 1.20403 0.90140 0.85192 0.93296 1.77289 1.13275 0.94611 1.34387 1.47662 1.03188 1.06517 1.55613 1.22031 1.04807 0.73484 1.03821 1.23118 0.91281 0.92198 0.95746 1.19689 0.91765 0.92608 1.26377 1.17010 0.81526 0.87378 0.75652 1.90782 1.82318 1.18083 1.50650 1.45592 1.04628 1.10033 1.75689 1.20889 0.86884 0.91587 0.96346 0.89545 1.22141 1.02249 1.01368 0.96194 1.22318 0.95419 0.98699 0.91763 1.60083 1.26920 1.39851 1.03073 1.21677 0.91543 0.99353 0.95666 1.19825 0.86301 0.84553 0.86753 1.90538 1.20813 1.61518 1.73657 1.41871 1.10321 1.52121 1.15838 1.19696 0.97108 1.34381 0.91629 0.87968 1.25257 0.94824 0.97720 1.00161 1.69611 1.01110 1.45022 1.38628 0.85867 0.77953 0.79165 0.81370 1.20421 1.20933 1.19416 0.92463 0.88095 0.92613 0.90225 0.88547 0.88878 0.79166 0.76569 0.92440 0.91814 0.91758 0.90537 0.93940 0.82869 0.89643 0.93872 0.77489 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.27 -3.99 9.98 -24.62 -0.25 -4.23 16 3 C 0.32 4.66 7.85 -16.66 -0.13 4.53 16 4 N -0.36 -4.67 11.90 30.79 0.37 -4.31 16 5 N -0.35 -3.53 3.97 -67.59 -0.27 -3.80 16 6 C 0.10 0.53 11.44 59.85 0.68 1.21 16 7 C 0.13 1.31 10.98 -16.58 -0.18 1.13 16 8 C -0.29 -4.01 6.14 -104.95 -0.64 -4.66 16 9 C 0.60 9.05 7.77 -12.60 -0.10 8.95 16 10 O -0.54 -10.14 16.09 -0.10 0.00 -10.14 16 11 N -0.71 -8.59 4.79 -54.93 -0.26 -8.85 16 12 C 0.15 1.72 2.81 -67.93 -0.19 1.52 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 15 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 16 N -0.67 -10.06 5.85 -115.06 -0.67 -10.73 16 17 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 18 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 19 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 20 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.19 1.18 7.46 -52.48 -0.39 0.79 16 36 H 0.40 4.08 7.52 -40.82 -0.31 3.78 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -37.30 399.36 -5.59 -42.89 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.75 Total: 14.09 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 0.49 Total: 16.32 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.17 Total: -65.34 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.16 Total: -29.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.30 -5.59 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268657401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.099 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds