Wall clock time and date at job start Tue Mar 31 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46961 * 2 1 4 4 C 1.52995 * 109.47210 * 120.00250 * 2 1 3 5 5 N 1.46499 * 109.46953 * 174.99907 * 4 2 1 6 6 C 1.46498 * 120.00442 * 269.99914 * 5 4 2 7 7 C 1.36942 * 119.99950 * 90.00200 * 5 4 2 8 8 H 1.08001 * 119.99505 * 339.78628 * 7 5 4 9 9 C 1.38806 * 120.00303 * 160.05893 * 7 5 4 10 10 N 1.31622 * 119.99794 * 344.58241 * 9 7 5 11 11 Si 1.86794 * 120.00146 * 164.57567 * 9 7 5 12 12 H 1.48492 * 109.47297 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47075 * 120.00217 * 11 9 7 14 14 H 1.48499 * 109.47372 * 240.00211 * 11 9 7 15 15 N 1.46505 * 109.46738 * 240.00257 * 2 1 3 16 16 C 1.34775 * 119.99945 * 85.00038 * 15 2 1 17 17 O 1.21521 * 119.99773 * 359.97438 * 16 15 2 18 18 C 1.48168 * 120.00198 * 179.97438 * 16 15 2 19 19 C 1.39100 * 119.67155 * 179.72123 * 18 16 15 20 20 C 1.39724 * 118.91722 * 179.77421 * 19 18 16 21 21 C 1.48375 * 120.87451 * 180.26119 * 20 19 18 22 22 C 1.39348 * 120.11877 * 359.96704 * 21 20 19 23 23 C 1.38016 * 119.87565 * 179.71728 * 22 21 20 24 24 C 1.38328 * 120.12041 * 0.55816 * 23 22 21 25 25 C 1.38327 * 120.24468 * 359.71686 * 24 23 22 26 26 C 1.38013 * 120.12306 * 0.02562 * 25 24 23 27 27 C 1.39734 * 118.25805 * 0.49889 * 20 19 18 28 28 C 1.38322 * 119.21042 * 359.74492 * 27 20 19 29 29 N 1.31572 * 121.02863 * 0.02562 * 28 27 20 30 30 H 1.08996 * 109.47817 * 59.99799 * 1 2 3 31 31 H 1.09008 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47382 * 299.99329 * 1 2 3 33 33 H 1.08999 * 109.47248 * 55.00310 * 4 2 1 34 34 H 1.09004 * 109.47190 * 294.99851 * 4 2 1 35 35 H 1.09004 * 109.47097 * 264.78752 * 6 5 4 36 36 H 1.09004 * 109.46722 * 24.78302 * 6 5 4 37 37 H 1.09001 * 109.47356 * 144.78126 * 6 5 4 38 38 H 0.97005 * 120.00107 * 179.97438 * 10 9 7 39 39 H 0.97002 * 119.99735 * 264.99247 * 15 2 1 40 40 H 1.07998 * 120.53925 * 0.03038 * 19 18 16 41 41 H 1.08006 * 120.06184 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.93835 * 180.27748 * 23 22 21 43 43 H 1.08001 * 119.87623 * 179.74426 * 24 23 22 44 44 H 1.08002 * 119.93385 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.05916 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.39841 * 179.72815 * 27 20 19 47 47 H 1.08002 * 119.48718 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.2799 0.1648 1.7239 8 1 3.8655 1.1486 1.8879 9 6 5.6045 -0.0932 2.0487 10 7 6.0308 -1.3354 2.1355 11 14 6.7822 1.3224 2.3623 12 1 6.0610 2.6107 2.2035 13 1 7.3189 1.2232 3.7434 14 1 7.9028 1.2589 1.3900 15 7 2.0183 -0.6906 -1.1963 16 6 2.1469 -0.0182 -2.3572 17 8 1.8575 1.1608 -2.4117 18 6 2.6413 -0.7164 -3.5669 19 6 2.7659 -0.0172 -4.7630 20 6 3.2382 -0.6900 -5.8928 21 6 3.3935 0.0149 -7.1892 22 6 3.0669 1.3655 -7.2943 23 6 3.2189 2.0176 -8.5011 24 6 3.6835 1.3302 -9.6079 25 6 4.0038 -0.0119 -9.5107 26 6 3.8607 -0.6727 -8.3075 27 6 3.5555 -2.0454 -5.7712 28 6 3.3980 -2.6683 -4.5463 29 7 2.9551 -2.0048 -3.5000 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6055 -1.7198 1.2950 34 1 1.7517 -0.1584 2.1370 35 1 4.3668 -2.7316 1.3246 36 1 3.4369 -2.4277 -0.1625 37 1 5.0395 -1.6835 0.0527 38 1 6.9567 -1.5158 2.3621 39 1 2.2490 -1.6318 -1.1527 40 1 2.5059 1.0296 -4.8163 41 1 2.6994 1.9019 -6.4319 42 1 2.9703 3.0655 -8.5825 43 1 3.7971 1.8435 -10.5514 44 1 4.3658 -0.5438 -10.3781 45 1 4.1115 -1.7205 -8.2326 46 1 3.9192 -2.6001 -6.6235 47 1 3.6423 -3.7156 -4.4472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268753021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:50 Heat of formation + Delta-G solvation = 52.198566 kcal Electronic energy + Delta-G solvation = -28571.711837 eV Core-core repulsion = 24720.207565 eV Total energy + Delta-G solvation = -3851.504272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.74729 -39.40957 -38.58334 -36.37742 -34.18096 -33.84818 -31.97673 -31.33924 -30.86788 -30.11331 -29.72297 -26.13223 -25.62254 -25.00134 -24.31961 -22.76225 -21.92493 -21.57981 -20.38284 -19.91805 -18.17568 -17.16477 -16.84239 -16.47578 -15.92896 -15.50415 -15.38758 -15.05623 -14.79892 -14.70062 -14.42730 -13.99958 -13.80422 -13.57204 -13.48898 -13.42854 -13.21944 -13.02643 -12.76015 -12.28567 -12.08023 -11.95784 -11.60731 -11.41894 -11.27637 -11.18810 -10.80383 -10.62170 -10.59883 -10.57455 -10.14331 -10.04802 -9.88790 -9.81297 -9.43214 -9.30056 -9.27878 -8.65509 -8.60866 -8.40009 -6.72784 -5.68374 -3.11772 0.28070 0.74367 1.06705 1.61264 2.96453 3.41419 3.45895 3.49142 3.52120 3.53862 4.01078 4.11439 4.27248 4.42349 4.54688 4.62141 4.69411 4.82981 4.84924 4.91115 5.07196 5.23531 5.32312 5.38325 5.43944 5.50896 5.57498 5.65647 5.72965 5.75554 5.80446 5.85570 5.98284 6.11568 6.12651 6.17088 6.22657 6.30243 6.44378 6.47892 6.55914 6.61485 6.74331 6.82157 7.07973 7.42413 7.67362 7.74320 7.86126 8.07626 8.41742 8.63037 9.27193 9.90830 10.37752 11.36465 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002777 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.218818 B =10079.090829 C =10691.109451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.250 4.250 8 H 0.069 0.931 9 C 0.000 4.000 10 N -0.907 5.907 11 Si 0.901 3.099 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.678 5.678 16 C 0.566 3.434 17 O -0.545 6.545 18 C 0.096 3.904 19 C -0.109 4.109 20 C -0.010 4.010 21 C -0.051 4.051 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.103 4.103 27 C -0.151 4.151 28 C 0.105 3.895 29 N -0.455 5.455 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.029 0.971 36 H -0.003 1.003 37 H 0.041 0.959 38 H 0.250 0.750 39 H 0.408 0.592 40 H 0.149 0.851 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.140 0.860 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -1.651 -22.395 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.006 3.994 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.024 3.976 7 C -0.380 4.380 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.553 5.553 11 Si 0.731 3.269 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.329 5.329 16 C 0.350 3.650 17 O -0.423 6.423 18 C -0.042 4.042 19 C -0.129 4.129 20 C -0.018 4.018 21 C -0.051 4.051 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.171 4.171 28 C -0.054 4.054 29 N -0.166 5.166 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.246 0.754 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.904 -1.311 -21.492 22.937 hybrid contribution 1.140 0.658 -0.695 1.488 sum -6.764 -0.653 -22.187 23.205 Atomic orbital electron populations 1.22125 0.96332 1.01425 1.01830 1.22033 0.92296 0.99018 0.86097 0.89621 1.21048 0.85925 0.97618 0.93955 1.43873 0.99072 1.22877 1.66309 1.20807 0.94326 0.88801 0.93713 1.19216 0.92828 0.90378 1.35533 0.91355 1.24919 0.98472 0.96067 1.00301 1.70101 1.15572 1.16942 1.52653 0.86233 0.81291 0.82074 0.77289 1.20304 1.21813 1.21738 1.45917 1.63766 1.14669 1.08524 1.17798 0.78292 0.86033 0.82877 1.90737 1.51644 1.15054 1.84901 1.21278 0.98392 0.90350 0.94195 1.22162 0.97500 1.01857 0.91413 1.19086 0.96668 0.93411 0.92597 1.18669 1.00777 0.93724 0.91932 1.21378 0.98562 0.93636 0.98361 1.21147 0.99554 1.00209 0.92689 1.21285 0.98607 0.94658 0.98712 1.21102 1.00359 0.94870 0.97559 1.21236 0.98744 1.00015 0.92152 1.22372 1.00644 0.94406 0.99716 1.22739 0.94800 1.00308 0.87544 1.67580 1.09140 1.07890 1.32037 0.92895 0.92934 0.91781 0.93996 0.91772 0.95295 0.98434 0.94025 0.93930 0.75368 0.83364 0.85182 0.85537 0.85861 0.85673 0.85498 0.84234 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 2 C 0.11 2.09 2.88 -67.93 -0.20 1.89 16 3 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 4 C 0.14 2.87 5.29 -4.04 -0.02 2.85 16 5 N -0.60 -14.95 2.78 -181.12 -0.50 -15.45 16 6 C 0.17 4.12 8.52 59.85 0.51 4.63 16 7 C -0.25 -6.97 9.67 -15.06 -0.15 -7.11 16 8 H 0.07 1.89 7.87 -52.49 -0.41 1.47 16 9 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 10 N -0.91 -26.78 10.67 55.49 0.59 -26.19 16 11 Si 0.90 22.56 29.58 -169.99 -5.03 17.54 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 15 N -0.68 -12.54 4.51 -54.65 -0.25 -12.79 16 16 C 0.57 10.72 7.78 -12.18 -0.09 10.62 16 17 O -0.55 -11.45 15.98 5.35 0.09 -11.36 16 18 C 0.10 1.57 6.75 -83.06 -0.56 1.01 16 19 C -0.11 -1.54 9.02 -38.71 -0.35 -1.89 16 20 C -0.01 -0.12 5.91 -104.61 -0.62 -0.73 16 21 C -0.05 -0.53 5.88 -104.90 -0.62 -1.15 16 22 C -0.10 -1.02 9.45 -39.25 -0.37 -1.39 16 23 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.11 -0.86 10.04 -39.52 -0.40 -1.25 16 25 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 26 C -0.10 -0.88 9.45 -39.25 -0.37 -1.25 16 27 C -0.15 -1.54 9.51 -38.99 -0.37 -1.91 16 28 C 0.11 1.21 11.17 -17.63 -0.20 1.01 16 29 N -0.45 -6.85 9.53 -9.88 -0.09 -6.95 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 35 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 36 H 0.00 -0.06 5.76 -51.93 -0.30 -0.36 16 37 H 0.04 1.13 7.20 -51.93 -0.37 0.75 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.41 7.37 5.53 -40.82 -0.23 7.14 16 40 H 0.15 2.04 5.92 -52.49 -0.31 1.73 16 41 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 46 H 0.14 0.95 6.33 -52.49 -0.33 0.62 16 47 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -33.58 387.55 -10.01 -43.59 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.33 Total: 5.25 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -4.33 Total: 0.53 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.25 Total: -61.38 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.58 -10.01 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268753021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.785 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds