Wall clock time and date at job start Tue Mar 31 2020 23:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 N 1.46504 * 109.47120 * 239.99751 * 2 1 3 5 5 C 1.36936 * 119.99556 * 84.99693 * 4 2 1 6 6 H 1.08000 * 120.00455 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99631 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00231 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99730 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47176 * 120.00145 * 9 7 5 12 12 H 1.48495 * 109.47052 * 239.99776 * 9 7 5 13 13 C 1.53002 * 109.47274 * 120.00159 * 2 1 3 14 14 H 1.09001 * 110.88603 * 63.87669 * 13 2 1 15 15 C 1.55162 * 111.00338 * 299.99784 * 13 2 1 16 16 C 1.54323 * 103.10326 * 206.33315 * 15 13 2 17 17 N 1.47493 * 107.03221 * 22.24311 * 16 15 13 18 18 C 1.34780 * 125.58904 * 181.00535 * 17 16 15 19 19 O 1.21548 * 119.99640 * 174.58606 * 18 17 16 20 20 C 1.47885 * 120.00291 * 354.58387 * 18 17 16 21 21 C 1.40602 * 119.72381 * 319.15097 * 20 18 17 22 22 C 1.35852 * 120.94473 * 179.74565 * 21 20 18 23 23 C 1.40490 * 119.88117 * 0.53091 * 22 21 20 24 24 C 1.40489 * 121.83490 * 179.69704 * 23 22 21 25 25 N 1.31208 * 119.93982 * 180.02562 * 24 23 22 26 26 C 1.32564 * 122.80182 * 359.97438 * 25 24 23 27 27 C 1.36218 * 121.84831 * 0.02562 * 26 25 24 28 28 C 1.40761 * 118.67568 * 359.97438 * 27 26 25 29 29 C 1.38528 * 119.73002 * 139.42771 * 20 18 17 30 30 C 1.47423 * 108.76087 * 1.02335 * 17 16 15 31 31 H 1.08997 * 109.47272 * 59.99662 * 1 2 3 32 32 H 1.08997 * 109.47522 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47268 * 299.99894 * 1 2 3 34 34 H 0.96998 * 120.00223 * 265.00260 * 4 2 1 35 35 H 0.97001 * 120.00191 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.72047 * 324.78788 * 15 13 2 37 37 H 1.08999 * 110.72007 * 87.88017 * 15 13 2 38 38 H 1.09003 * 109.88334 * 141.69318 * 16 15 13 39 39 H 1.08995 * 109.88548 * 262.86388 * 16 15 13 40 40 H 1.08000 * 119.52677 * 0.02562 * 21 20 18 41 41 H 1.08007 * 120.05732 * 180.28367 * 22 21 20 42 42 H 1.07997 * 120.03252 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.07549 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.66088 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.36404 * 359.97438 * 29 20 18 46 46 H 1.09004 * 110.36709 * 217.05425 * 30 17 16 47 47 H 1.09002 * 110.46264 * 94.77793 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1490 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4242 7 6 2.6112 -0.6621 -3.5093 8 7 2.9233 -1.9393 -3.4504 9 14 2.7902 0.2700 -5.1182 10 1 2.3773 1.6827 -4.9205 11 1 4.2070 0.2262 -5.5607 12 1 1.9290 -0.3578 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 1.7468 -1.7711 1.2388 15 6 1.5426 -0.0178 2.5397 16 6 2.6216 -0.3889 3.5786 17 7 3.8427 -0.7366 2.8279 18 6 5.0099 -1.1363 3.3705 19 8 5.9236 -1.4924 2.6523 20 6 5.1790 -1.1418 4.8397 21 6 4.6665 -0.0790 5.6043 22 6 4.8033 -0.0612 6.9558 23 6 5.4748 -1.1105 7.6052 24 6 5.6453 -1.1307 8.9996 25 7 6.2792 -2.1293 9.5674 26 6 6.7798 -3.1461 8.8798 27 6 6.6682 -3.2215 7.5243 28 6 6.0005 -2.1865 6.8429 29 6 5.8461 -2.1910 5.4505 30 6 3.5759 -0.5742 1.3872 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2467 -2.3966 -4.2424 36 1 1.4990 1.0621 2.3978 37 1 0.5690 -0.4055 2.8395 38 1 2.8148 0.4615 4.2325 39 1 2.2906 -1.2443 4.1675 40 1 4.1528 0.7327 5.1106 41 1 4.4000 0.7602 7.5296 42 1 5.2556 -0.3246 9.6034 43 1 7.2905 -3.9369 9.4092 44 1 7.0837 -4.0588 6.9831 45 1 6.2422 -3.0038 4.8599 46 1 4.0842 -1.3520 0.8172 47 1 3.8944 0.4120 1.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271539942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:22 Heat of formation + Delta-G solvation = 36.187526 kcal Electronic energy + Delta-G solvation = -28315.968073 eV Core-core repulsion = 24463.769510 eV Total energy + Delta-G solvation = -3852.198563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27472 -40.05717 -38.06829 -37.13524 -35.24941 -33.41441 -32.64137 -31.71705 -30.47718 -30.03630 -28.72982 -28.18194 -25.44448 -24.26570 -23.95633 -23.12964 -22.58774 -21.56902 -19.98971 -19.69786 -18.50712 -17.72471 -17.09830 -17.01230 -16.49752 -16.01705 -15.53419 -15.12339 -14.92580 -14.60860 -14.36198 -14.18751 -14.00063 -13.81572 -13.66050 -13.46190 -13.04301 -12.87704 -12.75568 -12.58704 -12.36440 -12.16741 -12.04142 -11.67745 -11.45257 -11.39340 -10.90381 -10.80415 -10.64606 -10.58973 -10.57401 -10.20909 -10.10018 -9.90547 -9.81155 -9.64431 -9.43713 -8.92808 -8.60796 -8.47980 -6.97406 -5.76643 -3.05808 -0.11995 0.34762 1.48133 2.28498 2.83545 3.05020 3.43306 3.48660 3.51193 3.68360 4.00337 4.12944 4.15742 4.34829 4.40267 4.54912 4.62587 4.64598 4.72475 4.75490 4.94263 4.96901 5.19003 5.26273 5.28250 5.31364 5.39851 5.53876 5.55193 5.60705 5.67519 5.83973 5.85048 5.86823 5.88797 5.93233 6.00392 6.12684 6.19958 6.25009 6.30353 6.35778 6.37241 6.50889 6.60056 6.82529 7.04396 7.48525 7.56398 7.70038 8.07872 8.41265 9.52811 10.09390 10.43638 11.45890 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.002171 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.026107 B =12895.395898 C =13631.895259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.125 4.125 16 C 0.095 3.905 17 N -0.612 5.612 18 C 0.566 3.434 19 O -0.528 6.528 20 C -0.096 4.096 21 C -0.097 4.097 22 C -0.090 4.090 23 C -0.101 4.101 24 C 0.144 3.856 25 N -0.486 5.486 26 C 0.072 3.928 27 C -0.145 4.145 28 C -0.030 4.030 29 C -0.055 4.055 30 C 0.118 3.882 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 2.315 26.770 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.164 4.164 16 C -0.027 4.027 17 N -0.345 5.345 18 C 0.354 3.646 19 O -0.404 6.404 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.103 4.103 24 C -0.028 4.028 25 N -0.194 5.194 26 C -0.071 4.071 27 C -0.164 4.164 28 C -0.036 4.036 29 C -0.073 4.073 30 C -0.003 4.003 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.104 0.896 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.834 2.079 27.150 27.292 hybrid contribution 0.015 0.091 -1.929 1.931 sum 1.849 2.170 25.222 25.382 Atomic orbital electron populations 1.22445 0.99066 1.00904 1.00006 1.20147 0.91931 0.95138 0.85335 0.93301 1.42431 1.78154 1.10719 1.05269 1.19239 1.36599 0.93830 0.87250 0.91161 1.24738 1.02147 0.95955 0.98063 1.69662 1.50811 1.08639 1.28790 0.86155 0.77327 0.78775 0.84146 1.20591 1.21888 1.21950 1.22669 0.93565 1.00820 0.95044 0.89999 1.22700 0.97610 1.01613 0.94433 1.22382 0.84951 1.00132 0.95270 1.48611 1.10942 1.65873 1.09082 1.17925 0.81797 0.77739 0.87179 1.90846 1.40168 1.47179 1.62249 1.20029 1.00201 0.96414 0.93416 1.21169 0.98393 0.97957 0.93947 1.20887 0.98087 0.97578 0.94405 1.19145 1.00071 0.95754 0.95375 1.23248 0.93205 0.95731 0.90620 1.67392 1.08843 1.01692 1.41450 1.22201 0.97370 0.96057 0.91450 1.22010 0.99550 0.98908 0.95977 1.18115 0.97416 0.94544 0.93477 1.21359 0.95352 0.97917 0.92711 1.22327 0.96148 1.02873 0.78928 0.92757 0.93512 0.94360 0.78265 0.93555 0.90248 0.89957 0.91117 0.91402 0.84416 0.84267 0.81785 0.82812 0.84087 0.83988 0.89569 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.27 37.15 0.34 -2.34 16 2 C 0.18 3.34 2.43 -67.93 -0.16 3.18 16 3 H 0.05 0.90 8.01 -51.93 -0.42 0.49 16 4 N -0.72 -17.29 4.97 -53.42 -0.27 -17.56 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 9 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 C -0.10 -1.50 2.66 -88.47 -0.23 -1.73 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.13 -1.31 5.28 -24.89 -0.13 -1.45 16 16 C 0.10 0.95 5.84 -2.81 -0.02 0.93 16 17 N -0.61 -8.46 3.34 -171.23 -0.57 -9.03 16 18 C 0.57 8.55 7.43 -12.31 -0.09 8.46 16 19 O -0.53 -10.23 17.14 5.32 0.09 -10.14 16 20 C -0.10 -1.12 5.46 -104.95 -0.57 -1.70 16 21 C -0.10 -0.85 8.33 -39.55 -0.33 -1.18 16 22 C -0.09 -0.65 9.77 -39.59 -0.39 -1.04 16 23 C -0.10 -0.88 5.75 -106.78 -0.61 -1.50 16 24 C 0.14 1.13 11.04 -16.97 -0.19 0.95 16 25 N -0.49 -4.58 10.29 -13.15 -0.14 -4.72 16 26 C 0.07 0.59 11.07 -17.96 -0.20 0.39 16 27 C -0.14 -1.21 9.88 -39.36 -0.39 -1.59 16 28 C -0.03 -0.30 5.74 -106.83 -0.61 -0.91 16 29 C -0.05 -0.60 9.42 -38.78 -0.37 -0.96 16 30 C 0.12 1.94 6.26 -2.53 -0.02 1.92 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.50 7.27 -51.93 -0.38 0.12 16 34 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.07 0.54 5.48 -51.93 -0.28 0.25 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.14 1.01 5.69 -52.49 -0.30 0.71 16 41 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.14 1.53 8.05 -52.49 -0.42 1.10 16 46 H 0.09 1.70 7.99 -51.93 -0.41 1.28 16 47 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -34.00 386.08 -10.29 -44.29 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.71 Total: 6.90 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.21 Total: -5.60 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.25 Total: -58.58 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.00 -10.29 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.478 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds