Wall clock time and date at job start Tue Mar 31 2020 23:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 5 5 C 1.36944 * 120.00017 * 275.00375 * 4 2 1 6 6 H 1.07997 * 119.99813 * 359.97438 * 5 4 2 7 7 C 1.38806 * 119.99784 * 180.02562 * 5 4 2 8 8 N 1.31627 * 119.99898 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00444 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47040 * 90.00243 * 9 7 5 11 11 H 1.48499 * 109.47484 * 210.00232 * 9 7 5 12 12 H 1.48504 * 109.46967 * 330.00409 * 9 7 5 13 13 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 14 14 H 1.08996 * 109.46952 * 300.00302 * 13 2 1 15 15 C 1.52996 * 109.47131 * 179.97438 * 13 2 1 16 16 N 1.46500 * 109.47007 * 60.00219 * 13 2 1 17 17 C 1.34775 * 120.00054 * 205.00086 * 16 13 2 18 18 O 1.21570 * 119.99931 * 359.97438 * 17 16 13 19 19 C 1.47712 * 120.00139 * 180.02562 * 17 16 13 20 20 C 1.40189 * 120.45828 * 180.02562 * 19 17 16 21 21 C 1.38041 * 118.38417 * 180.02562 * 20 19 17 22 22 C 1.39515 * 119.21568 * 359.97438 * 21 20 19 23 23 C 1.48217 * 119.57637 * 180.02562 * 22 21 20 24 24 C 1.39434 * 120.12607 * 359.72508 * 23 22 21 25 25 C 1.37999 * 119.86583 * 179.74929 * 24 23 22 26 26 C 1.38334 * 120.12965 * 0.54588 * 25 24 23 27 27 C 1.38336 * 120.26467 * 359.70421 * 26 25 24 28 28 C 1.38001 * 120.12870 * 0.02562 * 27 26 25 29 29 N 1.32773 * 120.85427 * 0.02562 * 22 21 20 30 30 C 1.31522 * 121.76837 * 359.70107 * 29 22 21 31 31 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 34 34 H 0.96995 * 120.00293 * 94.99410 * 4 2 1 35 35 H 0.96997 * 120.00239 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46997 * 60.00426 * 15 13 2 37 37 H 1.09000 * 109.47054 * 180.02562 * 15 13 2 38 38 H 1.09000 * 109.47380 * 300.00763 * 15 13 2 39 39 H 0.97006 * 120.00149 * 24.99865 * 16 13 2 40 40 H 1.08000 * 120.81101 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.40055 * 180.02562 * 21 20 19 42 42 H 1.07994 * 120.06443 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.93154 * 180.27407 * 25 24 23 44 44 H 1.08002 * 119.87256 * 179.72038 * 26 25 24 45 45 H 1.08002 * 119.93975 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.06595 * 180.02562 * 28 27 26 47 47 H 1.08003 * 119.65134 * 180.31289 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6617 3.5090 8 7 2.7384 -0.0050 4.6428 9 14 3.0566 -2.4741 3.4252 10 1 4.4892 -2.6162 3.0609 11 1 2.8176 -3.1042 4.7485 12 1 2.2163 -3.1429 2.3995 13 6 2.0401 -0.7213 -1.2492 14 1 1.6767 -1.7489 -1.2491 15 6 3.5700 -0.7207 -1.2495 16 7 1.5518 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6063 18 8 1.7125 -1.8825 -3.6610 19 6 0.9312 -0.0066 -4.8125 20 6 0.7931 -0.6968 -6.0249 21 6 0.3302 -0.0039 -7.1255 22 6 0.0171 1.3495 -6.9958 23 6 -0.4811 2.1011 -8.1721 24 6 -0.6297 1.4593 -9.4010 25 6 -1.0988 2.1630 -10.4915 26 6 -1.4108 3.5052 -10.3699 27 6 -1.2605 4.1486 -9.1545 28 6 -0.7974 3.4540 -8.0556 29 7 0.1596 1.9730 -5.8322 30 6 0.5925 1.3469 -4.7596 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.0617 -0.4622 5.4348 36 1 3.9337 -1.2343 -0.3595 37 1 3.9333 -1.2342 -2.1397 38 1 3.9330 0.3070 -1.2496 39 1 1.3210 0.9105 -2.4018 40 1 1.0427 -1.7451 -6.0963 41 1 0.2111 -0.5035 -8.0755 42 1 -0.3815 0.4128 -9.4983 43 1 -1.2186 1.6658 -11.4427 44 1 -1.7734 4.0530 -11.2271 45 1 -1.5060 5.1966 -9.0654 46 1 -0.6808 3.9572 -7.1072 47 1 0.6907 1.8864 -3.8292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275526659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:37 Heat of formation + Delta-G solvation = 38.556350 kcal Electronic energy + Delta-G solvation = -27659.183880 eV Core-core repulsion = 23807.088037 eV Total energy + Delta-G solvation = -3852.095843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03500 -39.75721 -38.81513 -36.93675 -34.22600 -33.39286 -32.92251 -31.86209 -31.28956 -30.41386 -29.14681 -28.92421 -25.27709 -24.37408 -23.92223 -22.88404 -22.39889 -21.77716 -20.54111 -20.25486 -18.49624 -17.89587 -17.44341 -16.86333 -16.51413 -15.74989 -15.25603 -15.03313 -14.95486 -14.77313 -14.48325 -14.34220 -14.06239 -13.85525 -13.73450 -13.52218 -13.38136 -13.00222 -12.96571 -12.71977 -12.51309 -12.20972 -11.89865 -11.72161 -11.51337 -11.40297 -11.14622 -10.94070 -10.81846 -10.39456 -10.34257 -10.25501 -10.14214 -9.99370 -9.72337 -9.61605 -9.37504 -9.14027 -8.91670 -8.65473 -7.33512 -5.80725 -3.17432 -0.10821 0.85662 0.98546 1.16926 2.71033 3.05185 3.33173 3.36608 3.40115 3.44829 3.60419 3.71621 4.13211 4.42900 4.45250 4.51272 4.56291 4.58915 4.61752 4.72882 4.88483 5.02877 5.08517 5.16211 5.18221 5.34339 5.38414 5.42384 5.56064 5.59919 5.65734 5.68860 5.71770 5.95376 5.97042 6.02286 6.06482 6.11160 6.19824 6.21100 6.24799 6.34147 6.46107 6.51576 6.62586 6.74505 6.90059 7.44006 7.48234 7.93151 8.13886 8.37506 9.14870 9.87433 10.06058 11.37174 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.001907 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.095048 B =14677.377959 C =15340.094696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.742 5.742 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.086 0.914 15 C -0.155 4.155 16 N -0.709 5.709 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.185 4.185 20 C -0.013 4.013 21 C -0.171 4.171 22 C 0.187 3.813 23 C -0.056 4.056 24 C -0.098 4.098 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.127 4.127 28 C -0.075 4.075 29 N -0.480 5.480 30 C 0.143 3.857 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.398 0.602 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.137 0.863 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 5.335 -31.917 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.079 0.921 4 N -0.385 5.385 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.104 0.896 15 C -0.213 4.213 16 N -0.360 5.360 17 C 0.347 3.653 18 O -0.414 6.414 19 C -0.190 4.190 20 C -0.039 4.039 21 C -0.191 4.191 22 C 0.051 3.949 23 C -0.057 4.057 24 C -0.117 4.117 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.145 4.145 28 C -0.094 4.094 29 N -0.188 5.188 30 C -0.016 4.016 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.233 0.767 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.444 5.540 -31.643 32.976 hybrid contribution 0.395 -1.734 0.153 1.785 sum -7.049 3.806 -31.491 32.494 Atomic orbital electron populations 1.22429 0.98484 1.01208 1.00438 1.20367 0.92336 0.95921 0.85076 0.92122 1.42645 1.79871 1.09348 1.06657 1.19009 1.37286 0.95530 0.85489 0.89101 1.24648 1.01247 0.97450 0.95532 1.69695 1.52368 1.35599 1.00275 0.86603 0.78564 0.86758 0.76943 1.20974 1.21717 1.20218 1.21415 0.94573 0.97647 0.83577 0.89559 1.22072 0.94741 1.02317 1.02165 1.45965 1.66461 1.13967 1.09606 1.17940 0.77999 0.86519 0.82799 1.90785 1.50363 1.15395 1.84851 1.21124 1.06042 0.96022 0.95792 1.21677 0.91021 1.00876 0.90358 1.22059 1.02095 0.94744 1.00199 1.19956 0.93090 0.90497 0.91315 1.18524 1.01826 0.93904 0.91409 1.21273 0.98470 1.00068 0.91845 1.21078 0.99992 0.94639 0.98628 1.21330 0.98639 0.94840 0.97739 1.21204 1.00101 1.00327 0.92851 1.21404 0.95501 0.93118 0.99382 1.67618 1.13788 1.38789 0.98625 1.22967 0.91382 0.90570 0.96722 0.94279 0.93471 0.92036 0.80448 0.93006 0.90619 0.93130 0.92448 0.76653 0.83197 0.83865 0.85428 0.85570 0.85824 0.85552 0.84494 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.33 37.16 0.35 -2.39 16 2 C 0.17 3.07 2.52 -67.93 -0.17 2.90 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.74 -16.63 4.23 -53.42 -0.23 -16.86 16 5 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 9 Si 0.88 21.80 27.74 -169.99 -4.71 17.08 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 13 C 0.13 2.07 2.21 -67.93 -0.15 1.92 16 14 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 15 C -0.15 -2.44 9.33 37.16 0.35 -2.09 16 16 N -0.71 -8.94 4.34 -54.80 -0.24 -9.18 16 17 C 0.56 7.60 7.74 -12.39 -0.10 7.50 16 18 O -0.54 -9.08 16.07 5.30 0.09 -9.00 16 19 C -0.18 -2.04 5.89 -104.78 -0.62 -2.66 16 20 C -0.01 -0.13 9.70 -38.92 -0.38 -0.51 16 21 C -0.17 -1.45 9.44 -39.18 -0.37 -1.82 16 22 C 0.19 1.82 6.73 -82.88 -0.56 1.27 16 23 C -0.06 -0.49 5.88 -104.91 -0.62 -1.10 16 24 C -0.10 -0.66 9.42 -39.22 -0.37 -1.03 16 25 C -0.13 -0.73 10.03 -39.63 -0.40 -1.13 16 26 C -0.11 -0.63 10.04 -39.51 -0.40 -1.02 16 27 C -0.13 -0.84 10.03 -39.63 -0.40 -1.24 16 28 C -0.08 -0.63 9.57 -39.23 -0.38 -1.00 16 29 N -0.48 -5.09 9.40 -9.46 -0.09 -5.18 16 30 C 0.14 1.42 10.70 -17.17 -0.18 1.24 16 31 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.36 8.17 5.45 -40.82 -0.22 7.94 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.07 1.31 7.45 -51.93 -0.39 0.93 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 3.96 6.44 -40.82 -0.26 3.70 16 40 H 0.15 1.40 7.73 -52.49 -0.41 0.99 16 41 H 0.14 0.80 6.17 -52.49 -0.32 0.48 16 42 H 0.13 0.61 6.17 -52.49 -0.32 0.28 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 44 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.14 1.15 7.53 -52.49 -0.40 0.75 16 47 H 0.16 1.22 6.41 -52.48 -0.34 0.89 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -33.54 390.50 -9.56 -43.10 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.41 Total: 9.86 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -4.64 Total: -7.80 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.22 Total: -59.13 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.54 -9.56 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.660 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds