Wall clock time and date at job start Tue Mar 31 2020 22:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47471 * 2 1 4 4 N 1.46503 * 109.47563 * 239.99216 * 2 1 3 5 5 C 1.36945 * 119.99455 * 85.00232 * 4 2 1 6 6 H 1.07994 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99577 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99969 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47182 * 89.99629 * 9 7 5 11 11 H 1.48498 * 109.47304 * 210.00140 * 9 7 5 12 12 H 1.48506 * 109.47170 * 329.99699 * 9 7 5 13 13 C 1.50709 * 109.47114 * 119.99547 * 2 1 3 14 14 C 1.38238 * 119.99977 * 260.00114 * 13 2 1 15 15 C 1.38226 * 119.99913 * 179.97438 * 14 13 2 16 16 C 1.38243 * 120.00031 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99651 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.46993 * 90.00513 * 17 16 15 19 19 C 1.34782 * 119.99968 * 179.97438 * 18 17 16 20 20 O 1.21284 * 119.99341 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00088 * 179.97438 * 19 18 17 22 22 C 1.50695 * 109.47115 * 179.97438 * 21 19 18 23 23 C 1.38678 * 120.41675 * 270.25421 * 22 21 19 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 C 1.38229 * 119.99912 * 0.25371 * 16 15 14 29 29 C 1.38233 * 119.99970 * 79.98009 * 13 2 1 30 30 H 1.08999 * 109.47856 * 300.00549 * 1 2 3 31 31 H 1.09007 * 109.47130 * 60.00625 * 1 2 3 32 32 H 1.09005 * 109.47471 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00371 * 265.00083 * 4 2 1 34 34 H 0.96998 * 119.99557 * 180.02562 * 8 7 5 35 35 H 1.08000 * 119.99599 * 359.97438 * 14 13 2 36 36 H 1.07998 * 120.00007 * 179.97438 * 15 14 13 37 37 H 1.08999 * 109.47162 * 329.99870 * 17 16 15 38 38 H 1.09000 * 109.46806 * 210.00275 * 17 16 15 39 39 H 0.97000 * 120.00028 * 359.97438 * 18 17 16 40 40 H 1.09001 * 109.46626 * 59.99898 * 21 19 18 41 41 H 1.08996 * 109.46931 * 299.99770 * 21 19 18 42 42 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 43 43 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 44 44 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.00196 * 179.72723 * 28 16 15 47 47 H 1.07998 * 119.99959 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5092 8 7 2.9245 -1.9393 -3.4499 9 14 2.7893 0.2693 -5.1185 10 1 4.1515 0.8545 -5.2038 11 1 2.5785 -0.6622 -6.2556 12 1 1.7792 1.3564 -5.1754 13 6 2.0323 -0.7104 1.2306 14 6 2.4586 0.0196 2.3244 15 6 2.9189 -0.6319 3.4532 16 6 2.9533 -2.0135 3.4882 17 6 3.4557 -2.7238 4.7188 18 7 2.3360 -2.9730 5.6300 19 6 2.5489 -3.6014 6.8032 20 8 3.6674 -3.9609 7.1042 21 6 1.3972 -3.8572 7.7409 22 6 1.8993 -4.5687 8.9708 23 6 1.9413 -5.9542 9.0124 24 6 2.4059 -6.5658 10.1665 25 6 2.8138 -5.7797 11.2279 26 7 2.7650 -4.4643 11.1509 27 6 2.3290 -3.8487 10.0691 28 6 2.5324 -2.7433 2.3923 29 6 2.0663 -2.0918 1.2657 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6319 -1.1524 34 1 3.2479 -2.3966 -4.2419 35 1 2.4321 1.0989 2.2968 36 1 3.2524 -0.0617 4.3076 37 1 4.1995 -2.1031 5.2183 38 1 3.9082 -3.6728 4.4312 39 1 1.4413 -2.6858 5.3891 40 1 0.6529 -4.4773 7.2413 41 1 0.9454 -2.9080 8.0288 42 1 1.6157 -6.5428 8.1676 43 1 2.4483 -7.6427 10.2356 44 1 3.1774 -6.2484 12.1304 45 1 2.3032 -2.7693 10.0432 46 1 2.5634 -3.8226 2.4179 47 1 1.7325 -2.6621 0.4115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272692180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:55 Heat of formation + Delta-G solvation = 6.992419 kcal Electronic energy + Delta-G solvation = -27011.706831 eV Core-core repulsion = 23158.242273 eV Total energy + Delta-G solvation = -3853.464557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.40500 -40.71984 -40.05143 -37.43314 -35.74088 -34.54802 -34.08984 -32.83223 -31.95511 -31.69227 -30.14575 -28.99958 -26.83183 -25.78094 -24.49554 -23.87071 -23.46809 -22.81372 -21.42942 -21.05398 -19.39106 -18.37966 -17.94518 -17.46248 -17.38458 -17.02404 -16.67990 -16.29104 -15.91756 -15.76095 -15.74939 -15.15627 -15.03195 -14.80432 -14.51086 -14.34983 -14.26978 -14.16740 -13.93440 -13.81741 -13.71473 -13.44104 -13.00072 -12.96620 -12.77844 -12.70274 -12.47640 -12.41731 -12.14452 -12.00691 -11.59666 -11.52251 -11.15065 -10.99665 -10.68573 -10.39994 -10.10560 -9.90861 -9.77842 -9.51610 -9.02124 -7.94368 -5.22559 0.15172 0.33684 0.38996 0.54425 1.47485 1.48755 1.56980 1.65770 2.26604 2.56215 2.87509 3.01208 3.40384 3.52264 3.68345 3.74597 3.88261 3.94463 3.99959 4.03136 4.07454 4.11229 4.13877 4.17708 4.36459 4.51115 4.55437 4.59956 4.61362 4.72028 4.78549 4.80170 4.81777 4.90722 5.02371 5.08309 5.13508 5.20423 5.23669 5.32126 5.39773 5.43635 5.50730 5.57539 5.64736 5.80826 5.85394 6.11223 6.28131 6.57827 7.04754 7.26775 7.34313 8.09528 8.33076 9.29177 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.001609 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.459717 B =17396.702536 C =17675.567892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 H 0.054 0.946 4 N -0.735 5.735 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.093 4.093 16 C -0.114 4.114 17 C 0.173 3.827 18 N -0.712 5.712 19 C 0.513 3.487 20 O -0.584 6.584 21 C -0.091 4.091 22 C -0.124 4.124 23 C -0.074 4.074 24 C -0.173 4.173 25 C 0.079 3.921 26 N -0.518 5.518 27 C 0.092 3.908 28 C -0.098 4.098 29 C -0.124 4.124 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.174 0.826 45 H 0.162 0.838 46 H 0.131 0.869 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -4.847 27.998 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.089 3.911 3 H 0.072 0.928 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.095 0.905 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.075 4.075 14 C -0.140 4.140 15 C -0.111 4.111 16 C -0.114 4.114 17 C 0.049 3.951 18 N -0.365 5.365 19 C 0.301 3.699 20 O -0.464 6.464 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.100 4.100 24 C -0.192 4.192 25 C -0.078 4.078 26 N -0.227 5.227 27 C -0.065 4.065 28 C -0.117 4.117 29 C -0.143 4.143 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.178 0.822 44 H 0.191 0.809 45 H 0.179 0.821 46 H 0.149 0.851 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.458 -4.446 28.800 29.648 hybrid contribution -0.173 -0.496 -2.349 2.407 sum -5.631 -4.942 26.450 27.491 Atomic orbital electron populations 1.22243 0.96628 1.00936 1.00925 1.19440 0.93174 0.94664 0.83773 0.92841 1.42732 1.78514 1.10440 1.05955 1.19648 1.34904 0.94321 0.88210 0.90463 1.25528 1.02989 0.96878 1.01411 1.69816 1.52646 1.10210 1.29395 0.85168 0.77832 0.77481 0.79459 1.21640 1.22386 1.19295 1.20323 0.97430 0.94220 0.95535 1.21192 0.99398 1.00639 0.92762 1.21212 0.98124 0.93603 0.98166 1.19737 1.02518 0.93936 0.95254 1.19984 0.88896 0.99343 0.86855 1.46012 1.12391 1.59643 1.18438 1.21058 0.90435 0.76508 0.81895 1.90740 1.26853 1.52816 1.75961 1.20663 0.96146 1.04617 0.91625 1.20523 1.00924 0.94872 0.96363 1.21838 0.95456 0.94247 0.98502 1.22449 0.99907 1.02857 0.94036 1.23203 0.95785 0.89127 0.99640 1.67668 1.14911 1.12619 1.27512 1.22892 0.93885 1.01044 0.88635 1.21116 0.97798 1.00268 0.92481 1.20970 1.00744 0.94439 0.98097 0.90998 0.94019 0.94000 0.79247 0.94135 0.84498 0.83538 0.90829 0.91618 0.74681 0.84791 0.84643 0.83152 0.82224 0.80912 0.82083 0.85062 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.47 71.98 0.68 -4.32 16 2 C 0.20 7.57 3.09 44.24 0.14 7.70 16 3 H 0.05 2.05 7.94 -2.38 -0.02 2.03 16 4 N -0.74 -36.49 5.07 -326.49 -1.66 -38.15 16 5 C -0.24 -13.10 9.93 84.03 0.83 -12.26 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 9 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 C -0.07 -2.40 4.95 -19.86 -0.10 -2.50 16 14 C -0.12 -3.11 9.67 22.27 0.22 -2.90 16 15 C -0.09 -1.93 9.70 22.27 0.22 -1.72 16 16 C -0.11 -2.41 5.25 -19.86 -0.10 -2.51 16 17 C 0.17 3.22 5.80 85.63 0.50 3.71 16 18 N -0.71 -10.01 5.55 -466.77 -2.59 -12.60 16 19 C 0.51 8.56 7.82 87.66 0.69 9.24 16 20 O -0.58 -15.67 16.03 -3.04 -0.05 -15.72 16 21 C -0.09 -0.81 5.85 29.10 0.17 -0.64 16 22 C -0.12 -1.83 4.39 -19.77 -0.09 -1.92 16 23 C -0.07 -1.02 9.86 22.47 0.22 -0.80 16 24 C -0.17 -2.25 10.11 22.36 0.23 -2.03 16 25 C 0.08 1.25 11.18 84.69 0.95 2.20 16 26 N -0.52 -10.68 10.36 -195.83 -2.03 -12.71 16 27 C 0.09 1.64 10.86 84.67 0.92 2.56 16 28 C -0.10 -2.49 9.70 22.27 0.22 -2.28 16 29 C -0.12 -3.99 9.05 22.27 0.20 -3.79 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.37 19.94 6.07 -92.71 -0.56 19.38 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.14 3.02 8.04 -2.91 -0.02 2.99 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.42 3.81 8.46 -92.71 -0.78 3.03 16 40 H 0.13 0.50 8.10 -2.39 -0.02 0.48 16 41 H 0.14 0.49 8.09 -2.39 -0.02 0.47 16 42 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 46 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.10 3.79 6.92 -2.91 -0.02 3.77 16 Total: -1.00 -76.28 401.85 1.97 -74.30 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.36 Total: 31.96 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 6.35 Total: -16.12 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.99 Total: -122.31 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.05 Total: -15.72 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.28 1.97 -74.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272692180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds