Wall clock time and date at job start Tue Mar 31 2020 22:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47126 * 2 1 4 4 N 1.46509 * 109.46913 * 240.00401 * 2 1 3 5 5 C 1.36938 * 119.99831 * 85.27258 * 4 2 1 6 6 H 1.08000 * 120.00225 * 359.72267 * 5 4 2 7 7 C 1.38812 * 119.99880 * 179.72806 * 5 4 2 8 8 N 1.31614 * 119.99809 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47248 * 89.99760 * 9 7 5 11 11 H 1.48496 * 109.47038 * 209.99780 * 9 7 5 12 12 H 1.48506 * 109.46974 * 329.99485 * 9 7 5 13 13 C 1.52994 * 109.47593 * 120.00419 * 2 1 3 14 14 H 1.09000 * 110.89180 * 179.29611 * 13 2 1 15 15 C 1.55157 * 111.00551 * 303.18082 * 13 2 1 16 16 C 1.54369 * 102.92459 * 153.54681 * 15 13 2 17 17 N 1.47022 * 107.28669 * 337.85953 * 16 15 13 18 18 C 1.34772 * 125.64931 * 178.87565 * 17 16 15 19 19 O 1.21546 * 120.00191 * 180.02562 * 18 17 16 20 20 C 1.47952 * 120.00187 * 0.04171 * 18 17 16 21 21 N 1.32206 * 120.15129 * 354.09582 * 20 18 17 22 22 C 1.32033 * 122.67125 * 179.74776 * 21 20 18 23 23 C 1.36686 * 122.03328 * 0.54416 * 22 21 20 24 24 C 1.40536 * 118.84654 * 359.74099 * 23 22 21 25 25 C 1.40320 * 122.22310 * 179.97438 * 24 23 22 26 26 C 1.36206 * 119.45052 * 180.02562 * 25 24 23 27 27 C 1.39379 * 121.00444 * 0.02562 * 26 25 24 28 28 C 1.36255 * 121.08066 * 359.95333 * 27 26 25 29 29 C 1.40091 * 119.54013 * 0.04497 * 28 27 26 30 30 C 1.47428 * 108.70428 * 358.90979 * 17 16 15 31 31 H 1.09002 * 109.47473 * 59.99356 * 1 2 3 32 32 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46437 * 299.99419 * 1 2 3 34 34 H 0.96998 * 119.99875 * 264.99852 * 4 2 1 35 35 H 0.97005 * 120.00266 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.71862 * 271.93756 * 15 13 2 37 37 H 1.09002 * 110.71868 * 35.20539 * 15 13 2 38 38 H 1.09003 * 109.89953 * 218.42343 * 16 15 13 39 39 H 1.08996 * 109.97374 * 97.33819 * 16 15 13 40 40 H 1.07999 * 118.97776 * 180.26323 * 22 21 20 41 41 H 1.07996 * 120.57637 * 179.71421 * 23 22 21 42 42 H 1.07997 * 120.27185 * 0.04416 * 25 24 23 43 43 H 1.08003 * 119.49469 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.46237 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.23214 * 180.02562 * 28 27 26 46 46 H 1.09009 * 110.36778 * 265.29237 * 30 17 16 47 47 H 1.08998 * 110.46431 * 143.01582 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1544 -0.0060 -2.3744 6 1 1.8974 1.0419 -2.4229 7 6 2.6224 -0.6589 -3.5065 8 7 2.9358 -1.9358 -3.4473 9 14 2.8086 0.2751 -5.1134 10 1 4.1713 0.8601 -5.1909 11 1 2.6036 -0.6547 -6.2530 12 1 1.7989 1.3624 -5.1739 13 6 2.0401 -0.7213 1.2491 14 1 3.1297 -0.7456 1.2662 15 6 1.4782 -0.0658 2.5383 16 6 1.4927 -1.2299 3.5520 17 7 1.4921 -2.4813 2.7803 18 6 1.5241 -3.7245 3.2997 19 8 1.5205 -4.6913 2.5630 20 6 1.5633 -3.9126 4.7667 21 7 1.6846 -2.8674 5.5672 22 6 1.7200 -2.9773 6.8824 23 6 1.6440 -4.1886 7.5111 24 6 1.5190 -5.3508 6.7308 25 6 1.4358 -6.6299 7.3017 26 6 1.3162 -7.7183 6.4917 27 6 1.2760 -7.5805 5.1053 28 6 1.3539 -6.3536 4.5178 29 6 1.4775 -5.2109 5.3188 30 6 1.4514 -2.1510 1.3441 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 2.2490 -1.6317 -1.1528 35 1 3.2632 -2.3920 -4.2383 36 1 2.1254 0.7452 2.8722 37 1 0.4614 0.2923 2.3771 38 1 0.6053 -1.1833 4.1833 39 1 2.3896 -1.1753 4.1689 40 1 1.8165 -2.0827 7.4798 41 1 1.6798 -4.2515 8.5886 42 1 1.4659 -6.7502 8.3746 43 1 1.2525 -8.7032 6.9303 44 1 1.1811 -8.4606 4.4865 45 1 1.3209 -6.2626 3.4422 46 1 0.4236 -2.1629 0.9810 47 1 2.0622 -2.8514 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271519621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:55 Heat of formation + Delta-G solvation = 51.873905 kcal Electronic energy + Delta-G solvation = -28874.758724 eV Core-core repulsion = 25023.240374 eV Total energy + Delta-G solvation = -3851.518350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36566 -39.70946 -37.85660 -37.62523 -35.11844 -33.23622 -32.48790 -31.42877 -30.65651 -29.84879 -28.64984 -27.69641 -25.57190 -24.21171 -23.76768 -23.49103 -22.60416 -21.65686 -19.98271 -18.77172 -18.26490 -17.57623 -17.24713 -16.89376 -16.25847 -16.06745 -15.78025 -15.05227 -14.82219 -14.63551 -14.11334 -14.00302 -13.81623 -13.71337 -13.45839 -13.29646 -13.21072 -12.82324 -12.57878 -12.39368 -12.25528 -12.02979 -11.93352 -11.66392 -11.47679 -11.05954 -10.87365 -10.82702 -10.53946 -10.43813 -10.22477 -10.19410 -10.08096 -9.79953 -9.57955 -9.46248 -9.39415 -8.88249 -8.51958 -8.27944 -6.93335 -5.72473 -3.01693 -0.17799 0.61317 1.49133 2.50731 2.90989 3.07057 3.45941 3.50881 3.52853 3.85781 3.90679 4.26057 4.39278 4.49979 4.59913 4.61510 4.76619 4.84273 4.89636 5.00328 5.03969 5.14662 5.17644 5.42635 5.49789 5.54810 5.64764 5.66213 5.75424 5.79307 5.84478 5.88534 5.92900 6.05675 6.09052 6.13856 6.21203 6.23473 6.30669 6.35281 6.39655 6.51527 6.58321 6.61906 6.74926 6.87312 7.14342 7.45319 7.61303 7.73386 8.15137 8.45612 9.56741 10.14212 10.48633 11.49994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.002458 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.446757 B =11387.451490 C =12494.653205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.185 3.815 3 H 0.052 0.948 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.084 0.916 15 C -0.136 4.136 16 C 0.117 3.883 17 N -0.590 5.590 18 C 0.579 3.421 19 O -0.530 6.530 20 C 0.133 3.867 21 N -0.452 5.452 22 C 0.071 3.929 23 C -0.135 4.135 24 C -0.031 4.031 25 C -0.122 4.122 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.088 4.088 29 C -0.072 4.072 30 C 0.106 3.894 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.175 0.825 46 H 0.081 0.919 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -5.703 26.731 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.074 3.926 3 H 0.070 0.930 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.175 4.175 16 C -0.006 4.006 17 N -0.321 5.321 18 C 0.366 3.634 19 O -0.408 6.408 20 C -0.019 4.019 21 N -0.164 5.164 22 C -0.075 4.075 23 C -0.155 4.155 24 C -0.036 4.036 25 C -0.140 4.140 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.107 4.107 29 C -0.075 4.075 30 C -0.015 4.015 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.099 0.901 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.253 -5.266 25.938 26.807 hybrid contribution 0.162 -0.663 -0.295 0.744 sum -4.091 -5.929 25.643 26.636 Atomic orbital electron populations 1.22619 0.99465 1.01012 1.00036 1.20082 0.91827 0.95333 0.85333 0.92973 1.42450 1.78146 1.10681 1.05365 1.19224 1.36434 0.93844 0.87463 0.91181 1.24743 1.02209 0.95960 0.98059 1.69662 1.50675 1.08658 1.28961 0.86215 0.77733 0.78588 0.83795 1.21801 1.21847 1.20822 1.22696 1.00666 0.93602 0.95220 0.89760 1.22935 1.02646 0.97088 0.94800 1.22136 1.02620 0.82156 0.93654 1.48406 1.69526 1.05170 1.09003 1.17367 0.77925 0.82393 0.85719 1.90614 1.51817 1.38357 1.59987 1.21371 0.97723 0.88851 0.93940 1.67564 1.10035 1.32973 1.05790 1.22243 0.97595 0.97639 0.90002 1.22127 0.99631 0.92700 1.01033 1.18196 0.98513 0.94616 0.92254 1.20908 1.02024 0.91101 0.99996 1.21088 0.97185 0.98962 0.93961 1.21143 1.00149 0.98218 0.94734 1.22244 0.94205 0.90754 1.03522 1.18690 1.01441 0.94189 0.93193 1.22584 1.02427 0.96989 0.79495 0.92751 0.93133 0.94060 0.78188 0.93511 0.90172 0.89946 0.91305 0.90405 0.82295 0.84129 0.85066 0.85544 0.85299 0.80871 0.90103 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.85 37.16 0.33 -2.64 16 2 C 0.18 3.50 2.84 -67.93 -0.19 3.31 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 N -0.72 -17.83 5.07 -53.42 -0.27 -18.10 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.10 -1.63 3.07 -88.47 -0.27 -1.90 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 15 C -0.14 -1.68 6.31 -24.87 -0.16 -1.83 16 16 C 0.12 1.46 5.42 -3.04 -0.02 1.45 16 17 N -0.59 -9.09 3.33 -171.55 -0.57 -9.66 16 18 C 0.58 9.43 7.81 -12.28 -0.10 9.33 16 19 O -0.53 -9.80 13.70 5.32 0.07 -9.72 16 20 C 0.13 1.86 6.77 -82.55 -0.56 1.30 16 21 N -0.45 -5.44 6.89 -9.81 -0.07 -5.50 16 22 C 0.07 0.64 11.06 -18.03 -0.20 0.44 16 23 C -0.13 -1.11 9.88 -39.28 -0.39 -1.50 16 24 C -0.03 -0.32 5.75 -106.82 -0.61 -0.93 16 25 C -0.12 -1.01 9.82 -39.53 -0.39 -1.40 16 26 C -0.09 -0.75 9.95 -39.89 -0.40 -1.15 16 27 C -0.12 -1.23 9.95 -39.87 -0.40 -1.63 16 28 C -0.09 -1.13 9.23 -39.60 -0.37 -1.49 16 29 C -0.07 -0.94 5.76 -106.60 -0.61 -1.55 16 30 C 0.11 1.80 5.69 -2.52 -0.01 1.79 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.90 6.04 -51.93 -0.31 0.58 16 33 H 0.04 0.58 6.07 -51.93 -0.32 0.27 16 34 H 0.38 10.14 7.06 -40.82 -0.29 9.85 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.97 5.74 -51.93 -0.30 0.67 16 38 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 39 H 0.08 0.95 7.27 -51.93 -0.38 0.57 16 40 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 45 H 0.17 2.52 4.96 -52.49 -0.26 2.26 16 46 H 0.08 1.40 5.66 -51.92 -0.29 1.11 16 47 H 0.08 1.64 7.79 -51.93 -0.40 1.23 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.76 373.74 -10.39 -43.15 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.30 Total: 9.98 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.59 Total: -5.60 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.18 Total: -60.89 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -10.39 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271519621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.020 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds