Wall clock time and date at job start Tue Mar 31 2020 22:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47419 * 2 1 4 4 N 1.46505 * 109.46962 * 240.00598 * 2 1 3 5 5 C 1.36936 * 119.99706 * 85.00109 * 4 2 1 6 6 H 1.07993 * 120.00511 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99597 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99912 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47241 * 90.00062 * 9 7 5 11 11 H 1.48502 * 109.47073 * 210.00548 * 9 7 5 12 12 H 1.48509 * 109.46900 * 329.99877 * 9 7 5 13 13 C 1.52992 * 109.47330 * 120.00575 * 2 1 3 14 14 H 1.09003 * 110.88759 * 63.87984 * 13 2 1 15 15 C 1.55157 * 111.00745 * 299.99756 * 13 2 1 16 16 C 1.54316 * 102.94512 * 206.38507 * 15 13 2 17 17 N 1.47018 * 107.27323 * 22.19202 * 16 15 13 18 18 C 1.34775 * 125.65134 * 181.02027 * 17 16 15 19 19 O 1.21543 * 120.00128 * 180.02562 * 18 17 16 20 20 C 1.47949 * 119.99901 * 0.02993 * 18 17 16 21 21 N 1.32197 * 120.15834 * 354.38918 * 20 18 17 22 22 C 1.32026 * 122.68244 * 179.97438 * 21 20 18 23 23 C 1.36685 * 122.02760 * 359.73611 * 22 21 20 24 24 C 1.40534 * 118.84782 * 0.50923 * 23 22 21 25 25 C 1.40322 * 122.21915 * 179.78201 * 24 23 22 26 26 C 1.36198 * 119.45368 * 179.72100 * 25 24 23 27 27 C 1.39384 * 121.00010 * 0.02562 * 26 25 24 28 28 C 1.36262 * 121.08204 * 0.02562 * 27 26 25 29 29 C 1.40091 * 119.53840 * 359.97438 * 28 27 26 30 30 C 1.47423 * 108.70394 * 1.28628 * 17 16 15 31 31 H 1.09000 * 109.47230 * 59.98952 * 1 2 3 32 32 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46907 * 299.99786 * 1 2 3 34 34 H 0.96994 * 119.99970 * 264.99788 * 4 2 1 35 35 H 0.96998 * 119.99930 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71863 * 88.01995 * 15 13 2 37 37 H 1.09006 * 110.86885 * 324.82328 * 15 13 2 38 38 H 1.09007 * 109.88407 * 262.77322 * 16 15 13 39 39 H 1.09000 * 110.01362 * 141.68264 * 16 15 13 40 40 H 1.08003 * 118.98366 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.57302 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.27078 * 359.73082 * 25 24 23 43 43 H 1.07998 * 119.50351 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.45947 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.22553 * 179.97438 * 28 27 26 46 46 H 1.09005 * 110.36623 * 94.48039 * 30 17 16 47 47 H 1.08994 * 110.37170 * 216.80520 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0072 -2.3758 6 1 1.8919 1.0405 -2.4243 7 6 2.6112 -0.6616 -3.5094 8 7 2.7365 -0.0050 -4.6433 9 14 3.0555 -2.4741 -3.4257 10 1 1.8581 -3.2925 -3.7446 11 1 4.1305 -2.7661 -4.4077 12 1 3.5311 -2.8046 -2.0582 13 6 2.0400 -0.7213 1.2491 14 1 1.7469 -1.7711 1.2385 15 6 1.5427 -0.0180 2.5396 16 6 2.6245 -0.3904 3.5751 17 7 3.8423 -0.7382 2.8283 18 6 5.0091 -1.1388 3.3710 19 8 5.9546 -1.4010 2.6538 20 6 5.1389 -1.2595 4.8399 21 7 4.1514 -0.8705 5.6281 22 6 4.2138 -0.9560 6.9441 23 6 5.3093 -1.4612 7.5866 24 6 6.4058 -1.8923 6.8205 25 6 7.5674 -2.4179 7.4064 26 6 8.5946 -2.8241 6.6095 27 6 8.5091 -2.7250 5.2219 28 6 7.3965 -2.2185 4.6200 29 6 6.3196 -1.7905 5.4072 30 6 3.5777 -0.5699 1.3878 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6316 -1.1528 35 1 3.0598 -0.4622 -5.4353 36 1 0.5702 -0.4075 2.8407 37 1 1.4976 1.0622 2.4004 38 1 2.2944 -1.2456 4.1649 39 1 2.8213 0.4580 4.2306 40 1 3.3713 -0.6207 7.5308 41 1 5.3350 -1.5207 8.6646 42 1 7.6463 -2.4998 8.4804 43 1 9.4891 -3.2284 7.0597 44 1 9.3384 -3.0550 4.6137 45 1 7.3452 -2.1476 3.5435 46 1 3.8952 0.4189 1.0567 47 1 4.0879 -1.3445 0.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271519616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:43 Heat of formation + Delta-G solvation = 29.333842 kcal Electronic energy + Delta-G solvation = -28890.137027 eV Core-core repulsion = 25037.641266 eV Total energy + Delta-G solvation = -3852.495761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.24274 -40.79894 -39.12105 -38.39845 -36.92757 -34.39834 -33.97003 -32.48515 -32.16906 -30.85189 -30.29375 -29.57062 -26.46793 -25.64953 -24.52991 -24.42700 -23.38662 -22.74267 -21.31262 -20.90242 -19.62663 -19.05898 -18.36685 -17.98977 -17.35360 -17.09406 -16.75819 -16.67414 -16.07025 -15.57742 -15.54283 -15.20686 -14.86333 -14.72389 -14.67029 -14.48326 -14.23622 -14.08535 -13.90345 -13.78221 -13.56465 -13.27204 -13.16194 -12.98658 -12.82560 -12.52523 -12.49407 -12.42646 -12.03456 -11.93748 -11.75322 -11.72432 -11.39437 -11.21197 -11.05717 -10.97357 -10.43278 -10.17201 -9.76420 -9.29856 -9.07772 -8.01439 -5.32771 -1.00380 -0.13756 0.66225 1.35655 1.38518 1.44691 1.57586 1.75126 2.16339 2.47785 2.94796 3.05276 3.30140 3.40961 3.56668 3.64842 3.67654 3.76337 3.80190 3.88049 3.98381 4.16630 4.25721 4.35806 4.40494 4.42584 4.45856 4.52469 4.61775 4.71514 4.73287 4.81757 4.84559 4.95647 4.99942 5.04072 5.08773 5.09278 5.12914 5.26440 5.32154 5.38150 5.41315 5.51576 5.59516 5.62857 5.80354 5.87138 6.23470 6.36042 6.65887 6.97586 7.09881 7.87498 8.04375 9.20492 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002805 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.501435 B = 9978.030803 C =11430.698370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.046 0.954 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.260 1.260 13 C -0.095 4.095 14 H 0.085 0.915 15 C -0.115 4.115 16 C 0.121 3.879 17 N -0.596 5.596 18 C 0.569 3.431 19 O -0.570 6.570 20 C 0.093 3.907 21 N -0.451 5.451 22 C 0.055 3.945 23 C -0.104 4.104 24 C -0.053 4.053 25 C -0.106 4.106 26 C -0.101 4.101 27 C -0.114 4.114 28 C -0.134 4.134 29 C -0.087 4.087 30 C 0.116 3.884 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.362 0.638 35 H 0.256 0.744 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.198 0.802 41 H 0.187 0.813 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.061 0.939 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 -5.064 35.628 36.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 H 0.064 0.936 4 N -0.397 5.397 5 C -0.349 4.349 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.637 5.637 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.185 1.185 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.154 4.154 16 C -0.001 4.001 17 N -0.326 5.326 18 C 0.358 3.642 19 O -0.451 6.451 20 C -0.057 4.057 21 N -0.163 5.163 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.058 4.058 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.153 4.153 29 C -0.090 4.090 30 C -0.006 4.006 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.215 0.785 41 H 0.205 0.795 42 H 0.190 0.810 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.079 0.921 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.050 -4.670 34.864 35.407 hybrid contribution 1.327 -1.213 -1.062 2.088 sum 5.377 -5.883 33.802 34.729 Atomic orbital electron populations 1.22252 0.96277 1.01551 1.01258 1.20378 0.93538 0.94801 0.83725 0.93563 1.42873 1.80001 1.09559 1.07247 1.19017 1.34287 0.94460 0.87088 0.92175 1.25400 1.02816 1.01954 0.95411 1.69868 1.55198 1.37471 1.01116 0.85513 0.77658 0.81674 0.77554 1.20238 1.22697 1.18524 1.22577 0.92108 1.01046 0.95718 0.89659 1.22810 0.99150 1.01792 0.91606 1.22280 0.82120 1.01775 0.93906 1.48516 1.12217 1.63508 1.08409 1.17977 0.81730 0.77392 0.87092 1.90597 1.38714 1.53018 1.62748 1.20898 0.91854 1.00456 0.92476 1.67447 1.27872 1.13275 1.07716 1.22922 0.99740 0.97676 0.88860 1.22671 0.91762 0.94831 1.03109 1.18591 0.97115 0.98980 0.91125 1.21422 0.91312 0.97654 1.01964 1.21460 1.00117 0.97573 0.92872 1.21423 0.97807 0.97739 0.96279 1.22018 0.93367 0.97547 1.02393 1.18867 0.94915 1.00386 0.94855 1.22243 0.97270 1.00817 0.80299 0.95013 0.92978 0.89844 0.80549 0.93543 0.86873 0.89416 0.90084 0.89523 0.78528 0.79532 0.80954 0.82065 0.84088 0.84173 0.92090 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.27 71.98 0.67 -4.08 16 2 C 0.18 6.55 2.43 44.99 0.11 6.66 16 3 H 0.05 1.77 8.01 -2.38 -0.02 1.75 16 4 N -0.75 -35.08 4.78 -322.94 -1.54 -36.62 16 5 C -0.22 -12.47 10.41 84.04 0.87 -11.59 16 6 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 7 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.99 -64.71 13.97 21.65 0.30 -64.41 16 9 Si 0.95 47.71 27.74 68.60 1.90 49.61 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 12 H -0.26 -12.22 6.52 99.48 0.65 -11.58 16 13 C -0.09 -2.73 2.67 -9.33 -0.02 -2.76 16 14 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.12 -2.31 5.28 31.78 0.17 -2.14 16 16 C 0.12 2.65 5.41 86.73 0.47 3.12 16 17 N -0.60 -18.24 3.32 -814.64 -2.71 -20.95 16 18 C 0.57 19.30 7.81 86.82 0.68 19.98 16 19 O -0.57 -22.97 13.69 -3.85 -0.05 -23.02 16 20 C 0.09 2.57 6.77 42.43 0.29 2.86 16 21 N -0.45 -9.69 6.88 -184.95 -1.27 -10.96 16 22 C 0.05 0.74 11.06 84.30 0.93 1.67 16 23 C -0.10 -1.16 9.88 22.47 0.22 -0.94 16 24 C -0.05 -0.92 5.75 -21.29 -0.12 -1.04 16 25 C -0.11 -1.25 9.82 22.30 0.22 -1.03 16 26 C -0.10 -1.30 9.95 22.07 0.22 -1.08 16 27 C -0.11 -2.19 9.95 22.09 0.22 -1.97 16 28 C -0.13 -3.60 9.23 22.26 0.21 -3.39 16 29 C -0.09 -2.23 5.76 -21.14 -0.12 -2.36 16 30 C 0.12 4.00 6.24 86.93 0.54 4.54 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.90 7.28 -2.39 -0.02 1.88 16 34 H 0.36 16.63 5.66 -92.71 -0.52 16.10 16 35 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 36 H 0.11 1.64 8.11 -2.39 -0.02 1.63 16 37 H 0.09 1.66 8.04 -2.38 -0.02 1.64 16 38 H 0.08 1.64 7.59 -2.38 -0.02 1.62 16 39 H 0.09 1.77 7.41 -2.39 -0.02 1.75 16 40 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.14 4.63 4.96 -3.00 -0.01 4.62 16 46 H 0.06 2.26 7.99 -2.38 -0.02 2.24 16 47 H 0.05 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -81.06 378.48 3.04 -78.02 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.40 Total: 25.31 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.01 Total: 3.01 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -5.22 Total: -132.93 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.90 Total: 49.61 kcal Total: -81.06 3.04 -78.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271519616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.354 kcal (2) G-P(sol) polarization free energy of solvation -81.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds