Wall clock time and date at job start Tue Mar 31 2020 23:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46815 * 2 1 4 4 N 1.46499 * 109.47034 * 240.00136 * 2 1 3 5 5 C 1.36939 * 119.99840 * 84.99651 * 4 2 1 6 6 H 1.08001 * 120.00175 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99684 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99873 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47512 * 59.99704 * 9 7 5 11 11 H 1.48500 * 109.47143 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46955 * 299.99760 * 9 7 5 13 13 C 1.52996 * 109.47292 * 119.99762 * 2 1 3 14 14 H 1.09001 * 110.88770 * 60.96045 * 13 2 1 15 15 C 1.55153 * 111.00334 * 184.84437 * 13 2 1 16 16 C 1.54323 * 102.94335 * 153.58035 * 15 13 2 17 17 N 1.47026 * 107.27023 * 337.80192 * 16 15 13 18 18 C 1.34776 * 125.64657 * 178.89653 * 17 16 15 19 19 O 1.21551 * 119.99774 * 185.87460 * 18 17 16 20 20 C 1.47887 * 119.99999 * 5.87099 * 18 17 16 21 21 C 1.40599 * 119.72633 * 172.78730 * 20 18 17 22 22 C 1.35853 * 120.95325 * 180.02562 * 21 20 18 23 23 C 1.40498 * 119.87647 * 359.97438 * 22 21 20 24 24 C 1.40484 * 121.83572 * 180.02562 * 23 22 21 25 25 N 1.31211 * 119.93635 * 179.97438 * 24 23 22 26 26 C 1.32553 * 122.80494 * 359.97438 * 25 24 23 27 27 C 1.36225 * 121.84878 * 0.02562 * 26 25 24 28 28 C 1.40757 * 118.67321 * 359.97438 * 27 26 25 29 29 C 1.38524 * 119.73311 * 352.51511 * 20 18 17 30 30 C 1.47417 * 108.70170 * 358.94575 * 17 16 15 31 31 H 1.09004 * 109.46649 * 295.04864 * 1 2 3 32 32 H 1.08996 * 109.46784 * 175.05198 * 1 2 3 33 33 H 1.08999 * 109.47201 * 55.04843 * 1 2 3 34 34 H 0.96993 * 119.99890 * 264.99557 * 4 2 1 35 35 H 0.96995 * 120.00230 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71702 * 271.93784 * 15 13 2 37 37 H 1.08996 * 110.72386 * 35.21493 * 15 13 2 38 38 H 1.08997 * 109.88514 * 97.22415 * 16 15 13 39 39 H 1.09008 * 109.88343 * 218.23246 * 16 15 13 40 40 H 1.07999 * 119.52589 * 359.97182 * 21 20 18 41 41 H 1.07993 * 120.06191 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.02845 * 359.94791 * 24 23 22 43 43 H 1.08004 * 119.07339 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.65919 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.36585 * 0.02562 * 29 20 18 46 46 H 1.09004 * 110.36810 * 265.28729 * 30 17 16 47 47 H 1.09000 * 110.36762 * 142.96643 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4244 7 6 2.6112 -0.6619 -3.5093 8 7 2.9243 -1.9389 -3.4502 9 14 2.7902 0.2701 -5.1182 10 1 3.7462 1.3919 -4.9368 11 1 3.2979 -0.6486 -6.1687 12 1 1.4681 0.8079 -5.5284 13 6 2.0401 -0.7212 1.2492 14 1 1.7036 -1.7578 1.2641 15 6 3.5862 -0.6368 1.3478 16 6 3.8430 -0.7582 2.8646 17 7 2.6044 -0.3611 3.5502 18 6 2.4137 -0.3511 4.8843 19 8 1.3134 -0.1061 5.3391 20 6 3.5430 -0.6384 5.7949 21 6 3.3783 -0.4784 7.1820 22 6 4.3990 -0.7347 8.0411 23 6 5.6402 -1.1668 7.5442 24 6 6.7231 -1.4440 8.3950 25 7 7.8658 -1.8460 7.8908 26 6 8.0587 -2.0094 6.5896 27 6 7.0731 -1.7676 5.6808 28 6 5.8177 -1.3329 6.1457 29 6 4.7528 -1.0684 5.2747 30 6 1.6054 0.0230 2.5365 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 -1.0238 -0.0886 33 1 -0.3633 0.5887 -0.8423 34 1 2.2491 -1.6317 -1.1526 35 1 3.2476 -2.3962 -4.2422 36 1 4.0525 -1.4627 0.8105 37 1 3.9450 0.3211 0.9713 38 1 4.0925 -1.7887 3.1171 39 1 4.6592 -0.0971 3.1565 40 1 2.4268 -0.1461 7.5701 41 1 4.2565 -0.6073 9.1039 42 1 6.6153 -1.3259 9.4631 43 1 9.0245 -2.3435 6.2401 44 1 7.2515 -1.9067 4.6248 45 1 4.8750 -1.1942 4.2090 46 1 1.6232 1.1010 2.3758 47 1 0.6104 -0.2992 2.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271539941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:17 Heat of formation + Delta-G solvation = 36.079263 kcal Electronic energy + Delta-G solvation = -28469.859435 eV Core-core repulsion = 24617.656177 eV Total energy + Delta-G solvation = -3852.203257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.12282 -41.10703 -39.23413 -37.95044 -36.91354 -34.52349 -33.92371 -32.66058 -31.73540 -31.10366 -30.50954 -28.78751 -26.76919 -25.85145 -24.85483 -24.18471 -23.54567 -22.57119 -21.23666 -21.05874 -19.32194 -18.96237 -18.41957 -17.99566 -17.44710 -16.91179 -16.59557 -16.51257 -15.88000 -15.78074 -15.44348 -15.18100 -14.95924 -14.81617 -14.70271 -14.54253 -14.24912 -14.01229 -13.91698 -13.65292 -13.53962 -13.37060 -13.15596 -13.01755 -12.78644 -12.74337 -12.33891 -12.22887 -12.05207 -11.93015 -11.57770 -11.54695 -11.29503 -11.24173 -11.17172 -10.88628 -10.49357 -10.21891 -9.77832 -9.11730 -8.96021 -7.89516 -5.16208 -0.84294 -0.33543 0.81273 1.41906 1.50306 1.51538 1.57345 1.77992 2.26720 2.59339 3.05435 3.18217 3.42202 3.44183 3.52514 3.57042 3.65606 3.77744 3.82429 3.84128 4.02459 4.06482 4.16666 4.24224 4.32640 4.32970 4.44176 4.57145 4.57531 4.62816 4.66885 4.70005 4.74104 4.84678 4.89976 4.96925 5.03908 5.06048 5.10765 5.18853 5.20274 5.28149 5.32418 5.38441 5.56708 5.60601 5.61333 5.73151 6.31868 6.34365 6.92571 6.97631 7.40057 8.15871 8.39520 9.33497 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002382 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.743676 B =11752.880949 C =13240.111175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.729 5.729 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.283 1.283 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.114 4.114 16 C 0.089 3.911 17 N -0.608 5.608 18 C 0.565 3.435 19 O -0.576 6.576 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.080 4.080 23 C -0.110 4.110 24 C 0.142 3.858 25 N -0.507 5.507 26 C 0.062 3.938 27 C -0.147 4.147 28 C -0.050 4.050 29 C -0.103 4.103 30 C 0.119 3.881 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.172 0.828 42 H 0.194 0.806 43 H 0.175 0.825 44 H 0.165 0.835 45 H 0.185 0.815 46 H 0.077 0.923 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 1.536 24.274 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.210 1.210 13 C -0.114 4.114 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.032 4.032 17 N -0.340 5.340 18 C 0.356 3.644 19 O -0.457 6.457 20 C -0.124 4.124 21 C -0.109 4.109 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.029 4.029 25 N -0.215 5.215 26 C -0.080 4.080 27 C -0.166 4.166 28 C -0.055 4.055 29 C -0.121 4.121 30 C -0.004 4.004 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.190 0.810 42 H 0.210 0.790 43 H 0.192 0.808 44 H 0.182 0.818 45 H 0.202 0.798 46 H 0.096 0.904 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.291 1.604 24.882 26.276 hybrid contribution -0.889 0.124 -1.947 2.144 sum 7.402 1.728 22.935 24.162 Atomic orbital electron populations 1.22388 0.98329 1.00751 1.00623 1.20290 0.92262 0.94987 0.85029 0.93294 1.42493 1.78319 1.10273 1.05870 1.19508 1.34460 0.94037 0.88311 0.90931 1.25405 1.03348 0.96771 1.00966 1.69780 1.52799 1.09987 1.29268 0.85356 0.77742 0.77435 0.80093 1.20436 1.22535 1.21002 1.22454 0.96271 0.99731 0.92955 0.90485 1.22589 0.95185 1.03822 0.93631 1.22794 0.86764 1.01364 0.92326 1.48454 1.15975 1.64916 1.04617 1.18335 0.88151 0.76930 0.80995 1.90748 1.26823 1.51863 1.76294 1.19934 0.93644 1.04261 0.94562 1.21002 1.00472 0.98185 0.91202 1.21200 0.90263 0.96804 1.01666 1.19466 0.96821 1.01007 0.93947 1.23729 0.86357 0.91615 1.01225 1.67447 1.25114 1.12536 1.16422 1.22621 1.00479 0.96977 0.87911 1.22275 0.92074 0.99286 1.02962 1.18421 0.95036 0.98795 0.93258 1.23179 0.90643 0.94976 1.03277 1.22250 0.92383 0.99623 0.86146 0.91499 0.94115 0.94432 0.79415 0.94219 0.89852 0.90537 0.88533 0.88157 0.84620 0.81037 0.78952 0.80800 0.81764 0.79827 0.90449 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 9.38 71.98 0.68 -4.74 16 2 C 0.18 6.48 2.40 44.99 0.11 6.58 16 3 H 0.05 1.75 8.07 -2.38 -0.02 1.74 16 4 N -0.73 -33.60 4.90 -322.93 -1.58 -35.18 16 5 C -0.23 -12.07 9.93 84.03 0.83 -11.23 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 8 N -0.97 -56.69 13.06 21.65 0.28 -56.41 16 9 Si 0.96 44.70 29.55 68.60 2.03 46.72 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C -0.09 -2.68 2.64 -9.40 -0.02 -2.70 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -2.84 6.21 31.78 0.20 -2.64 16 16 C 0.09 1.69 4.86 86.73 0.42 2.11 16 17 N -0.61 -14.85 3.33 -834.81 -2.78 -17.62 16 18 C 0.56 15.33 7.80 86.80 0.68 16.01 16 19 O -0.58 -19.56 16.56 -3.87 -0.06 -19.62 16 20 C -0.12 -2.60 5.87 -20.08 -0.12 -2.72 16 21 C -0.09 -1.71 9.49 22.29 0.21 -1.50 16 22 C -0.08 -1.11 9.77 22.27 0.22 -0.89 16 23 C -0.11 -1.74 5.75 -21.26 -0.12 -1.86 16 24 C 0.14 1.98 11.04 85.33 0.94 2.92 16 25 N -0.51 -8.71 10.29 -195.51 -2.01 -10.72 16 26 C 0.06 0.91 11.07 84.11 0.93 1.84 16 27 C -0.15 -2.04 9.88 22.42 0.22 -1.82 16 28 C -0.05 -0.85 5.74 -21.29 -0.12 -0.97 16 29 C -0.10 -1.82 8.40 22.79 0.19 -1.63 16 30 C 0.12 3.10 5.41 86.86 0.47 3.57 16 31 H 0.07 1.86 7.09 -2.39 -0.02 1.84 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.37 18.57 7.80 -92.71 -0.72 17.84 16 35 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 36 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 38 H 0.10 1.52 6.72 -2.39 -0.02 1.50 16 39 H 0.10 1.50 6.75 -2.38 -0.02 1.49 16 40 H 0.14 2.62 7.62 -2.91 -0.02 2.59 16 41 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 42 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 45 H 0.19 2.63 2.69 -10.44 -0.03 2.60 16 46 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 47 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 Total: -1.00 -70.15 381.69 2.31 -67.84 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.26 Total: 28.19 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.18 Total: -3.20 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.09 Total: -119.93 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.06 Total: -19.62 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.15 2.31 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.918 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds