Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47407 * 2 1 4 4 C 1.53000 * 109.47206 * 239.99527 * 2 1 3 5 5 N 1.46505 * 109.47298 * 185.00257 * 4 2 1 6 6 C 1.46495 * 120.00064 * 270.00231 * 5 4 2 7 7 C 1.36940 * 119.99825 * 89.99913 * 5 4 2 8 8 H 1.08001 * 120.00480 * 22.35707 * 7 5 4 9 9 C 1.38811 * 119.99582 * 202.35971 * 7 5 4 10 10 N 1.31619 * 120.00217 * 11.23342 * 9 7 5 11 11 Si 1.86802 * 119.99849 * 191.23149 * 9 7 5 12 12 H 1.48507 * 109.47079 * 60.00080 * 11 9 7 13 13 H 1.48503 * 109.47263 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47427 * 300.00345 * 11 9 7 15 15 N 1.46508 * 109.46900 * 119.99476 * 2 1 3 16 16 C 1.34769 * 119.99935 * 275.00120 * 15 2 1 17 17 O 1.21513 * 120.00328 * 359.97438 * 16 15 2 18 18 C 1.48184 * 119.99585 * 180.02562 * 16 15 2 19 19 C 1.39103 * 119.66539 * 179.97438 * 18 16 15 20 20 C 1.39721 * 118.91531 * 179.97438 * 19 18 16 21 21 C 1.48373 * 120.87110 * 179.97438 * 20 19 18 22 22 C 1.39351 * 120.12395 * 359.71980 * 21 20 19 23 23 C 1.38017 * 119.87676 * 179.78930 * 22 21 20 24 24 C 1.38322 * 120.12056 * 0.49157 * 23 22 21 25 25 C 1.38325 * 120.25004 * 359.74663 * 24 23 22 26 26 C 1.38018 * 120.12006 * 0.02562 * 25 24 23 27 27 C 1.39736 * 118.25771 * 0.02562 * 20 19 18 28 28 C 1.38312 * 119.21326 * 0.02562 * 27 20 19 29 29 N 1.31582 * 121.02988 * 359.97438 * 28 27 20 30 30 H 1.09004 * 109.47105 * 300.00513 * 1 2 3 31 31 H 1.09003 * 109.46824 * 60.00604 * 1 2 3 32 32 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46905 * 305.00234 * 4 2 1 34 34 H 1.08994 * 109.47398 * 65.00321 * 4 2 1 35 35 H 1.09004 * 109.47133 * 94.24225 * 6 5 4 36 36 H 1.09001 * 109.47127 * 214.24256 * 6 5 4 37 37 H 1.08999 * 109.47195 * 334.24336 * 6 5 4 38 38 H 0.97005 * 119.99876 * 179.97438 * 10 9 7 39 39 H 0.97008 * 119.99751 * 95.00221 * 15 2 1 40 40 H 1.07999 * 120.54010 * 0.02562 * 19 18 16 41 41 H 1.08006 * 120.05803 * 0.02562 * 22 21 20 42 42 H 1.07994 * 119.93532 * 180.25382 * 23 22 21 43 43 H 1.07998 * 119.87208 * 179.75773 * 24 23 22 44 44 H 1.07995 * 119.94348 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.06050 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.39066 * 180.02562 * 27 20 19 47 47 H 1.08001 * 119.48892 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.3344 0.2338 -1.7612 7 6 4.0849 -1.9160 -0.6021 8 1 3.5339 -2.8402 -0.5086 9 6 5.3861 -1.8326 -0.1257 10 7 5.9800 -0.6615 -0.0353 11 14 6.2942 -3.3824 0.3870 12 1 6.3953 -4.3037 -0.7734 13 1 7.6575 -3.0254 0.8552 14 1 5.5519 -4.0504 1.4861 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8584 1.1610 2.4116 18 6 2.6414 -0.7165 3.5670 19 6 2.7720 -0.0157 4.7614 20 6 3.2392 -0.6897 5.8926 21 6 3.3957 0.0155 7.1886 22 6 3.0815 1.3693 7.2905 23 6 3.2249 2.0192 8.4996 24 6 3.6892 1.3317 9.6064 25 6 4.0072 -0.0110 9.5099 26 6 3.8633 -0.6721 8.3069 27 6 3.5561 -2.0453 5.7711 28 6 3.3987 -2.6682 4.5462 29 7 2.9563 -2.0046 3.4997 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7517 -0.1585 -2.1369 35 1 4.6026 0.9452 -0.9800 36 1 5.2403 -0.2032 -2.1813 37 1 3.7811 0.7483 -2.5468 38 1 6.8891 -0.6032 0.2979 39 1 2.2490 -1.6318 1.1528 40 1 2.5158 1.0322 4.8137 41 1 2.7229 1.9080 6.4258 42 1 2.9778 3.0674 8.5806 43 1 3.8035 1.8452 10.5496 44 1 4.3697 -0.5428 10.3771 45 1 4.1115 -1.7206 8.2327 46 1 3.9197 -2.5999 6.6235 47 1 3.6427 -3.7156 4.4472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268753022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = 31.191892 kcal Electronic energy + Delta-G solvation = -29108.506056 eV Core-core repulsion = 25256.090867 eV Total energy + Delta-G solvation = -3852.415189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74257 -40.42468 -39.54563 -38.01141 -35.76230 -34.80470 -33.23492 -32.74686 -31.89337 -31.28469 -30.54282 -28.03361 -27.36697 -26.05776 -25.17351 -23.81235 -23.14992 -22.67798 -21.72518 -21.15281 -19.26166 -18.62729 -18.08210 -17.60137 -16.88297 -16.78546 -16.67006 -16.32397 -16.13688 -15.59201 -15.49294 -15.30136 -15.06329 -15.04191 -14.61856 -14.47661 -14.29579 -14.12823 -13.87455 -13.78754 -13.34824 -13.11865 -13.07938 -12.85818 -12.67637 -12.55558 -12.22198 -12.15488 -11.99296 -11.97846 -11.84879 -11.68545 -11.45085 -11.25708 -10.57187 -10.52870 -10.32351 -9.91909 -9.82572 -9.39163 -8.74576 -7.75753 -5.22395 -0.55027 -0.25160 0.44048 0.82382 1.47445 1.49642 1.54350 1.79576 2.27722 2.55885 2.74769 3.04009 3.19177 3.37365 3.41876 3.62286 3.74571 3.86254 3.94797 4.02474 4.05431 4.14899 4.24260 4.39567 4.44619 4.51103 4.53776 4.55095 4.64500 4.70069 4.75343 4.84259 4.90123 4.96892 4.99303 5.02849 5.10191 5.16051 5.34000 5.38322 5.46507 5.54494 5.55864 5.60413 5.67101 5.71528 5.75044 6.01235 6.36389 6.57710 6.88607 7.20030 7.30544 7.92165 8.36929 9.27841 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003455 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.673425 B = 8102.129734 C = 9346.314820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.115 3.885 3 H 0.044 0.956 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.244 4.244 8 H 0.076 0.924 9 C -0.043 4.043 10 N -0.937 5.937 11 Si 0.951 3.049 12 H -0.280 1.280 13 H -0.307 1.307 14 H -0.264 1.264 15 N -0.664 5.664 16 C 0.559 3.441 17 O -0.588 6.588 18 C 0.071 3.929 19 C -0.123 4.123 20 C -0.010 4.010 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.105 4.105 27 C -0.136 4.136 28 C 0.095 3.905 29 N -0.475 5.475 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.079 0.921 35 H -0.010 1.010 36 H 0.020 0.980 37 H 0.029 0.971 38 H 0.239 0.761 39 H 0.412 0.588 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.183 0.817 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 -2.084 17.972 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.062 0.938 4 C 0.014 3.986 5 N -0.335 5.335 6 C 0.035 3.965 7 C -0.374 4.374 8 H 0.093 0.907 9 C -0.238 4.238 10 N -0.585 5.585 11 Si 0.780 3.220 12 H -0.206 1.206 13 H -0.234 1.234 14 H -0.189 1.189 15 N -0.311 5.311 16 C 0.344 3.656 17 O -0.470 6.470 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.018 4.018 21 C -0.073 4.073 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.155 4.155 28 C -0.065 4.065 29 N -0.186 5.186 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.008 0.992 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.250 0.750 40 H 0.156 0.844 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.170 0.830 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.200 0.800 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.882 -1.660 17.127 18.926 hybrid contribution 1.209 -0.125 0.644 1.376 sum -6.672 -1.786 17.771 19.066 Atomic orbital electron populations 1.22028 0.93391 1.02708 1.02297 1.21888 0.94459 0.96348 0.86505 0.93783 1.21406 0.83342 0.99386 0.94421 1.44141 1.00848 1.22072 1.66423 1.20492 0.92807 0.89896 0.93345 1.19327 0.96947 0.90141 1.30964 0.90652 1.25612 0.99772 0.98282 1.00152 1.70276 1.12883 1.23619 1.51675 0.85565 0.77300 0.80386 0.78742 1.20604 1.23407 1.18932 1.45682 1.62560 1.14799 1.08074 1.18209 0.77636 0.85762 0.83979 1.90647 1.54091 1.16407 1.85889 1.21004 1.00544 0.91257 0.93825 1.22161 0.98705 1.01537 0.92010 1.19331 0.95806 0.94139 0.92561 1.18738 1.02702 0.94019 0.91871 1.21472 0.99698 0.93999 0.98973 1.21391 0.99597 1.01157 0.92315 1.21677 0.97055 0.94920 0.99302 1.21504 0.99409 0.95022 0.97969 1.21538 0.97866 1.01137 0.91778 1.22774 0.98621 0.93803 1.00298 1.23341 0.94144 1.01497 0.87484 1.67525 1.09944 1.07759 1.33421 0.94193 0.89436 0.91185 0.91502 0.90274 0.99209 0.96143 0.95216 0.95156 0.75029 0.84388 0.86561 0.84006 0.83041 0.82633 0.83316 0.80004 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.48 71.98 0.68 -3.73 16 2 C 0.12 4.53 2.88 44.99 0.13 4.66 16 3 H 0.04 2.03 7.58 -2.39 -0.02 2.01 16 4 C 0.14 5.44 5.36 86.38 0.46 5.90 16 5 N -0.61 -30.06 2.82 -726.93 -2.05 -32.11 16 6 C 0.18 9.17 9.01 127.77 1.15 10.32 16 7 C -0.24 -12.82 8.02 84.03 0.67 -12.15 16 8 H 0.08 3.78 7.84 -2.91 -0.02 3.76 16 9 C -0.04 -2.41 5.13 84.86 0.44 -1.97 16 10 N -0.94 -56.80 10.58 21.65 0.23 -56.58 16 11 Si 0.95 44.97 29.57 68.60 2.03 47.00 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 N -0.66 -28.63 4.48 -445.09 -1.99 -30.63 16 16 C 0.56 25.47 7.78 86.89 0.68 26.14 16 17 O -0.59 -29.14 15.98 -3.76 -0.06 -29.20 16 18 C 0.07 2.86 6.75 41.85 0.28 3.14 16 19 C -0.12 -4.36 9.02 22.84 0.21 -4.15 16 20 C -0.01 -0.30 5.91 -19.86 -0.12 -0.41 16 21 C -0.07 -1.74 5.88 -20.04 -0.12 -1.86 16 22 C -0.12 -2.90 9.45 22.49 0.21 -2.69 16 23 C -0.13 -2.29 10.03 22.24 0.22 -2.07 16 24 C -0.11 -1.59 10.04 22.31 0.22 -1.37 16 25 C -0.12 -1.68 10.03 22.24 0.22 -1.46 16 26 C -0.11 -1.83 9.45 22.49 0.21 -1.61 16 27 C -0.14 -3.20 9.51 22.65 0.22 -2.98 16 28 C 0.09 2.68 11.17 84.75 0.95 3.62 16 29 N -0.47 -17.86 9.53 -185.18 -1.76 -19.63 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 34 H 0.08 2.65 7.86 -2.39 -0.02 2.63 16 35 H -0.01 -0.61 7.42 -2.38 -0.02 -0.63 16 36 H 0.02 1.10 7.19 -2.39 -0.02 1.09 16 37 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 38 H 0.24 14.47 8.31 -92.70 -0.77 13.70 16 39 H 0.41 18.02 6.72 -92.70 -0.62 17.40 16 40 H 0.14 4.92 5.92 -2.91 -0.02 4.91 16 41 H 0.12 2.92 6.30 -2.91 -0.02 2.90 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.15 1.79 6.29 -2.91 -0.02 1.77 16 46 H 0.18 2.55 6.33 -2.91 -0.02 2.54 16 47 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -75.44 389.46 3.48 -71.96 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.37 Total: 31.84 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.72 Total: 17.34 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -5.58 Total: -138.94 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.06 Total: -29.20 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -75.44 3.48 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268753022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.152 kcal (2) G-P(sol) polarization free energy of solvation -75.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds