Wall clock time and date at job start Tue Mar 31 2020 22:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47419 * 2 1 4 4 N 1.46505 * 109.46962 * 240.00598 * 2 1 3 5 5 C 1.36936 * 119.99706 * 85.00109 * 4 2 1 6 6 H 1.07993 * 120.00511 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99597 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99912 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47241 * 90.00062 * 9 7 5 11 11 H 1.48502 * 109.47073 * 210.00548 * 9 7 5 12 12 H 1.48509 * 109.46900 * 329.99877 * 9 7 5 13 13 C 1.52992 * 109.47330 * 120.00575 * 2 1 3 14 14 H 1.09003 * 110.88759 * 63.87984 * 13 2 1 15 15 C 1.55157 * 111.00745 * 299.99756 * 13 2 1 16 16 C 1.54316 * 102.94512 * 206.38507 * 15 13 2 17 17 N 1.47018 * 107.27323 * 22.19202 * 16 15 13 18 18 C 1.34775 * 125.65134 * 181.02027 * 17 16 15 19 19 O 1.21543 * 120.00128 * 180.02562 * 18 17 16 20 20 C 1.47949 * 119.99901 * 0.02993 * 18 17 16 21 21 N 1.32197 * 120.15834 * 354.38918 * 20 18 17 22 22 C 1.32026 * 122.68244 * 179.97438 * 21 20 18 23 23 C 1.36685 * 122.02760 * 359.73611 * 22 21 20 24 24 C 1.40534 * 118.84782 * 0.50923 * 23 22 21 25 25 C 1.40322 * 122.21915 * 179.78201 * 24 23 22 26 26 C 1.36198 * 119.45368 * 179.72100 * 25 24 23 27 27 C 1.39384 * 121.00010 * 0.02562 * 26 25 24 28 28 C 1.36262 * 121.08204 * 0.02562 * 27 26 25 29 29 C 1.40091 * 119.53840 * 359.97438 * 28 27 26 30 30 C 1.47423 * 108.70394 * 1.28628 * 17 16 15 31 31 H 1.09000 * 109.47230 * 59.98952 * 1 2 3 32 32 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46907 * 299.99786 * 1 2 3 34 34 H 0.96994 * 119.99970 * 264.99788 * 4 2 1 35 35 H 0.96998 * 119.99930 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71863 * 88.01995 * 15 13 2 37 37 H 1.09006 * 110.86885 * 324.82328 * 15 13 2 38 38 H 1.09007 * 109.88407 * 262.77322 * 16 15 13 39 39 H 1.09000 * 110.01362 * 141.68264 * 16 15 13 40 40 H 1.08003 * 118.98366 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.57302 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.27078 * 359.73082 * 25 24 23 43 43 H 1.07998 * 119.50351 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.45947 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.22553 * 179.97438 * 28 27 26 46 46 H 1.09005 * 110.36623 * 94.48039 * 30 17 16 47 47 H 1.08994 * 110.37170 * 216.80520 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0072 -2.3758 6 1 1.8919 1.0405 -2.4243 7 6 2.6112 -0.6616 -3.5094 8 7 2.7365 -0.0050 -4.6433 9 14 3.0555 -2.4741 -3.4257 10 1 1.8581 -3.2925 -3.7446 11 1 4.1305 -2.7661 -4.4077 12 1 3.5311 -2.8046 -2.0582 13 6 2.0400 -0.7213 1.2491 14 1 1.7469 -1.7711 1.2385 15 6 1.5427 -0.0180 2.5396 16 6 2.6245 -0.3904 3.5751 17 7 3.8423 -0.7382 2.8283 18 6 5.0091 -1.1388 3.3710 19 8 5.9546 -1.4010 2.6538 20 6 5.1389 -1.2595 4.8399 21 7 4.1514 -0.8705 5.6281 22 6 4.2138 -0.9560 6.9441 23 6 5.3093 -1.4612 7.5866 24 6 6.4058 -1.8923 6.8205 25 6 7.5674 -2.4179 7.4064 26 6 8.5946 -2.8241 6.6095 27 6 8.5091 -2.7250 5.2219 28 6 7.3965 -2.2185 4.6200 29 6 6.3196 -1.7905 5.4072 30 6 3.5777 -0.5699 1.3878 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6316 -1.1528 35 1 3.0598 -0.4622 -5.4353 36 1 0.5702 -0.4075 2.8407 37 1 1.4976 1.0622 2.4004 38 1 2.2944 -1.2456 4.1649 39 1 2.8213 0.4580 4.2306 40 1 3.3713 -0.6207 7.5308 41 1 5.3350 -1.5207 8.6646 42 1 7.6463 -2.4998 8.4804 43 1 9.4891 -3.2284 7.0597 44 1 9.3384 -3.0550 4.6137 45 1 7.3452 -2.1476 3.5435 46 1 3.8952 0.4189 1.0567 47 1 4.0879 -1.3445 0.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271519616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:44 Heat of formation + Delta-G solvation = 50.201032 kcal Electronic energy + Delta-G solvation = -28889.232158 eV Core-core repulsion = 25037.641266 eV Total energy + Delta-G solvation = -3851.590891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41780 -39.73001 -37.86824 -37.67137 -35.34402 -33.28816 -32.47666 -31.48192 -30.88483 -29.96149 -28.87411 -28.35056 -25.52775 -23.93833 -23.76371 -23.38968 -22.51224 -21.30484 -19.92036 -19.81995 -18.31004 -17.65060 -17.52760 -17.04712 -16.22230 -16.12877 -15.84341 -15.15823 -14.87238 -14.50838 -14.17773 -14.04604 -14.01122 -13.79420 -13.46871 -13.35056 -12.95027 -12.77861 -12.54369 -12.45459 -12.39333 -12.13466 -12.07797 -11.80733 -11.68736 -11.50330 -10.97805 -10.82468 -10.57611 -10.53494 -10.47149 -10.27310 -10.06526 -9.89643 -9.54883 -9.52777 -9.44263 -8.90937 -8.62523 -8.34911 -7.24700 -5.73711 -3.09183 -0.22869 0.56598 1.44209 2.45176 2.83375 3.01287 3.41635 3.45049 3.49652 3.80695 3.84251 4.21356 4.33862 4.45281 4.56662 4.62836 4.66316 4.79653 4.80433 4.90205 4.99422 5.02456 5.10414 5.36175 5.38909 5.49470 5.52672 5.56013 5.64696 5.71028 5.79094 5.82133 5.88221 5.93253 6.04582 6.09419 6.11866 6.17608 6.18437 6.30176 6.31658 6.36097 6.42236 6.52627 6.57479 6.80409 7.01247 7.39100 7.53732 8.02049 8.07664 8.45303 9.23664 9.96441 10.15741 11.44686 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002805 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.501435 B = 9978.030803 C =11430.698370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.276 1.276 13 C -0.106 4.106 14 H 0.080 0.920 15 C -0.128 4.128 16 C 0.116 3.884 17 N -0.593 5.593 18 C 0.580 3.420 19 O -0.530 6.530 20 C 0.132 3.868 21 N -0.452 5.452 22 C 0.071 3.929 23 C -0.134 4.134 24 C -0.031 4.031 25 C -0.122 4.122 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.089 4.089 29 C -0.072 4.072 30 C 0.115 3.885 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.174 0.826 46 H 0.079 0.921 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -3.823 29.842 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.202 1.202 13 C -0.126 4.126 14 H 0.099 0.901 15 C -0.167 4.167 16 C -0.006 4.006 17 N -0.324 5.324 18 C 0.367 3.633 19 O -0.408 6.408 20 C -0.020 4.020 21 N -0.164 5.164 22 C -0.075 4.075 23 C -0.154 4.154 24 C -0.036 4.036 25 C -0.140 4.140 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.108 4.108 29 C -0.075 4.075 30 C -0.006 4.006 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.097 0.903 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.884 -3.433 29.013 29.621 hybrid contribution 1.026 -1.684 0.524 2.040 sum 5.911 -5.116 29.537 30.554 Atomic orbital electron populations 1.22403 0.98523 1.00911 1.00562 1.20128 0.92125 0.95460 0.84285 0.92392 1.42804 1.79749 1.09484 1.07148 1.19041 1.36923 0.95564 0.85505 0.89195 1.24655 1.01422 0.97404 0.95583 1.69697 1.52733 1.35555 1.00255 0.86583 0.78063 0.86945 0.77158 1.21218 1.21795 1.20234 1.22751 0.93557 1.00745 0.95522 0.90131 1.22776 0.98031 1.01535 0.94336 1.22148 0.83467 1.01047 0.93973 1.48424 1.11316 1.63535 1.09102 1.17374 0.82148 0.78151 0.85640 1.90614 1.37410 1.51416 1.61357 1.21342 0.90125 0.96594 0.93909 1.67546 1.28522 1.14059 1.06224 1.22241 0.97996 0.97412 0.89850 1.22136 0.93615 0.98530 1.01106 1.18196 0.95179 0.97964 0.92250 1.20914 0.92778 1.00275 1.00012 1.21092 0.98547 0.97533 0.94022 1.21149 0.98728 0.99640 0.94667 1.22234 0.91236 0.93779 1.03547 1.18688 0.95364 1.00275 0.93175 1.22449 0.96148 1.02999 0.79046 0.92309 0.93633 0.93953 0.80693 0.93107 0.90025 0.90263 0.91113 0.90448 0.82255 0.84089 0.85025 0.85510 0.85296 0.80925 0.90324 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.27 37.16 0.34 -2.33 16 2 C 0.19 3.41 2.43 -67.93 -0.17 3.24 16 3 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 4 N -0.75 -17.15 4.78 -53.43 -0.26 -17.41 16 5 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 7 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 9 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 13 C -0.11 -1.57 2.67 -88.35 -0.24 -1.80 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.13 -1.46 5.28 -24.90 -0.13 -1.59 16 16 C 0.12 1.37 5.41 -3.07 -0.02 1.35 16 17 N -0.59 -8.77 3.32 -171.45 -0.57 -9.34 16 18 C 0.58 9.15 7.81 -12.28 -0.10 9.05 16 19 O -0.53 -9.56 13.69 5.33 0.07 -9.49 16 20 C 0.13 1.79 6.77 -82.55 -0.56 1.23 16 21 N -0.45 -5.21 6.88 -9.81 -0.07 -5.28 16 22 C 0.07 0.61 11.06 -18.03 -0.20 0.41 16 23 C -0.13 -1.05 9.88 -39.28 -0.39 -1.44 16 24 C -0.03 -0.31 5.75 -106.83 -0.61 -0.92 16 25 C -0.12 -0.97 9.82 -39.53 -0.39 -1.36 16 26 C -0.09 -0.73 9.95 -39.89 -0.40 -1.13 16 27 C -0.12 -1.19 9.95 -39.87 -0.40 -1.59 16 28 C -0.09 -1.11 9.23 -39.60 -0.37 -1.47 16 29 C -0.07 -0.91 5.76 -106.60 -0.61 -1.53 16 30 C 0.11 1.88 6.24 -2.41 -0.02 1.86 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.56 7.28 -51.93 -0.38 0.18 16 34 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 36 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.07 0.80 7.59 -51.93 -0.39 0.41 16 39 H 0.08 0.87 7.41 -51.93 -0.38 0.48 16 40 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.17 2.46 4.96 -52.49 -0.26 2.20 16 46 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 47 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -33.58 378.48 -10.25 -43.84 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.71 Total: 7.74 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.49 Total: -4.78 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.12 Total: -60.69 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.58 -10.25 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271519616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.040 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds