Wall clock time and date at job start Tue Mar 31 2020 23:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35352 * 116.99782 * 2 1 4 4 C 1.38990 * 126.40745 * 95.31584 * 3 2 1 5 5 C 1.46922 * 126.49640 * 359.97438 * 4 3 2 6 6 O 1.21661 * 119.99941 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99679 * 180.27699 * 5 4 3 8 8 C 1.46495 * 119.99644 * 179.72189 * 7 5 4 9 9 H 1.09006 * 109.47544 * 325.00260 * 8 7 5 10 10 C 1.53007 * 109.47203 * 84.99982 * 8 7 5 11 11 C 1.52994 * 109.47434 * 204.99818 * 8 7 5 12 12 N 1.46900 * 109.46900 * 55.00060 * 11 8 7 13 13 C 1.46905 * 111.00238 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47571 * 179.97438 * 13 12 11 15 15 O 1.21295 * 119.99829 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00556 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00158 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00152 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99773 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99973 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00222 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47181 * 89.99770 * 21 19 17 23 23 H 1.48506 * 109.47468 * 209.99606 * 21 19 17 24 24 H 1.48500 * 109.47115 * 329.99679 * 21 19 17 25 25 C 1.41460 * 107.00507 * 180.24949 * 4 3 2 26 26 N 1.30314 * 108.13999 * 359.61342 * 25 4 3 27 27 N 1.34662 * 126.39975 * 275.34252 * 3 2 1 28 28 C 1.46495 * 125.74820 * 359.95183 * 27 3 2 29 29 H 1.08995 * 109.47088 * 64.90153 * 1 2 3 30 30 H 1.09008 * 109.46832 * 184.90014 * 1 2 3 31 31 H 1.08999 * 109.47258 * 304.90001 * 1 2 3 32 32 H 0.96991 * 120.00446 * 359.72687 * 7 5 4 33 33 H 1.08998 * 109.46930 * 59.99703 * 10 8 7 34 34 H 1.08996 * 109.47279 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47019 * 300.00169 * 10 8 7 36 36 H 1.08999 * 109.47973 * 175.00222 * 11 8 7 37 37 H 1.09005 * 109.47136 * 295.00551 * 11 8 7 38 38 H 1.00907 * 111.00123 * 56.04977 * 12 11 8 39 39 H 1.09001 * 109.47429 * 300.00879 * 13 12 11 40 40 H 1.09003 * 109.46784 * 60.00256 * 13 12 11 41 41 H 0.97006 * 119.99171 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99879 * 180.02562 * 20 19 17 43 43 H 1.08007 * 125.92854 * 179.73780 * 25 4 3 44 44 H 1.09004 * 109.47008 * 94.34242 * 28 27 3 45 45 H 1.08992 * 109.47520 * 214.34419 * 28 27 3 46 46 H 1.08998 * 109.47154 * 334.34653 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5103 1.8940 1.1138 5 6 2.4297 1.4503 2.5121 6 8 1.9137 0.3823 2.7826 7 7 2.9228 2.2289 3.4956 8 6 2.8369 1.7893 4.8904 9 1 1.9082 1.2391 5.0415 10 6 4.0257 0.8817 5.2132 11 6 2.8623 3.0100 5.8124 12 7 1.7927 3.9391 5.4242 13 6 1.7860 5.1257 6.2902 14 6 0.6785 6.0538 5.8623 15 8 -0.0354 5.7558 4.9281 16 7 0.4813 7.2149 6.5176 17 6 -0.5266 8.0589 6.1286 18 1 -1.1628 7.7932 5.2973 19 6 -0.7302 9.2557 6.8045 20 7 -1.6966 10.0645 6.4320 21 14 0.3697 9.7150 8.2427 22 1 1.5400 10.4822 7.7456 23 1 -0.3956 10.5478 9.2050 24 1 0.8391 8.4801 8.9209 25 6 3.0720 3.1053 0.6464 26 7 2.9559 3.1322 -0.6512 27 7 2.3163 1.9638 -1.0792 28 6 1.9976 1.6222 -2.4676 29 1 -0.3633 0.4359 -0.9306 30 1 -0.3633 -1.0240 0.0878 31 1 -0.3634 0.5880 0.8428 32 1 3.3344 3.0803 3.2799 33 1 4.9544 1.4319 5.0621 34 1 3.9620 0.5549 6.2511 35 1 4.0076 0.0120 4.5563 36 1 2.7094 2.6902 6.8431 37 1 3.8269 3.5102 5.7265 38 1 0.8940 3.4802 5.4334 39 1 1.6255 4.8202 7.3241 40 1 2.7432 5.6408 6.2081 41 1 1.0521 7.4530 7.2649 42 1 -1.8386 10.9002 6.9036 43 1 3.5210 3.8734 1.2587 44 1 1.0408 2.0670 -2.7408 45 1 2.7777 2.0065 -3.1246 46 1 1.9371 0.5388 -2.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275422651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:58 Heat of formation + Delta-G solvation = -49.448202 kcal Electronic energy + Delta-G solvation = -29273.225425 eV Core-core repulsion = 25006.464155 eV Total energy + Delta-G solvation = -4266.761269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.62014 -40.45793 -40.12518 -39.21758 -37.65238 -36.02606 -35.06510 -34.42290 -33.71234 -32.10876 -30.79770 -29.04349 -28.37746 -27.70848 -26.58811 -24.63002 -23.94286 -22.46749 -21.74372 -21.25054 -21.17168 -20.23402 -19.36844 -18.01717 -17.82825 -17.51989 -17.33061 -16.77409 -16.62861 -16.26893 -15.94256 -15.70672 -15.65055 -15.50557 -15.16357 -14.99971 -14.81395 -14.60885 -14.48018 -14.22420 -14.00337 -13.63889 -13.60702 -13.24388 -13.10449 -12.95486 -12.93701 -12.75673 -12.64273 -12.42390 -12.38893 -11.96418 -11.77034 -11.48570 -11.34792 -10.85613 -10.52055 -10.40564 -10.22277 -10.03901 -9.62835 -9.28611 -8.39457 -6.00267 0.12904 1.08397 1.10087 1.31923 1.38008 1.46605 2.00411 2.25174 2.32692 2.37530 2.63400 2.76690 3.17430 3.37659 3.47614 3.88088 3.97068 4.01630 4.16897 4.17969 4.26884 4.29835 4.30722 4.35167 4.44810 4.53126 4.56694 4.61141 4.63245 4.65402 4.72993 4.83774 4.88246 5.04114 5.14358 5.33976 5.35231 5.54889 5.68757 5.92936 6.08208 6.24301 6.35325 6.38081 6.62395 6.75561 6.91191 7.42413 7.43197 8.01010 8.78480 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002459 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.012984 B =11384.069625 C =12646.081591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.310 3.690 4 C -0.319 4.319 5 C 0.594 3.406 6 O -0.587 6.587 7 N -0.695 5.695 8 C 0.147 3.853 9 H 0.061 0.939 10 C -0.152 4.152 11 C 0.056 3.944 12 N -0.682 5.682 13 C 0.063 3.937 14 C 0.448 3.552 15 O -0.615 6.615 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.052 0.948 19 C -0.018 4.018 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.229 1.229 25 C 0.100 3.900 26 N -0.297 5.297 27 N -0.369 5.369 28 C 0.082 3.918 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.038 0.962 32 H 0.411 0.589 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.339 0.661 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.390 0.610 42 H 0.278 0.722 43 H 0.221 0.779 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.645 -19.139 -7.412 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.135 3.865 4 C -0.335 4.335 5 C 0.382 3.618 6 O -0.468 6.468 7 N -0.345 5.345 8 C 0.042 3.958 9 H 0.080 0.920 10 C -0.210 4.210 11 C -0.073 4.073 12 N -0.314 5.314 13 C -0.069 4.069 14 C 0.236 3.764 15 O -0.500 6.500 16 N -0.234 5.234 17 C -0.457 4.457 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.203 1.203 24 H -0.152 1.152 25 C -0.087 4.087 26 N -0.120 5.120 27 N -0.158 5.158 28 C -0.057 4.057 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.057 0.943 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.237 0.763 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.306 -19.229 -9.484 26.344 hybrid contribution -0.840 0.404 1.781 2.010 sum 14.466 -18.825 -7.704 24.960 Atomic orbital electron populations 1.23320 0.75245 1.05788 1.01460 1.85972 1.22757 1.20263 1.93001 1.19505 0.95145 0.84800 0.87057 1.20177 1.20198 0.99799 0.93349 1.17121 0.77089 0.83393 0.84195 1.90739 1.47284 1.24360 1.84466 1.45521 1.60482 1.22863 1.05675 1.20968 0.99523 0.95037 0.80238 0.92038 1.22056 0.97624 0.98929 1.02430 1.22383 0.96214 0.91577 0.97117 1.60068 1.08820 1.07962 1.54583 1.21650 0.97737 0.91557 0.95954 1.21106 0.87838 0.83141 0.84345 1.90562 1.51209 1.75995 1.32186 1.42031 1.30935 1.18747 1.31687 1.18989 1.10165 1.00443 1.16075 0.92947 1.26151 0.98669 0.94957 1.01812 1.69817 1.32782 1.12117 1.43115 0.85338 0.78409 0.80193 0.77386 1.18053 1.20304 1.15204 1.24342 0.96386 0.96087 0.91865 1.77197 1.19075 1.01778 1.13976 1.49278 1.44645 1.13738 1.08155 1.22374 1.04068 1.03652 0.75623 0.91116 0.85442 0.94328 0.75260 0.90621 0.89887 0.93991 0.91721 0.87920 0.84332 0.90540 0.86021 0.77414 0.91217 0.76308 0.88823 0.87264 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.13 113.37 1.26 1.93 16 2 O -0.31 -7.72 9.74 -79.48 -0.77 -8.50 16 3 C 0.31 8.06 6.98 84.44 0.59 8.65 16 4 C -0.32 -8.73 6.15 -20.03 -0.12 -8.85 16 5 C 0.59 17.39 7.76 86.52 0.67 18.06 16 6 O -0.59 -20.91 16.04 2.71 0.04 -20.86 16 7 N -0.70 -15.92 4.79 -446.27 -2.14 -18.06 16 8 C 0.15 2.99 2.81 44.99 0.13 3.12 16 9 H 0.06 1.57 7.58 -2.38 -0.02 1.56 16 10 C -0.15 -2.45 9.48 71.98 0.68 -1.77 16 11 C 0.06 0.96 5.24 86.30 0.45 1.41 16 12 N -0.68 -18.01 5.85 -517.93 -3.03 -21.04 16 13 C 0.06 1.73 6.17 85.55 0.53 2.26 16 14 C 0.45 19.50 7.82 87.66 0.69 20.19 16 15 O -0.62 -33.69 15.78 -3.08 -0.05 -33.74 16 16 N -0.59 -27.22 5.09 -306.99 -1.56 -28.78 16 17 C -0.33 -19.08 10.16 84.04 0.85 -18.23 16 18 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 19 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 20 N -0.94 -56.64 13.96 21.66 0.30 -56.33 16 21 Si 0.97 38.19 27.74 68.60 1.90 40.09 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 25 C 0.10 2.33 11.50 85.71 0.99 3.31 16 26 N -0.30 -7.35 12.48 -56.22 -0.70 -8.05 16 27 N -0.37 -8.16 3.99 -479.82 -1.91 -10.08 16 28 C 0.08 0.98 11.41 127.77 1.46 2.44 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.41 7.96 7.55 -92.72 -0.70 7.26 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.34 10.59 8.43 -89.69 -0.76 9.84 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.39 14.62 5.76 -92.70 -0.53 14.09 16 42 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.22 3.63 7.50 -2.91 -0.02 3.61 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 0.93 8.03 -2.39 -0.02 0.92 16 Total: -1.00 -88.88 396.54 -0.30 -89.17 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -1.01 Total: 44.16 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 8.64 Total: 32.02 kcal Atomic # 7 Polarization: -133.30 SS G_CDS: -9.04 Total: -142.34 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -0.78 Total: -63.10 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Total: -88.88 -0.30 -89.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275422651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.724 kcal (2) G-P(sol) polarization free energy of solvation -88.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds