Wall clock time and date at job start Tue Mar 31 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47407 * 2 1 4 4 C 1.53000 * 109.47206 * 239.99527 * 2 1 3 5 5 N 1.46505 * 109.47298 * 185.00257 * 4 2 1 6 6 C 1.46495 * 120.00064 * 270.00231 * 5 4 2 7 7 C 1.36940 * 119.99825 * 89.99913 * 5 4 2 8 8 H 1.08001 * 120.00480 * 22.35707 * 7 5 4 9 9 C 1.38811 * 119.99582 * 202.35971 * 7 5 4 10 10 N 1.31619 * 120.00217 * 11.23342 * 9 7 5 11 11 Si 1.86802 * 119.99849 * 191.23149 * 9 7 5 12 12 H 1.48507 * 109.47079 * 60.00080 * 11 9 7 13 13 H 1.48503 * 109.47263 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47427 * 300.00345 * 11 9 7 15 15 N 1.46508 * 109.46900 * 119.99476 * 2 1 3 16 16 C 1.34769 * 119.99935 * 275.00120 * 15 2 1 17 17 O 1.21513 * 120.00328 * 359.97438 * 16 15 2 18 18 C 1.48184 * 119.99585 * 180.02562 * 16 15 2 19 19 C 1.39103 * 119.66539 * 179.97438 * 18 16 15 20 20 C 1.39721 * 118.91531 * 179.97438 * 19 18 16 21 21 C 1.48373 * 120.87110 * 179.97438 * 20 19 18 22 22 C 1.39351 * 120.12395 * 359.71980 * 21 20 19 23 23 C 1.38017 * 119.87676 * 179.78930 * 22 21 20 24 24 C 1.38322 * 120.12056 * 0.49157 * 23 22 21 25 25 C 1.38325 * 120.25004 * 359.74663 * 24 23 22 26 26 C 1.38018 * 120.12006 * 0.02562 * 25 24 23 27 27 C 1.39736 * 118.25771 * 0.02562 * 20 19 18 28 28 C 1.38312 * 119.21326 * 0.02562 * 27 20 19 29 29 N 1.31582 * 121.02988 * 359.97438 * 28 27 20 30 30 H 1.09004 * 109.47105 * 300.00513 * 1 2 3 31 31 H 1.09003 * 109.46824 * 60.00604 * 1 2 3 32 32 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46905 * 305.00234 * 4 2 1 34 34 H 1.08994 * 109.47398 * 65.00321 * 4 2 1 35 35 H 1.09004 * 109.47133 * 94.24225 * 6 5 4 36 36 H 1.09001 * 109.47127 * 214.24256 * 6 5 4 37 37 H 1.08999 * 109.47195 * 334.24336 * 6 5 4 38 38 H 0.97005 * 119.99876 * 179.97438 * 10 9 7 39 39 H 0.97008 * 119.99751 * 95.00221 * 15 2 1 40 40 H 1.07999 * 120.54010 * 0.02562 * 19 18 16 41 41 H 1.08006 * 120.05803 * 0.02562 * 22 21 20 42 42 H 1.07994 * 119.93532 * 180.25382 * 23 22 21 43 43 H 1.07998 * 119.87208 * 179.75773 * 24 23 22 44 44 H 1.07995 * 119.94348 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.06050 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.39066 * 180.02562 * 27 20 19 47 47 H 1.08001 * 119.48892 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.3344 0.2338 -1.7612 7 6 4.0849 -1.9160 -0.6021 8 1 3.5339 -2.8402 -0.5086 9 6 5.3861 -1.8326 -0.1257 10 7 5.9800 -0.6615 -0.0353 11 14 6.2942 -3.3824 0.3870 12 1 6.3953 -4.3037 -0.7734 13 1 7.6575 -3.0254 0.8552 14 1 5.5519 -4.0504 1.4861 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8584 1.1610 2.4116 18 6 2.6414 -0.7165 3.5670 19 6 2.7720 -0.0157 4.7614 20 6 3.2392 -0.6897 5.8926 21 6 3.3957 0.0155 7.1886 22 6 3.0815 1.3693 7.2905 23 6 3.2249 2.0192 8.4996 24 6 3.6892 1.3317 9.6064 25 6 4.0072 -0.0110 9.5099 26 6 3.8633 -0.6721 8.3069 27 6 3.5561 -2.0453 5.7711 28 6 3.3987 -2.6682 4.5462 29 7 2.9563 -2.0046 3.4997 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7517 -0.1585 -2.1369 35 1 4.6026 0.9452 -0.9800 36 1 5.2403 -0.2032 -2.1813 37 1 3.7811 0.7483 -2.5468 38 1 6.8891 -0.6032 0.2979 39 1 2.2490 -1.6318 1.1528 40 1 2.5158 1.0322 4.8137 41 1 2.7229 1.9080 6.4258 42 1 2.9778 3.0674 8.5806 43 1 3.8035 1.8452 10.5496 44 1 4.3697 -0.5428 10.3771 45 1 4.1115 -1.7206 8.2327 46 1 3.9197 -2.5999 6.6235 47 1 3.6427 -3.7156 4.4472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268753022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:54 Heat of formation + Delta-G solvation = 50.186325 kcal Electronic energy + Delta-G solvation = -29107.682396 eV Core-core repulsion = 25256.090867 eV Total energy + Delta-G solvation = -3851.591529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.51751 -39.21915 -38.36097 -36.23268 -34.01849 -33.68898 -31.78189 -31.27691 -30.78161 -29.89981 -29.51220 -26.12794 -25.54141 -24.80993 -24.13466 -22.60218 -21.75275 -21.54283 -20.28117 -19.57593 -18.03123 -17.06504 -16.52838 -16.41202 -15.76351 -15.36164 -15.28975 -14.83019 -14.66841 -14.53372 -14.23849 -13.82654 -13.74856 -13.49490 -13.30284 -13.25632 -13.06382 -12.78929 -12.73191 -12.19510 -12.04997 -11.81714 -11.47577 -11.35059 -11.22440 -11.04567 -10.78320 -10.65910 -10.42318 -10.36436 -10.21228 -10.01504 -9.76927 -9.73368 -9.17732 -9.15969 -9.04747 -8.49488 -8.49286 -8.20170 -6.71694 -5.67131 -3.12752 0.46569 0.97665 1.18176 1.80013 3.20523 3.41037 3.46043 3.46264 3.65827 3.75848 4.27219 4.31402 4.50224 4.54054 4.58533 4.73725 4.83866 5.00818 5.03632 5.11409 5.19613 5.38539 5.40921 5.54419 5.58750 5.62300 5.71095 5.74717 5.88776 5.89731 5.95943 6.00770 6.04002 6.21123 6.24801 6.28467 6.30038 6.45681 6.50290 6.55115 6.68747 6.73930 6.79193 6.92735 7.31025 7.43420 7.77708 7.85283 7.95858 8.40139 8.43673 8.93815 9.27596 9.91188 10.40318 11.37432 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003455 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.673425 B = 8102.129734 C = 9346.314820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.254 4.254 8 H 0.067 0.933 9 C 0.012 3.988 10 N -0.902 5.902 11 Si 0.896 3.104 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.279 1.279 15 N -0.662 5.662 16 C 0.569 3.431 17 O -0.557 6.557 18 C 0.103 3.897 19 C -0.110 4.110 20 C -0.014 4.014 21 C -0.046 4.046 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.105 4.105 27 C -0.154 4.154 28 C 0.104 3.896 29 N -0.444 5.444 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.251 0.749 39 H 0.415 0.585 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.138 0.862 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -0.020 15.630 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.383 4.383 8 H 0.084 0.916 9 C -0.187 4.187 10 N -0.546 5.546 11 Si 0.726 3.274 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.205 1.205 15 N -0.310 5.310 16 C 0.353 3.647 17 O -0.437 6.437 18 C -0.035 4.035 19 C -0.131 4.131 20 C -0.022 4.022 21 C -0.046 4.046 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.174 4.174 28 C -0.055 4.055 29 N -0.155 5.155 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.061 0.939 39 H 0.253 0.747 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.155 0.845 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.292 0.422 14.806 16.509 hybrid contribution 1.080 -0.802 1.254 1.839 sum -6.211 -0.380 16.060 17.223 Atomic orbital electron populations 1.22157 0.96736 1.01368 1.01574 1.21930 0.91923 0.98472 0.87006 0.90422 1.21196 0.86074 0.97936 0.93451 1.43907 0.98851 1.22681 1.66625 1.20792 0.92962 0.90460 0.93790 1.19018 0.97098 0.89381 1.32810 0.91575 1.24940 0.98645 0.96051 0.99105 1.70067 1.13301 1.21657 1.49598 0.86463 0.79083 0.83217 0.78634 1.21250 1.21965 1.20492 1.45608 1.62586 1.15047 1.07741 1.17719 0.78105 0.85869 0.82998 1.90696 1.52620 1.15177 1.85192 1.21281 0.97852 0.90326 0.94076 1.22137 0.97781 1.01669 0.91515 1.19046 0.97207 0.93404 0.92544 1.18689 1.00331 0.93639 0.91978 1.21379 0.98696 0.93646 0.98305 1.21128 0.99655 1.00158 0.92678 1.21252 0.98912 0.94653 0.98683 1.21086 1.00450 0.94863 0.97516 1.21243 0.98808 1.00060 0.92186 1.22333 1.00926 0.94449 0.99668 1.22725 0.94970 1.00291 0.87546 1.67622 1.08465 1.08012 1.31392 0.92954 0.92133 0.92920 0.93268 0.92875 0.95470 0.93688 0.98625 0.93918 0.74672 0.83543 0.85187 0.85616 0.85958 0.85769 0.85546 0.84456 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 37.16 0.35 -2.14 16 2 C 0.11 2.23 2.88 -67.93 -0.20 2.03 16 3 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 4 C 0.14 2.81 5.36 -4.04 -0.02 2.79 16 5 N -0.60 -14.64 2.82 -181.12 -0.51 -15.15 16 6 C 0.16 4.10 9.01 59.84 0.54 4.64 16 7 C -0.25 -6.66 8.02 -15.06 -0.12 -6.78 16 8 H 0.07 1.69 7.84 -52.49 -0.41 1.28 16 9 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 10 N -0.90 -26.28 10.58 55.49 0.59 -25.69 16 11 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 N -0.66 -13.81 4.48 -54.64 -0.24 -14.06 16 16 C 0.57 12.22 7.78 -12.18 -0.09 12.13 16 17 O -0.56 -12.85 15.98 5.35 0.09 -12.76 16 18 C 0.10 1.99 6.75 -83.06 -0.56 1.43 16 19 C -0.11 -1.84 9.02 -38.71 -0.35 -2.19 16 20 C -0.01 -0.20 5.91 -104.61 -0.62 -0.82 16 21 C -0.05 -0.57 5.88 -104.89 -0.62 -1.19 16 22 C -0.10 -1.19 9.45 -39.25 -0.37 -1.56 16 23 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 24 C -0.12 -1.02 10.04 -39.52 -0.40 -1.42 16 25 C -0.12 -1.07 10.03 -39.63 -0.40 -1.47 16 26 C -0.10 -1.07 9.45 -39.25 -0.37 -1.44 16 27 C -0.15 -1.98 9.51 -38.99 -0.37 -2.35 16 28 C 0.10 1.54 11.17 -17.63 -0.20 1.35 16 29 N -0.44 -8.24 9.53 -9.88 -0.09 -8.34 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 34 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 35 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 36 H 0.04 1.20 7.19 -51.93 -0.37 0.82 16 37 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.42 8.89 6.72 -40.82 -0.27 8.62 16 40 H 0.15 2.34 5.92 -52.49 -0.31 2.03 16 41 H 0.13 1.48 6.30 -52.48 -0.33 1.14 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 46 H 0.14 1.28 6.33 -52.49 -0.33 0.94 16 47 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -32.59 389.46 -10.08 -42.67 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.47 Total: 9.06 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -4.28 Total: 1.70 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.26 Total: -63.24 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.59 -10.08 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268753022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.853 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds