Wall clock time and date at job start Tue Mar 31 2020 22:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47471 * 2 1 4 4 N 1.46503 * 109.47563 * 239.99216 * 2 1 3 5 5 C 1.36945 * 119.99455 * 85.00232 * 4 2 1 6 6 H 1.07994 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99577 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99969 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47182 * 89.99629 * 9 7 5 11 11 H 1.48498 * 109.47304 * 210.00140 * 9 7 5 12 12 H 1.48506 * 109.47170 * 329.99699 * 9 7 5 13 13 C 1.50709 * 109.47114 * 119.99547 * 2 1 3 14 14 C 1.38238 * 119.99977 * 260.00114 * 13 2 1 15 15 C 1.38226 * 119.99913 * 179.97438 * 14 13 2 16 16 C 1.38243 * 120.00031 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99651 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.46993 * 90.00513 * 17 16 15 19 19 C 1.34782 * 119.99968 * 179.97438 * 18 17 16 20 20 O 1.21284 * 119.99341 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00088 * 179.97438 * 19 18 17 22 22 C 1.50695 * 109.47115 * 179.97438 * 21 19 18 23 23 C 1.38678 * 120.41675 * 270.25421 * 22 21 19 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 C 1.38229 * 119.99912 * 0.25371 * 16 15 14 29 29 C 1.38233 * 119.99970 * 79.98009 * 13 2 1 30 30 H 1.08999 * 109.47856 * 300.00549 * 1 2 3 31 31 H 1.09007 * 109.47130 * 60.00625 * 1 2 3 32 32 H 1.09005 * 109.47471 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00371 * 265.00083 * 4 2 1 34 34 H 0.96998 * 119.99557 * 180.02562 * 8 7 5 35 35 H 1.08000 * 119.99599 * 359.97438 * 14 13 2 36 36 H 1.07998 * 120.00007 * 179.97438 * 15 14 13 37 37 H 1.08999 * 109.47162 * 329.99870 * 17 16 15 38 38 H 1.09000 * 109.46806 * 210.00275 * 17 16 15 39 39 H 0.97000 * 120.00028 * 359.97438 * 18 17 16 40 40 H 1.09001 * 109.46626 * 59.99898 * 21 19 18 41 41 H 1.08996 * 109.46931 * 299.99770 * 21 19 18 42 42 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 43 43 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 44 44 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.00196 * 179.72723 * 28 16 15 47 47 H 1.07998 * 119.99959 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5092 8 7 2.9245 -1.9393 -3.4499 9 14 2.7893 0.2693 -5.1185 10 1 4.1515 0.8545 -5.2038 11 1 2.5785 -0.6622 -6.2556 12 1 1.7792 1.3564 -5.1754 13 6 2.0323 -0.7104 1.2306 14 6 2.4586 0.0196 2.3244 15 6 2.9189 -0.6319 3.4532 16 6 2.9533 -2.0135 3.4882 17 6 3.4557 -2.7238 4.7188 18 7 2.3360 -2.9730 5.6300 19 6 2.5489 -3.6014 6.8032 20 8 3.6674 -3.9609 7.1042 21 6 1.3972 -3.8572 7.7409 22 6 1.8993 -4.5687 8.9708 23 6 1.9413 -5.9542 9.0124 24 6 2.4059 -6.5658 10.1665 25 6 2.8138 -5.7797 11.2279 26 7 2.7650 -4.4643 11.1509 27 6 2.3290 -3.8487 10.0691 28 6 2.5324 -2.7433 2.3923 29 6 2.0663 -2.0918 1.2657 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6319 -1.1524 34 1 3.2479 -2.3966 -4.2419 35 1 2.4321 1.0989 2.2968 36 1 3.2524 -0.0617 4.3076 37 1 4.1995 -2.1031 5.2183 38 1 3.9082 -3.6728 4.4312 39 1 1.4413 -2.6858 5.3891 40 1 0.6529 -4.4773 7.2413 41 1 0.9454 -2.9080 8.0288 42 1 1.6157 -6.5428 8.1676 43 1 2.4483 -7.6427 10.2356 44 1 3.1774 -6.2484 12.1304 45 1 2.3032 -2.7693 10.0432 46 1 2.5634 -3.8226 2.4179 47 1 1.7325 -2.6621 0.4115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272692180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:56 Heat of formation + Delta-G solvation = 28.367319 kcal Electronic energy + Delta-G solvation = -27010.779946 eV Core-core repulsion = 23158.242273 eV Total energy + Delta-G solvation = -3852.537672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76430 -39.81380 -39.10501 -36.05256 -34.59424 -33.93942 -32.42405 -32.22521 -30.78267 -30.47765 -28.70770 -28.09670 -25.80847 -23.94162 -23.91492 -22.90764 -22.56198 -21.64331 -20.70393 -19.75461 -17.73215 -17.44945 -17.32943 -16.84421 -16.53665 -15.75220 -15.59513 -15.20515 -14.97729 -14.83118 -14.36417 -14.23589 -13.79487 -13.60512 -13.47412 -13.41525 -13.38290 -13.21845 -13.05953 -12.84861 -12.36700 -12.28455 -11.98975 -11.91335 -11.57820 -11.26867 -10.95711 -10.87027 -10.66838 -10.36861 -10.31482 -10.06863 -10.03299 -9.79460 -9.71879 -9.32348 -9.31167 -9.01362 -8.69313 -8.36742 -7.03751 -5.82279 -3.11216 0.73820 0.95669 1.42298 1.63602 2.36136 3.00601 3.40355 3.45523 3.47080 3.53726 4.02080 4.04856 4.27894 4.40291 4.54911 4.55797 4.61111 4.64214 4.74400 4.92811 4.95588 5.00350 5.16904 5.26090 5.27980 5.35079 5.40786 5.52286 5.58080 5.67924 5.73383 5.74801 5.86640 5.91614 5.97601 6.14610 6.20278 6.26551 6.30603 6.34441 6.45476 6.57290 6.66901 6.72213 6.90525 7.11350 7.21424 7.25399 7.64060 7.65128 7.95062 8.35982 9.47448 10.02672 10.37779 11.40313 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.001609 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.459717 B =17396.702536 C =17675.567892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.053 4.053 14 C -0.121 4.121 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.167 3.833 18 N -0.723 5.723 19 C 0.512 3.488 20 O -0.535 6.535 21 C -0.099 4.099 22 C -0.117 4.117 23 C -0.061 4.061 24 C -0.172 4.172 25 C 0.095 3.905 26 N -0.485 5.485 27 C 0.113 3.887 28 C -0.099 4.099 29 C -0.106 4.106 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.403 0.597 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.118 0.882 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -5.551 26.326 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.372 4.372 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.132 4.132 17 C 0.044 3.956 18 N -0.376 5.376 19 C 0.297 3.703 20 O -0.411 6.411 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.087 4.087 24 C -0.191 4.191 25 C -0.061 4.061 26 N -0.194 5.194 27 C -0.044 4.044 28 C -0.117 4.117 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.238 0.762 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.136 0.864 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.528 -5.202 27.099 27.963 hybrid contribution -0.439 -0.262 -1.986 2.051 sum -4.967 -5.464 25.113 26.176 Atomic orbital electron populations 1.22418 0.98231 1.01122 1.00154 1.19259 0.92164 0.95028 0.84218 0.92607 1.42523 1.78222 1.10699 1.04913 1.19245 1.36830 0.94015 0.87123 0.91048 1.24743 1.01952 0.95993 0.98121 1.69656 1.50657 1.08666 1.29011 0.86183 0.77829 0.78597 0.83528 1.21691 1.21758 1.20720 1.20543 0.95188 0.94053 0.95588 1.21022 1.00007 0.99825 0.93149 1.20924 0.99602 0.93493 0.98047 1.19638 1.04218 0.93845 0.95465 1.20147 0.88300 0.99919 0.87207 1.46160 1.12283 1.60096 1.19022 1.20499 0.90273 0.77689 0.81796 1.90751 1.24654 1.50761 1.74955 1.20608 0.97281 1.02850 0.93247 1.20287 1.01204 0.94449 0.95961 1.21456 0.95592 0.93958 0.97733 1.22125 1.00913 1.01549 0.94548 1.22777 0.95588 0.89428 0.98351 1.67694 1.13766 1.11407 1.26489 1.22602 0.93304 1.00267 0.88228 1.21012 0.98277 0.99463 0.92985 1.21093 0.99129 0.94448 0.97757 0.94338 0.92379 0.93339 0.77997 0.93445 0.86104 0.86485 0.90849 0.90806 0.76247 0.87538 0.87402 0.84939 0.84713 0.82799 0.83020 0.86363 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.47 37.15 0.35 -2.39 16 2 C 0.20 3.90 3.09 -69.08 -0.21 3.69 16 3 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 4 N -0.72 -17.51 5.07 -54.55 -0.28 -17.79 16 5 C -0.24 -6.53 9.93 -15.05 -0.15 -6.68 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 9 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C -0.05 -0.87 4.95 -104.62 -0.52 -1.39 16 14 C -0.12 -1.70 9.67 -39.59 -0.38 -2.08 16 15 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 16 C -0.13 -1.55 5.25 -104.62 -0.55 -2.10 16 17 C 0.17 1.76 5.80 -5.19 -0.03 1.73 16 18 N -0.72 -6.14 5.55 -61.47 -0.34 -6.48 16 19 C 0.51 4.87 7.82 -10.98 -0.09 4.79 16 20 O -0.53 -7.50 16.03 5.55 0.09 -7.41 16 21 C -0.10 -0.60 5.85 -29.04 -0.17 -0.77 16 22 C -0.12 -0.96 4.39 -104.48 -0.46 -1.42 16 23 C -0.06 -0.48 9.86 -39.28 -0.39 -0.86 16 24 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 25 C 0.10 0.79 11.18 -17.54 -0.20 0.60 16 26 N -0.49 -5.07 10.36 -13.25 -0.14 -5.20 16 27 C 0.11 1.05 10.86 -17.55 -0.19 0.86 16 28 C -0.10 -1.31 9.70 -39.59 -0.38 -1.70 16 29 C -0.11 -1.70 9.05 -39.58 -0.36 -2.06 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.38 9.85 6.07 -40.82 -0.25 9.60 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.12 1.51 8.04 -52.49 -0.42 1.08 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.40 2.58 8.46 -40.82 -0.35 2.24 16 40 H 0.11 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.11 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.13 2.23 6.92 -52.49 -0.36 1.86 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -34.17 401.85 -10.33 -44.50 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.82 Total: 9.69 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -4.60 Total: -13.47 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.03 Total: -56.36 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.17 -10.33 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272692180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.871 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds