Wall clock time and date at job start Tue Mar 31 2020 23:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35352 * 116.99782 * 2 1 4 4 C 1.38990 * 126.40745 * 95.31584 * 3 2 1 5 5 C 1.46922 * 126.49640 * 359.97438 * 4 3 2 6 6 O 1.21661 * 119.99941 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99679 * 180.27699 * 5 4 3 8 8 C 1.46495 * 119.99644 * 179.72189 * 7 5 4 9 9 H 1.09006 * 109.47544 * 325.00260 * 8 7 5 10 10 C 1.53007 * 109.47203 * 84.99982 * 8 7 5 11 11 C 1.52994 * 109.47434 * 204.99818 * 8 7 5 12 12 N 1.46900 * 109.46900 * 55.00060 * 11 8 7 13 13 C 1.46905 * 111.00238 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47571 * 179.97438 * 13 12 11 15 15 O 1.21295 * 119.99829 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00556 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00158 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00152 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99773 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99973 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00222 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47181 * 89.99770 * 21 19 17 23 23 H 1.48506 * 109.47468 * 209.99606 * 21 19 17 24 24 H 1.48500 * 109.47115 * 329.99679 * 21 19 17 25 25 C 1.41460 * 107.00507 * 180.24949 * 4 3 2 26 26 N 1.30314 * 108.13999 * 359.61342 * 25 4 3 27 27 N 1.34662 * 126.39975 * 275.34252 * 3 2 1 28 28 C 1.46495 * 125.74820 * 359.95183 * 27 3 2 29 29 H 1.08995 * 109.47088 * 64.90153 * 1 2 3 30 30 H 1.09008 * 109.46832 * 184.90014 * 1 2 3 31 31 H 1.08999 * 109.47258 * 304.90001 * 1 2 3 32 32 H 0.96991 * 120.00446 * 359.72687 * 7 5 4 33 33 H 1.08998 * 109.46930 * 59.99703 * 10 8 7 34 34 H 1.08996 * 109.47279 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47019 * 300.00169 * 10 8 7 36 36 H 1.08999 * 109.47973 * 175.00222 * 11 8 7 37 37 H 1.09005 * 109.47136 * 295.00551 * 11 8 7 38 38 H 1.00907 * 111.00123 * 56.04977 * 12 11 8 39 39 H 1.09001 * 109.47429 * 300.00879 * 13 12 11 40 40 H 1.09003 * 109.46784 * 60.00256 * 13 12 11 41 41 H 0.97006 * 119.99171 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99879 * 180.02562 * 20 19 17 43 43 H 1.08007 * 125.92854 * 179.73780 * 25 4 3 44 44 H 1.09004 * 109.47008 * 94.34242 * 28 27 3 45 45 H 1.08992 * 109.47520 * 214.34419 * 28 27 3 46 46 H 1.08998 * 109.47154 * 334.34653 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5103 1.8940 1.1138 5 6 2.4297 1.4503 2.5121 6 8 1.9137 0.3823 2.7826 7 7 2.9228 2.2289 3.4956 8 6 2.8369 1.7893 4.8904 9 1 1.9082 1.2391 5.0415 10 6 4.0257 0.8817 5.2132 11 6 2.8623 3.0100 5.8124 12 7 1.7927 3.9391 5.4242 13 6 1.7860 5.1257 6.2902 14 6 0.6785 6.0538 5.8623 15 8 -0.0354 5.7558 4.9281 16 7 0.4813 7.2149 6.5176 17 6 -0.5266 8.0589 6.1286 18 1 -1.1628 7.7932 5.2973 19 6 -0.7302 9.2557 6.8045 20 7 -1.6966 10.0645 6.4320 21 14 0.3697 9.7150 8.2427 22 1 1.5400 10.4822 7.7456 23 1 -0.3956 10.5478 9.2050 24 1 0.8391 8.4801 8.9209 25 6 3.0720 3.1053 0.6464 26 7 2.9559 3.1322 -0.6512 27 7 2.3163 1.9638 -1.0792 28 6 1.9976 1.6222 -2.4676 29 1 -0.3633 0.4359 -0.9306 30 1 -0.3633 -1.0240 0.0878 31 1 -0.3634 0.5880 0.8428 32 1 3.3344 3.0803 3.2799 33 1 4.9544 1.4319 5.0621 34 1 3.9620 0.5549 6.2511 35 1 4.0076 0.0120 4.5563 36 1 2.7094 2.6902 6.8431 37 1 3.8269 3.5102 5.7265 38 1 0.8940 3.4802 5.4334 39 1 1.6255 4.8202 7.3241 40 1 2.7432 5.6408 6.2081 41 1 1.0521 7.4530 7.2649 42 1 -1.8386 10.9002 6.9036 43 1 3.5210 3.8734 1.2587 44 1 1.0408 2.0670 -2.7408 45 1 2.7777 2.0065 -3.1246 46 1 1.9371 0.5388 -2.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275422651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:59 Heat of formation + Delta-G solvation = -16.635359 kcal Electronic energy + Delta-G solvation = -29271.802553 eV Core-core repulsion = 25006.464155 eV Total energy + Delta-G solvation = -4265.338398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72425 -39.35943 -38.44192 -38.33544 -36.54976 -34.28146 -33.76700 -33.55015 -31.66641 -31.14776 -29.90824 -27.73456 -27.59694 -26.98291 -25.02829 -23.40799 -22.88482 -21.60771 -20.84644 -20.21585 -19.37479 -18.56228 -18.27367 -17.01144 -16.66066 -16.62844 -15.86612 -15.76066 -15.18985 -14.97504 -14.91138 -14.81263 -14.68320 -14.13161 -14.07220 -13.91603 -13.69844 -13.30039 -13.17873 -13.04282 -12.93477 -12.65819 -12.40631 -12.22145 -12.18559 -12.03292 -11.70173 -11.66254 -11.52120 -11.16120 -10.92216 -10.60047 -10.48407 -9.97926 -9.75441 -9.67436 -9.57332 -9.02512 -8.71534 -8.59228 -8.20472 -8.15707 -6.31262 -3.82694 1.05119 1.89564 2.02409 3.01836 3.06342 3.14634 3.21383 3.31415 3.58376 3.74243 4.04531 4.10299 4.18222 4.71198 4.76028 4.77148 4.82308 4.85148 4.92965 5.02152 5.03829 5.08531 5.15206 5.20984 5.30636 5.34436 5.42582 5.48193 5.57767 5.62701 5.64881 5.79748 5.83255 5.92369 5.96368 6.10340 6.18937 6.61845 7.05153 7.10954 7.27646 7.53123 7.58184 7.71940 8.14519 8.44069 8.59717 8.95084 9.42387 9.82940 10.81948 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002459 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.012984 B =11384.069625 C =12646.081591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.318 3.682 4 C -0.292 4.292 5 C 0.599 3.401 6 O -0.549 6.549 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.086 0.914 10 C -0.161 4.161 11 C 0.048 3.952 12 N -0.666 5.666 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.563 6.563 16 N -0.591 5.591 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.097 3.903 26 N -0.278 5.278 27 N -0.373 5.373 28 C 0.093 3.907 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.197 0.803 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 -18.863 -9.331 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.145 3.855 4 C -0.307 4.307 5 C 0.386 3.614 6 O -0.427 6.427 7 N -0.355 5.355 8 C 0.044 3.956 9 H 0.104 0.896 10 C -0.220 4.220 11 C -0.082 4.082 12 N -0.299 5.299 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.445 6.445 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.522 5.522 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.090 4.090 26 N -0.101 5.101 27 N -0.162 5.162 28 C -0.048 4.048 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.238 0.762 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.214 0.786 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.108 -18.951 -11.399 25.212 hybrid contribution 0.246 0.404 2.542 2.586 sum 12.353 -18.546 -8.857 23.980 Atomic orbital electron populations 1.23144 0.76629 1.04570 1.01258 1.86005 1.21408 1.20349 1.92889 1.19324 0.95152 0.84592 0.86473 1.20019 1.18695 0.98632 0.93400 1.16898 0.77422 0.83648 0.83404 1.90775 1.45384 1.22725 1.83863 1.45532 1.61433 1.22999 1.05558 1.20887 0.99711 0.94410 0.80634 0.89565 1.22145 0.97902 1.00085 1.01862 1.22327 0.96716 0.92702 0.96482 1.60062 1.08512 1.07371 1.53924 1.21714 0.99647 0.92581 0.94567 1.19718 0.87482 0.83296 0.85991 1.90578 1.48987 1.74955 1.29951 1.42209 1.31487 1.18728 1.30660 1.19426 1.08796 0.98432 1.16667 0.86325 1.25043 0.96992 0.95980 0.98196 1.69625 1.30274 1.11317 1.40987 0.86663 0.81002 0.79037 0.82606 1.19597 1.20228 1.19538 1.23980 0.96924 0.96197 0.91869 1.77253 1.18331 1.00892 1.13606 1.48966 1.45634 1.14553 1.07036 1.21982 1.02874 1.02263 0.77650 0.93508 0.87587 0.91926 0.76175 0.92347 0.91757 0.91783 0.93897 0.90398 0.82803 0.93763 0.89439 0.79715 0.91625 0.78629 0.90233 0.88642 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.13 101.05 1.12 1.48 16 2 O -0.30 -3.64 9.74 -25.00 -0.24 -3.89 16 3 C 0.32 4.08 6.98 -16.03 -0.11 3.96 16 4 C -0.29 -3.90 6.15 -104.88 -0.64 -4.55 16 5 C 0.60 8.54 7.76 -12.74 -0.10 8.44 16 6 O -0.55 -9.35 16.04 -2.03 -0.03 -9.38 16 7 N -0.70 -8.27 4.79 -55.04 -0.26 -8.53 16 8 C 0.15 1.62 2.81 -67.93 -0.19 1.43 16 9 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 10 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 11 C 0.05 0.50 5.24 -3.83 -0.02 0.48 16 12 N -0.67 -9.53 5.85 -115.06 -0.67 -10.21 16 13 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 14 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16 15 O -0.56 -14.92 15.78 5.54 0.09 -14.83 16 16 N -0.59 -13.87 5.09 -10.97 -0.06 -13.92 16 17 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 21 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 25 C 0.10 1.15 11.50 -16.97 -0.20 0.95 16 26 N -0.28 -3.49 12.48 30.88 0.39 -3.10 16 27 N -0.37 -4.19 3.99 -67.68 -0.27 -4.46 16 28 C 0.09 0.62 11.41 59.84 0.68 1.30 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.17 7.55 -40.82 -0.31 3.86 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.35 5.61 8.43 -39.29 -0.33 5.28 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 43 H 0.20 1.71 7.50 -52.48 -0.39 1.31 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -37.21 396.54 -5.20 -42.41 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -6.71 Total: 15.17 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 0.53 Total: 15.24 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.10 Total: -65.19 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.19 Total: -28.10 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.21 -5.20 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275422651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.778 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds