Wall clock time and date at job start Tue Mar 31 2020 23:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47048 * 2 1 4 4 N 1.46497 * 109.47043 * 120.00198 * 2 1 3 5 5 C 1.36931 * 119.99936 * 274.72558 * 4 2 1 6 6 H 1.07999 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00196 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00172 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47409 * 89.99432 * 9 7 5 11 11 H 1.48501 * 109.47015 * 209.99654 * 9 7 5 12 12 H 1.48500 * 109.47235 * 329.99213 * 9 7 5 13 13 C 1.53004 * 109.47125 * 240.00001 * 2 1 3 14 14 H 1.09004 * 110.88574 * 299.30096 * 13 2 1 15 15 C 1.55153 * 111.00568 * 63.18139 * 13 2 1 16 16 C 1.54317 * 102.94616 * 153.57339 * 15 13 2 17 17 N 1.47017 * 107.26992 * 337.80985 * 16 15 13 18 18 C 1.34779 * 125.64810 * 178.97058 * 17 16 15 19 19 O 1.21546 * 120.00061 * 174.67242 * 18 17 16 20 20 C 1.47889 * 120.00248 * 354.67486 * 18 17 16 21 21 C 1.40594 * 119.73362 * 188.08639 * 20 18 17 22 22 C 1.35846 * 120.95467 * 179.97438 * 21 20 18 23 23 C 1.40493 * 119.87775 * 0.02562 * 22 21 20 24 24 C 1.40486 * 121.83529 * 180.02562 * 23 22 21 25 25 N 1.31215 * 119.93743 * 179.97438 * 24 23 22 26 26 C 1.32549 * 122.80470 * 0.02562 * 25 24 23 27 27 C 1.36222 * 121.84853 * 359.97438 * 26 25 24 28 28 C 1.40766 * 118.67563 * 0.02562 * 27 26 25 29 29 C 1.38537 * 119.72526 * 7.82277 * 20 18 17 30 30 C 1.47467 * 108.72306 * 358.97186 * 17 16 15 31 31 H 1.09003 * 109.46633 * 60.00331 * 1 2 3 32 32 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46824 * 300.00169 * 1 2 3 34 34 H 0.97001 * 119.99945 * 94.99963 * 4 2 1 35 35 H 0.96994 * 120.00633 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.72196 * 271.94186 * 15 13 2 37 37 H 1.09007 * 110.71800 * 35.03163 * 15 13 2 38 38 H 1.09007 * 109.88109 * 97.22383 * 16 15 13 39 39 H 1.08993 * 109.88690 * 218.23395 * 16 15 13 40 40 H 1.08000 * 119.52178 * 359.97438 * 21 20 18 41 41 H 1.08003 * 120.06045 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.03419 * 359.95769 * 24 23 22 43 43 H 1.08000 * 119.07943 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.66297 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.36685 * 359.97438 * 29 20 18 46 46 H 1.08997 * 110.34938 * 265.25211 * 30 17 16 47 47 H 1.09001 * 110.40647 * 142.91889 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1544 -0.0062 2.3743 6 1 1.9022 1.0428 2.4216 7 6 2.6176 -0.6604 3.5076 8 7 2.9255 -1.9388 3.4499 9 14 2.8026 0.2731 5.1149 10 1 1.5363 0.1871 5.8859 11 1 3.9071 -0.3226 5.9090 12 1 3.1116 1.6969 4.8278 13 6 2.0400 -0.7213 -1.2493 14 1 1.6997 -1.7567 -1.2664 15 6 1.6093 0.0271 -2.5383 16 6 2.7010 -0.3746 -3.5524 17 7 3.8815 -0.7903 -2.7811 18 6 5.0434 -1.2332 -3.3010 19 8 5.9889 -1.4589 -2.5712 20 6 5.1682 -1.4444 -4.7594 21 6 6.3181 -2.0651 -5.2782 22 6 6.4583 -2.2718 -6.6135 23 6 5.4444 -1.8620 -7.4954 24 6 5.5462 -2.0559 -8.8831 25 7 4.5764 -1.6589 -9.6727 26 6 3.4783 -1.0696 -9.2211 27 6 3.2823 -0.8355 -7.8935 28 6 4.2794 -1.2334 -6.9830 29 6 4.1485 -1.0340 -5.6026 30 6 3.5842 -0.6427 -1.3442 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 1.1525 35 1 3.2488 -2.3961 4.2418 36 1 0.6290 -0.3127 -2.8722 37 1 1.6076 1.1050 -2.3761 38 1 2.3491 -1.2032 -4.1671 39 1 2.9500 0.4768 -4.1857 40 1 7.1012 -2.3820 -4.6054 41 1 7.3476 -2.7504 -6.9964 42 1 6.4221 -2.5310 -9.2997 43 1 2.7173 -0.7673 -9.9253 44 1 2.3803 -0.3534 -7.5466 45 1 3.2644 -0.5617 -5.2006 46 1 3.9380 0.3222 -0.9811 47 1 4.0409 -1.4533 -0.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271539940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:13 Heat of formation + Delta-G solvation = 33.974858 kcal Electronic energy + Delta-G solvation = -28531.491195 eV Core-core repulsion = 24679.196684 eV Total energy + Delta-G solvation = -3852.294511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.11865 -41.09189 -39.24074 -37.95710 -36.91991 -34.54104 -33.94754 -32.66585 -31.85116 -30.94870 -30.06424 -29.39509 -26.44793 -25.95335 -24.87048 -24.16883 -23.53675 -22.63457 -21.14620 -21.09099 -19.36058 -18.95842 -18.38025 -18.00251 -17.40312 -16.88660 -16.63759 -16.58845 -15.89553 -15.69593 -15.47741 -15.23085 -15.10609 -14.71838 -14.65115 -14.58250 -14.21647 -14.15779 -13.81148 -13.64330 -13.41939 -13.37748 -13.12886 -13.02115 -12.82741 -12.61216 -12.37153 -12.23095 -12.03834 -11.92463 -11.65612 -11.51230 -11.30207 -11.22882 -11.17363 -10.93096 -10.47792 -10.22609 -9.77656 -9.10734 -8.98448 -7.92638 -5.19860 -0.83829 -0.33418 0.82251 1.41534 1.45714 1.47290 1.55148 1.78706 2.26831 2.56381 3.06232 3.20743 3.40423 3.45242 3.52484 3.55099 3.71856 3.77600 3.83171 3.85858 4.04117 4.05716 4.18142 4.20778 4.33275 4.34675 4.49850 4.56929 4.61222 4.62974 4.68742 4.74781 4.84183 4.86647 4.92555 4.94537 5.05893 5.08884 5.12192 5.18958 5.21191 5.27085 5.33838 5.42615 5.54260 5.60562 5.67265 5.73837 6.29827 6.37422 6.94165 6.99377 7.35586 8.14103 8.34245 9.31066 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002305 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.238652 B =12144.886604 C =13161.635899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.047 0.953 4 N -0.739 5.739 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.269 1.269 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.114 4.114 16 C 0.079 3.921 17 N -0.609 5.609 18 C 0.556 3.444 19 O -0.587 6.587 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.081 4.081 23 C -0.111 4.111 24 C 0.140 3.860 25 N -0.507 5.507 26 C 0.062 3.938 27 C -0.140 4.140 28 C -0.049 4.049 29 C -0.096 4.096 30 C 0.124 3.876 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.195 0.805 46 H 0.056 0.944 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 3.529 -30.062 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.214 1.214 11 H -0.228 1.228 12 H -0.194 1.194 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.041 4.041 17 N -0.340 5.340 18 C 0.347 3.653 19 O -0.469 6.469 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.031 4.031 25 N -0.215 5.215 26 C -0.080 4.080 27 C -0.159 4.159 28 C -0.054 4.054 29 C -0.113 4.113 30 C 0.001 3.999 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.186 0.814 42 H 0.207 0.793 43 H 0.196 0.804 44 H 0.192 0.808 45 H 0.211 0.789 46 H 0.074 0.926 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.812 3.504 -30.520 30.774 hybrid contribution 0.729 -0.243 2.792 2.896 sum -1.083 3.261 -27.728 27.940 Atomic orbital electron populations 1.22273 0.96743 1.00976 1.01234 1.20441 0.93332 0.94739 0.84500 0.93509 1.42671 1.78453 1.10186 1.06538 1.19592 1.34175 0.94015 0.88333 0.90508 1.25516 1.03462 0.96846 1.01450 1.69815 1.53102 1.10210 1.29192 0.85223 0.76752 0.78096 0.80246 1.21396 1.22844 1.19423 1.22502 0.91865 1.00781 0.96134 0.90473 1.22815 0.99181 1.01752 0.91409 1.22960 0.84563 1.01282 0.95312 1.48541 1.13796 1.63360 1.08336 1.18579 0.81309 0.76787 0.88644 1.90775 1.39170 1.54188 1.62767 1.19880 0.97660 1.03712 0.91149 1.20971 0.96550 0.97373 0.96540 1.21154 0.99109 0.98309 0.91432 1.19452 0.95538 1.00010 0.96287 1.23660 0.97448 0.94042 0.87914 1.67446 1.02259 1.10504 1.41274 1.22689 0.95040 0.95353 0.94964 1.22307 0.99838 1.00133 0.93632 1.18439 0.94934 0.98033 0.94022 1.23200 0.99654 0.96635 0.91817 1.22057 0.97043 1.00353 0.80428 0.89713 0.94000 0.94885 0.79926 0.94346 0.86286 0.88779 0.87953 0.87443 0.85588 0.81396 0.79326 0.80436 0.80838 0.78931 0.92553 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.31 71.98 0.67 -3.91 16 2 C 0.18 6.26 2.40 44.99 0.11 6.37 16 3 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 4 N -0.74 -36.06 4.90 -322.94 -1.58 -37.64 16 5 C -0.23 -12.55 9.93 84.03 0.83 -11.71 16 6 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 8 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 C -0.09 -2.61 2.63 -9.40 -0.02 -2.64 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.11 -1.80 5.44 31.78 0.17 -1.63 16 16 C 0.08 1.22 4.87 86.73 0.42 1.65 16 17 N -0.61 -16.86 3.33 -833.64 -2.77 -19.64 16 18 C 0.56 17.80 7.80 86.80 0.68 18.47 16 19 O -0.59 -24.78 16.64 -3.86 -0.06 -24.85 16 20 C -0.12 -2.87 5.87 -20.08 -0.12 -2.98 16 21 C -0.10 -2.12 9.49 22.29 0.21 -1.91 16 22 C -0.08 -1.27 9.77 22.26 0.22 -1.06 16 23 C -0.11 -1.76 5.75 -21.26 -0.12 -1.89 16 24 C 0.14 1.93 11.04 85.33 0.94 2.87 16 25 N -0.51 -8.06 10.29 -195.51 -2.01 -10.07 16 26 C 0.06 0.75 11.07 84.11 0.93 1.68 16 27 C -0.14 -1.49 9.88 22.42 0.22 -1.27 16 28 C -0.05 -0.77 5.74 -21.29 -0.12 -0.89 16 29 C -0.10 -1.59 8.39 22.79 0.19 -1.40 16 30 C 0.12 4.26 6.14 86.85 0.53 4.80 16 31 H 0.08 1.76 7.38 -2.39 -0.02 1.75 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.37 19.92 7.80 -92.71 -0.72 19.20 16 35 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.12 1.19 8.12 -2.39 -0.02 1.17 16 37 H 0.09 1.34 8.04 -2.38 -0.02 1.32 16 38 H 0.10 1.14 6.65 -2.38 -0.02 1.12 16 39 H 0.11 1.08 6.81 -2.39 -0.02 1.06 16 40 H 0.13 3.07 7.63 -2.91 -0.02 3.05 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.19 2.10 2.71 -10.03 -0.03 2.08 16 46 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 47 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -80.87 382.22 2.35 -78.52 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.26 Total: 24.93 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.21 Total: 0.31 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.08 Total: -127.90 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.87 2.35 -78.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.498 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds