Wall clock time and date at job start Tue Mar 31 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47126 * 2 1 4 4 N 1.46509 * 109.46913 * 240.00401 * 2 1 3 5 5 C 1.36938 * 119.99831 * 85.27258 * 4 2 1 6 6 H 1.08000 * 120.00225 * 359.72267 * 5 4 2 7 7 C 1.38812 * 119.99880 * 179.72806 * 5 4 2 8 8 N 1.31614 * 119.99809 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47248 * 89.99760 * 9 7 5 11 11 H 1.48496 * 109.47038 * 209.99780 * 9 7 5 12 12 H 1.48506 * 109.46974 * 329.99485 * 9 7 5 13 13 C 1.52994 * 109.47593 * 120.00419 * 2 1 3 14 14 H 1.09000 * 110.89180 * 179.29611 * 13 2 1 15 15 C 1.55157 * 111.00551 * 303.18082 * 13 2 1 16 16 C 1.54369 * 102.92459 * 153.54681 * 15 13 2 17 17 N 1.47022 * 107.28669 * 337.85953 * 16 15 13 18 18 C 1.34772 * 125.64931 * 178.87565 * 17 16 15 19 19 O 1.21546 * 120.00191 * 180.02562 * 18 17 16 20 20 C 1.47952 * 120.00187 * 0.04171 * 18 17 16 21 21 N 1.32206 * 120.15129 * 354.09582 * 20 18 17 22 22 C 1.32033 * 122.67125 * 179.74776 * 21 20 18 23 23 C 1.36686 * 122.03328 * 0.54416 * 22 21 20 24 24 C 1.40536 * 118.84654 * 359.74099 * 23 22 21 25 25 C 1.40320 * 122.22310 * 179.97438 * 24 23 22 26 26 C 1.36206 * 119.45052 * 180.02562 * 25 24 23 27 27 C 1.39379 * 121.00444 * 0.02562 * 26 25 24 28 28 C 1.36255 * 121.08066 * 359.95333 * 27 26 25 29 29 C 1.40091 * 119.54013 * 0.04497 * 28 27 26 30 30 C 1.47428 * 108.70428 * 358.90979 * 17 16 15 31 31 H 1.09002 * 109.47473 * 59.99356 * 1 2 3 32 32 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46437 * 299.99419 * 1 2 3 34 34 H 0.96998 * 119.99875 * 264.99852 * 4 2 1 35 35 H 0.97005 * 120.00266 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.71862 * 271.93756 * 15 13 2 37 37 H 1.09002 * 110.71868 * 35.20539 * 15 13 2 38 38 H 1.09003 * 109.89953 * 218.42343 * 16 15 13 39 39 H 1.08996 * 109.97374 * 97.33819 * 16 15 13 40 40 H 1.07999 * 118.97776 * 180.26323 * 22 21 20 41 41 H 1.07996 * 120.57637 * 179.71421 * 23 22 21 42 42 H 1.07997 * 120.27185 * 0.04416 * 25 24 23 43 43 H 1.08003 * 119.49469 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.46237 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.23214 * 180.02562 * 28 27 26 46 46 H 1.09009 * 110.36778 * 265.29237 * 30 17 16 47 47 H 1.08998 * 110.46431 * 143.01582 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1544 -0.0060 -2.3744 6 1 1.8974 1.0419 -2.4229 7 6 2.6224 -0.6589 -3.5065 8 7 2.9358 -1.9358 -3.4473 9 14 2.8086 0.2751 -5.1134 10 1 4.1713 0.8601 -5.1909 11 1 2.6036 -0.6547 -6.2530 12 1 1.7989 1.3624 -5.1739 13 6 2.0401 -0.7213 1.2491 14 1 3.1297 -0.7456 1.2662 15 6 1.4782 -0.0658 2.5383 16 6 1.4927 -1.2299 3.5520 17 7 1.4921 -2.4813 2.7803 18 6 1.5241 -3.7245 3.2997 19 8 1.5205 -4.6913 2.5630 20 6 1.5633 -3.9126 4.7667 21 7 1.6846 -2.8674 5.5672 22 6 1.7200 -2.9773 6.8824 23 6 1.6440 -4.1886 7.5111 24 6 1.5190 -5.3508 6.7308 25 6 1.4358 -6.6299 7.3017 26 6 1.3162 -7.7183 6.4917 27 6 1.2760 -7.5805 5.1053 28 6 1.3539 -6.3536 4.5178 29 6 1.4775 -5.2109 5.3188 30 6 1.4514 -2.1510 1.3441 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 2.2490 -1.6317 -1.1528 35 1 3.2632 -2.3920 -4.2383 36 1 2.1254 0.7452 2.8722 37 1 0.4614 0.2923 2.3771 38 1 0.6053 -1.1833 4.1833 39 1 2.3896 -1.1753 4.1689 40 1 1.8165 -2.0827 7.4798 41 1 1.6798 -4.2515 8.5886 42 1 1.4659 -6.7502 8.3746 43 1 1.2525 -8.7032 6.9303 44 1 1.1811 -8.4606 4.4865 45 1 1.3209 -6.2626 3.4422 46 1 0.4236 -2.1629 0.9810 47 1 2.0622 -2.8514 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271519621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:54 Heat of formation + Delta-G solvation = 31.947840 kcal Electronic energy + Delta-G solvation = -28875.622783 eV Core-core repulsion = 25023.240374 eV Total energy + Delta-G solvation = -3852.382409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23620 -40.84696 -39.16455 -38.38806 -36.73803 -34.39598 -33.93055 -32.24250 -32.07856 -30.71487 -30.19797 -29.08075 -26.67470 -25.91890 -24.72887 -24.50139 -23.51084 -23.02781 -21.02568 -20.24669 -19.38420 -18.93577 -18.33438 -17.90247 -17.52919 -17.04458 -16.75328 -16.57658 -16.14874 -15.56386 -15.43476 -15.17323 -15.04981 -14.75100 -14.69594 -14.60653 -14.27334 -14.03588 -13.72699 -13.54671 -13.49957 -13.16483 -13.10383 -12.82709 -12.75187 -12.51323 -12.47426 -12.23732 -12.14955 -12.11837 -11.61371 -11.44590 -11.40898 -11.19937 -11.02226 -10.90434 -10.42005 -10.15699 -9.71186 -9.06385 -8.99602 -7.91338 -5.20032 -0.99227 -0.12529 0.67564 1.47138 1.49139 1.57380 1.58971 1.77197 2.17644 2.57492 2.96531 3.06557 3.41993 3.48439 3.59623 3.67762 3.69503 3.80796 3.88911 3.92984 4.10870 4.20606 4.26955 4.32630 4.40683 4.44717 4.46728 4.51614 4.64992 4.66424 4.72825 4.83453 4.90718 4.95868 4.98435 5.05265 5.10718 5.12513 5.16914 5.26130 5.34224 5.39273 5.42560 5.53102 5.55698 5.60895 5.67990 5.88533 6.30362 6.38127 6.67396 6.99357 7.35788 8.13432 8.35005 9.32453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.002458 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.446757 B =11387.451490 C =12494.653205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 H 0.058 0.942 4 N -0.740 5.740 5 C -0.233 4.233 6 H 0.080 0.920 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.267 1.267 13 C -0.093 4.093 14 H 0.070 0.930 15 C -0.121 4.121 16 C 0.121 3.879 17 N -0.594 5.594 18 C 0.568 3.432 19 O -0.570 6.570 20 C 0.093 3.907 21 N -0.452 5.452 22 C 0.054 3.946 23 C -0.104 4.104 24 C -0.053 4.053 25 C -0.106 4.106 26 C -0.101 4.101 27 C -0.114 4.114 28 C -0.135 4.135 29 C -0.087 4.087 30 C 0.113 3.887 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.198 0.802 41 H 0.188 0.812 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.074 0.926 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -4.287 31.458 32.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.076 0.924 4 N -0.380 5.380 5 C -0.365 4.365 6 H 0.098 0.902 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.192 1.192 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.159 4.159 16 C 0.000 4.000 17 N -0.325 5.325 18 C 0.357 3.643 19 O -0.451 6.451 20 C -0.057 4.057 21 N -0.164 5.164 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.058 4.058 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.154 4.154 29 C -0.090 4.090 30 C -0.010 4.010 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.214 0.786 41 H 0.205 0.795 42 H 0.191 0.809 43 H 0.180 0.820 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.092 0.908 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.924 -3.787 30.702 31.324 hybrid contribution 0.343 -1.163 -1.536 1.957 sum -4.581 -4.951 29.166 29.935 Atomic orbital electron populations 1.22466 0.97678 1.00694 1.01212 1.20335 0.92892 0.95232 0.84406 0.92378 1.42723 1.78440 1.10243 1.06607 1.19665 1.34185 0.94257 0.88347 0.90180 1.25582 1.03335 0.96847 1.01630 1.69847 1.52847 1.10444 1.29378 0.85149 0.77898 0.77398 0.79400 1.21511 1.22723 1.19168 1.22492 0.99765 0.93020 0.96068 0.91195 1.22944 1.03643 0.97362 0.91915 1.22268 1.03597 0.80632 0.93510 1.48504 1.69517 1.06152 1.08317 1.17993 0.77059 0.81997 0.87236 1.90600 1.53448 1.39591 1.61449 1.20905 1.02232 0.90142 0.92424 1.67456 1.09205 1.32435 1.07310 1.22926 0.97637 0.99710 0.88976 1.22671 0.95356 0.91262 1.03058 1.18595 0.99365 0.96770 0.91080 1.21423 0.99094 0.89814 1.01993 1.21463 0.96825 1.00937 0.92755 1.21421 0.97962 0.97406 0.96407 1.22023 0.98448 0.92591 1.02336 1.18862 1.01628 0.93566 0.94912 1.22322 1.01133 0.96872 0.80644 0.94401 0.94244 0.89954 0.79885 0.94299 0.87423 0.88584 0.89882 0.89744 0.78551 0.79470 0.80906 0.81998 0.84052 0.84217 0.90833 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 8.85 71.98 0.64 -4.85 16 2 C 0.18 6.85 2.84 44.99 0.13 6.98 16 3 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 4 N -0.74 -37.81 5.07 -322.93 -1.64 -39.45 16 5 C -0.23 -13.02 9.93 84.03 0.83 -12.18 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 8 N -0.97 -62.07 13.06 21.65 0.28 -61.78 16 9 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C -0.09 -3.05 3.07 -9.40 -0.03 -3.08 16 14 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 15 C -0.12 -2.71 6.31 31.80 0.20 -2.51 16 16 C 0.12 2.91 5.42 86.74 0.47 3.38 16 17 N -0.59 -19.41 3.33 -814.96 -2.71 -22.12 16 18 C 0.57 20.30 7.81 86.82 0.68 20.98 16 19 O -0.57 -24.05 13.70 -3.86 -0.05 -24.10 16 20 C 0.09 2.70 6.77 42.43 0.29 2.99 16 21 N -0.45 -10.35 6.89 -184.95 -1.27 -11.63 16 22 C 0.05 0.79 11.06 84.30 0.93 1.72 16 23 C -0.10 -1.25 9.88 22.47 0.22 -1.03 16 24 C -0.05 -0.96 5.75 -21.29 -0.12 -1.09 16 25 C -0.11 -1.32 9.82 22.30 0.22 -1.10 16 26 C -0.10 -1.36 9.95 22.07 0.22 -1.14 16 27 C -0.11 -2.27 9.95 22.08 0.22 -2.05 16 28 C -0.13 -3.77 9.23 22.26 0.21 -3.56 16 29 C -0.09 -2.32 5.76 -21.14 -0.12 -2.44 16 30 C 0.11 4.13 5.69 86.86 0.49 4.62 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.42 6.04 -2.38 -0.01 1.41 16 33 H 0.08 2.12 6.07 -2.38 -0.01 2.10 16 34 H 0.37 20.85 7.06 -92.71 -0.65 20.20 16 35 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 1.92 5.74 -2.39 -0.01 1.91 16 38 H 0.08 1.79 7.71 -2.39 -0.02 1.77 16 39 H 0.08 1.94 7.27 -2.39 -0.02 1.92 16 40 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 43 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.14 4.80 4.96 -3.01 -0.01 4.79 16 46 H 0.07 2.76 5.66 -2.38 -0.01 2.75 16 47 H 0.04 1.92 7.79 -2.39 -0.02 1.90 16 Total: -1.00 -78.94 373.74 2.93 -76.01 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.35 Total: 32.49 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.94 Total: 1.28 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -5.34 Total: -134.98 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -78.94 2.93 -76.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271519621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.959 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds