Wall clock time and date at job start Tue Mar 31 2020 23:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46815 * 2 1 4 4 N 1.46499 * 109.47034 * 240.00136 * 2 1 3 5 5 C 1.36939 * 119.99840 * 84.99651 * 4 2 1 6 6 H 1.08001 * 120.00175 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99684 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99873 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47512 * 59.99704 * 9 7 5 11 11 H 1.48500 * 109.47143 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46955 * 299.99760 * 9 7 5 13 13 C 1.52996 * 109.47292 * 119.99762 * 2 1 3 14 14 H 1.09001 * 110.88770 * 60.96045 * 13 2 1 15 15 C 1.55153 * 111.00334 * 184.84437 * 13 2 1 16 16 C 1.54323 * 102.94335 * 153.58035 * 15 13 2 17 17 N 1.47026 * 107.27023 * 337.80192 * 16 15 13 18 18 C 1.34776 * 125.64657 * 178.89653 * 17 16 15 19 19 O 1.21551 * 119.99774 * 185.87460 * 18 17 16 20 20 C 1.47887 * 119.99999 * 5.87099 * 18 17 16 21 21 C 1.40599 * 119.72633 * 172.78730 * 20 18 17 22 22 C 1.35853 * 120.95325 * 180.02562 * 21 20 18 23 23 C 1.40498 * 119.87647 * 359.97438 * 22 21 20 24 24 C 1.40484 * 121.83572 * 180.02562 * 23 22 21 25 25 N 1.31211 * 119.93635 * 179.97438 * 24 23 22 26 26 C 1.32553 * 122.80494 * 359.97438 * 25 24 23 27 27 C 1.36225 * 121.84878 * 0.02562 * 26 25 24 28 28 C 1.40757 * 118.67321 * 359.97438 * 27 26 25 29 29 C 1.38524 * 119.73311 * 352.51511 * 20 18 17 30 30 C 1.47417 * 108.70170 * 358.94575 * 17 16 15 31 31 H 1.09004 * 109.46649 * 295.04864 * 1 2 3 32 32 H 1.08996 * 109.46784 * 175.05198 * 1 2 3 33 33 H 1.08999 * 109.47201 * 55.04843 * 1 2 3 34 34 H 0.96993 * 119.99890 * 264.99557 * 4 2 1 35 35 H 0.96995 * 120.00230 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71702 * 271.93784 * 15 13 2 37 37 H 1.08996 * 110.72386 * 35.21493 * 15 13 2 38 38 H 1.08997 * 109.88514 * 97.22415 * 16 15 13 39 39 H 1.09008 * 109.88343 * 218.23246 * 16 15 13 40 40 H 1.07999 * 119.52589 * 359.97182 * 21 20 18 41 41 H 1.07993 * 120.06191 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.02845 * 359.94791 * 24 23 22 43 43 H 1.08004 * 119.07339 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.65919 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.36585 * 0.02562 * 29 20 18 46 46 H 1.09004 * 110.36810 * 265.28729 * 30 17 16 47 47 H 1.09000 * 110.36762 * 142.96643 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4244 7 6 2.6112 -0.6619 -3.5093 8 7 2.9243 -1.9389 -3.4502 9 14 2.7902 0.2701 -5.1182 10 1 3.7462 1.3919 -4.9368 11 1 3.2979 -0.6486 -6.1687 12 1 1.4681 0.8079 -5.5284 13 6 2.0401 -0.7212 1.2492 14 1 1.7036 -1.7578 1.2641 15 6 3.5862 -0.6368 1.3478 16 6 3.8430 -0.7582 2.8646 17 7 2.6044 -0.3611 3.5502 18 6 2.4137 -0.3511 4.8843 19 8 1.3134 -0.1061 5.3391 20 6 3.5430 -0.6384 5.7949 21 6 3.3783 -0.4784 7.1820 22 6 4.3990 -0.7347 8.0411 23 6 5.6402 -1.1668 7.5442 24 6 6.7231 -1.4440 8.3950 25 7 7.8658 -1.8460 7.8908 26 6 8.0587 -2.0094 6.5896 27 6 7.0731 -1.7676 5.6808 28 6 5.8177 -1.3329 6.1457 29 6 4.7528 -1.0684 5.2747 30 6 1.6054 0.0230 2.5365 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 -1.0238 -0.0886 33 1 -0.3633 0.5887 -0.8423 34 1 2.2491 -1.6317 -1.1526 35 1 3.2476 -2.3962 -4.2422 36 1 4.0525 -1.4627 0.8105 37 1 3.9450 0.3211 0.9713 38 1 4.0925 -1.7887 3.1171 39 1 4.6592 -0.0971 3.1565 40 1 2.4268 -0.1461 7.5701 41 1 4.2565 -0.6073 9.1039 42 1 6.6153 -1.3259 9.4631 43 1 9.0245 -2.3435 6.2401 44 1 7.2515 -1.9067 4.6248 45 1 4.8750 -1.1942 4.2090 46 1 1.6232 1.1010 2.3758 47 1 0.6104 -0.2992 2.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271539941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:18 Heat of formation + Delta-G solvation = 54.969036 kcal Electronic energy + Delta-G solvation = -28469.040313 eV Core-core repulsion = 24617.656177 eV Total energy + Delta-G solvation = -3851.384135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36378 -40.19057 -38.12069 -37.14379 -35.43023 -33.51206 -32.59057 -31.67810 -30.61379 -30.21907 -29.17519 -27.52824 -25.76248 -24.43731 -23.93535 -23.26507 -22.55350 -21.46670 -20.26328 -19.72012 -18.41343 -17.67788 -17.24731 -17.13413 -16.35964 -16.09863 -15.62554 -15.16569 -15.02985 -14.56288 -14.30690 -14.10409 -14.00012 -13.87658 -13.51902 -13.40906 -13.20316 -13.03092 -12.72806 -12.60175 -12.40131 -12.23817 -12.14592 -11.83997 -11.37580 -11.11302 -10.91261 -10.80291 -10.66124 -10.60563 -10.37612 -10.28029 -10.15958 -9.91261 -9.82597 -9.68287 -9.45738 -8.95957 -8.75856 -8.47980 -7.02016 -5.81754 -3.10415 -0.16033 0.35797 1.47394 2.23197 2.77787 3.09890 3.40147 3.45451 3.45731 3.72338 3.99966 4.07565 4.16388 4.39958 4.43308 4.52282 4.57717 4.64837 4.76435 4.82209 4.92402 4.95845 5.13927 5.19293 5.26260 5.29549 5.31784 5.48240 5.53480 5.58081 5.70851 5.79165 5.80744 5.87709 5.88795 5.92583 5.96559 6.13438 6.13989 6.22167 6.28245 6.36473 6.39760 6.50676 6.57809 6.81482 7.04476 7.34438 7.58492 7.65212 7.96082 8.36731 9.48280 10.04672 10.39670 11.40740 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002382 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.743676 B =11752.880949 C =13240.111175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.118 4.118 16 C 0.083 3.917 17 N -0.607 5.607 18 C 0.568 3.432 19 O -0.537 6.537 20 C -0.102 4.102 21 C -0.071 4.071 22 C -0.096 4.096 23 C -0.099 4.099 24 C 0.141 3.859 25 N -0.484 5.484 26 C 0.071 3.929 27 C -0.144 4.144 28 C -0.034 4.034 29 C -0.110 4.110 30 C 0.113 3.887 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.143 0.857 45 H 0.175 0.825 46 H 0.073 0.927 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 0.994 22.719 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.156 4.156 16 C -0.039 4.039 17 N -0.340 5.340 18 C 0.357 3.643 19 O -0.415 6.415 20 C -0.107 4.107 21 C -0.090 4.090 22 C -0.116 4.116 23 C -0.101 4.101 24 C -0.030 4.030 25 N -0.192 5.192 26 C -0.072 4.072 27 C -0.164 4.164 28 C -0.039 4.039 29 C -0.127 4.127 30 C -0.009 4.009 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.173 0.827 44 H 0.160 0.840 45 H 0.191 0.809 46 H 0.091 0.909 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.981 1.030 23.307 24.352 hybrid contribution -0.506 0.277 -1.568 1.670 sum 6.476 1.307 21.740 22.721 Atomic orbital electron populations 1.22507 0.99187 1.01337 0.99812 1.20127 0.91846 0.95137 0.85368 0.93237 1.42354 1.78193 1.10634 1.05104 1.19166 1.36564 0.93829 0.87294 0.91288 1.24713 1.02196 0.95943 0.97981 1.69637 1.50885 1.08630 1.29007 0.86301 0.77790 0.78610 0.83673 1.21303 1.21742 1.21320 1.22676 0.94982 1.00488 0.94090 0.89922 1.22667 0.96696 1.04472 0.91794 1.22682 0.87106 0.99569 0.94513 1.48428 1.15537 1.65251 1.04798 1.17922 0.87948 0.77703 0.80739 1.90778 1.25200 1.49867 1.75654 1.20020 0.93917 1.02358 0.94369 1.20934 0.99838 0.96844 0.91354 1.20899 0.91444 0.98912 1.00310 1.19211 0.96179 1.00909 0.93794 1.23248 0.87126 0.92762 0.99899 1.67390 1.24383 1.11783 1.15657 1.22220 0.99476 0.97366 0.88096 1.22029 0.92784 0.99829 1.01741 1.18179 0.94546 0.98407 0.92768 1.23139 0.91235 0.95627 1.02720 1.22399 0.92360 0.99602 0.86546 0.94330 0.93275 0.92847 0.78285 0.93475 0.89125 0.89912 0.90480 0.90518 0.84218 0.84303 0.81847 0.82748 0.83953 0.80880 0.90910 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.38 37.16 0.35 -2.52 16 2 C 0.19 3.32 2.40 -67.93 -0.16 3.15 16 3 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -16.54 4.90 -53.42 -0.26 -16.80 16 5 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 9 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.10 -1.48 2.64 -88.47 -0.23 -1.72 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.53 6.21 -24.90 -0.15 -1.69 16 16 C 0.08 0.87 4.86 -3.06 -0.01 0.86 16 17 N -0.61 -7.75 3.33 -177.83 -0.59 -8.34 16 18 C 0.57 7.85 7.80 -12.31 -0.10 7.75 16 19 O -0.54 -9.03 16.56 5.32 0.09 -8.94 16 20 C -0.10 -1.17 5.87 -104.95 -0.62 -1.78 16 21 C -0.07 -0.71 9.49 -39.55 -0.38 -1.09 16 22 C -0.10 -0.77 9.77 -39.59 -0.39 -1.16 16 23 C -0.10 -0.89 5.75 -106.78 -0.61 -1.51 16 24 C 0.14 1.17 11.04 -16.97 -0.19 0.98 16 25 N -0.48 -4.70 10.29 -13.15 -0.14 -4.84 16 26 C 0.07 0.60 11.07 -17.96 -0.20 0.40 16 27 C -0.14 -1.18 9.88 -39.35 -0.39 -1.57 16 28 C -0.03 -0.32 5.74 -106.83 -0.61 -0.94 16 29 C -0.11 -1.07 8.40 -38.78 -0.33 -1.40 16 30 C 0.11 1.53 5.41 -2.53 -0.01 1.51 16 31 H 0.04 0.55 7.09 -51.93 -0.37 0.19 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.38 9.38 7.80 -40.82 -0.32 9.06 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 38 H 0.08 0.70 6.72 -51.93 -0.35 0.35 16 39 H 0.08 0.68 6.75 -51.92 -0.35 0.33 16 40 H 0.14 1.36 7.62 -52.49 -0.40 0.96 16 41 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.17 1.45 2.69 -60.50 -0.16 1.29 16 46 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 47 H 0.08 1.15 7.77 -51.93 -0.40 0.74 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -32.30 381.69 -10.26 -42.56 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.53 Total: 7.70 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -4.28 Total: -7.50 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.26 Total: -56.21 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.30 -10.26 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.526 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds