Wall clock time and date at job start Tue Mar 31 2020 23:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47329 * 2 1 4 4 N 1.46507 * 109.47135 * 119.99802 * 2 1 3 5 5 C 1.34774 * 119.99595 * 275.00199 * 4 2 1 6 6 O 1.21564 * 120.00550 * 359.97438 * 5 4 2 7 7 C 1.47711 * 119.99685 * 179.97438 * 5 4 2 8 8 C 1.40195 * 120.46153 * 179.97438 * 7 5 4 9 9 C 1.38038 * 118.38572 * 179.97438 * 8 7 5 10 10 C 1.39510 * 119.21583 * 359.97438 * 9 8 7 11 11 C 1.48219 * 119.57390 * 180.02562 * 10 9 8 12 12 C 1.39433 * 120.12845 * 359.72997 * 11 10 9 13 13 C 1.37992 * 119.86952 * 179.67730 * 12 11 10 14 14 C 1.38337 * 120.12870 * 0.61585 * 13 12 11 15 15 C 1.38341 * 120.26435 * 359.67847 * 14 13 12 16 16 C 1.38000 * 120.12711 * 0.02562 * 15 14 13 17 17 N 1.32768 * 120.85661 * 0.02562 * 10 9 8 18 18 C 1.31525 * 121.77121 * 359.72497 * 17 10 9 19 19 C 1.52998 * 109.47443 * 239.99657 * 2 1 3 20 20 H 1.09003 * 109.47082 * 300.00051 * 19 2 1 21 21 C 1.52995 * 109.47443 * 179.97438 * 19 2 1 22 22 N 1.46498 * 109.47009 * 59.99875 * 19 2 1 23 23 C 1.36935 * 120.00239 * 204.99963 * 22 19 2 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 19 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 19 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.09003 * 109.46933 * 60.00077 * 1 2 3 32 32 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47629 * 300.00460 * 1 2 3 34 34 H 0.96995 * 119.99636 * 94.99558 * 4 2 1 35 35 H 1.08003 * 120.80254 * 0.02562 * 8 7 5 36 36 H 1.07994 * 120.39056 * 180.02562 * 9 8 7 37 37 H 1.08002 * 120.06647 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.93948 * 180.31951 * 13 12 11 39 39 H 1.08000 * 119.87440 * 179.69848 * 14 13 12 40 40 H 1.07997 * 119.93792 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.06739 * 180.02562 * 16 15 14 42 42 H 1.07992 * 119.65607 * 180.29040 * 18 17 10 43 43 H 1.08996 * 109.47329 * 300.00343 * 21 19 2 44 44 H 1.09003 * 109.46933 * 60.00266 * 21 19 2 45 45 H 1.09004 * 109.47411 * 179.97438 * 21 19 2 46 46 H 0.97004 * 119.99747 * 25.00702 * 22 19 2 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1615 2.4116 7 6 2.6388 -0.7145 3.5634 8 6 2.7769 -0.0244 4.7759 9 6 3.2398 -0.7173 5.8763 10 6 3.5519 -2.0709 5.7469 11 6 4.0491 -2.8227 6.9236 12 6 4.2084 -2.1782 8.1497 13 6 4.6652 -2.8849 9.2433 14 6 4.9771 -4.2272 9.1218 15 6 4.8269 -4.8706 7.9064 16 6 4.3650 -4.1757 6.8072 17 7 3.4095 -2.6943 4.5834 18 6 2.9670 -2.0708 3.5132 19 6 2.0400 -0.7213 -1.2492 20 1 1.6767 -1.7490 -1.2491 21 6 3.5700 -0.7207 -1.2495 22 7 1.5517 -0.0308 -2.4454 23 6 1.4210 -0.7139 -3.6249 24 1 1.6775 -1.7619 -3.6733 25 6 0.9588 -0.0595 -4.7585 26 7 0.6410 1.2164 -4.6982 27 14 0.7798 -0.9916 -6.3674 28 1 2.0453 -0.8957 -7.1384 29 1 0.4805 -2.4179 -6.0825 30 1 -0.3288 -0.4021 -7.1604 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6317 1.1527 35 1 2.5263 1.0237 4.8473 36 1 3.3580 -0.2177 6.8264 37 1 3.9701 -1.1290 8.2445 38 1 4.7842 -2.3880 10.1948 39 1 5.3390 -4.7751 9.9793 40 1 5.0715 -5.9188 7.8176 41 1 4.2477 -4.6791 5.8589 42 1 2.8599 -2.6125 2.5852 43 1 3.9330 0.3070 -1.2497 44 1 3.9337 -1.2343 -0.3595 45 1 3.9334 -1.2350 -2.1392 46 1 1.3211 0.9104 -2.4018 47 1 0.7336 1.7003 -3.8626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275526660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:41 Heat of formation + Delta-G solvation = 34.775120 kcal Electronic energy + Delta-G solvation = -27632.831093 eV Core-core repulsion = 23780.571284 eV Total energy + Delta-G solvation = -3852.259809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02477 -39.73832 -38.80326 -36.89168 -34.30848 -33.41582 -32.92515 -31.90652 -31.28921 -30.24711 -29.10070 -28.17021 -25.25783 -24.36760 -23.87170 -22.98396 -22.41451 -21.84876 -20.57267 -20.27582 -18.37916 -17.60508 -17.55685 -16.86421 -16.51241 -15.64910 -15.31701 -15.02922 -14.96723 -14.82706 -14.54017 -14.27126 -13.98383 -13.79848 -13.64579 -13.59117 -13.37861 -13.16932 -12.98545 -12.76536 -12.64368 -11.99911 -11.77699 -11.72114 -11.51300 -11.31006 -10.98651 -10.71319 -10.57075 -10.33771 -10.28843 -10.14147 -10.12048 -10.02896 -9.70497 -9.37547 -9.25076 -9.09036 -8.87945 -8.64691 -7.08882 -6.12430 -3.13716 -0.10143 0.86209 0.98544 1.17382 2.72667 3.08142 3.33917 3.50438 3.54941 3.60745 3.68911 3.72238 4.13635 4.43717 4.45930 4.51465 4.59211 4.61512 4.66804 4.73612 4.89052 5.03138 5.13457 5.16400 5.20064 5.42405 5.45521 5.50463 5.56370 5.67225 5.69067 5.71213 5.75046 5.95792 5.99157 6.06179 6.07218 6.11334 6.20621 6.25764 6.29322 6.38141 6.48863 6.51570 6.68178 6.79256 6.91476 7.44889 7.50489 7.77408 8.16625 8.72516 9.17655 10.04013 10.18131 11.35604 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.001853 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.482918 B =15103.018431 C =15854.292030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.086 0.914 4 N -0.709 5.709 5 C 0.561 3.439 6 O -0.535 6.535 7 C -0.184 4.184 8 C -0.013 4.013 9 C -0.171 4.171 10 C 0.186 3.814 11 C -0.055 4.055 12 C -0.098 4.098 13 C -0.125 4.125 14 C -0.107 4.107 15 C -0.127 4.127 16 C -0.076 4.076 17 N -0.480 5.480 18 C 0.143 3.857 19 C 0.174 3.826 20 H 0.053 0.947 21 C -0.164 4.164 22 N -0.729 5.729 23 C -0.331 4.331 24 H 0.065 0.935 25 C -0.043 4.043 26 N -0.942 5.942 27 Si 1.082 2.918 28 H -0.296 1.296 29 H -0.295 1.295 30 H -0.288 1.288 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.397 0.603 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.368 0.632 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -9.937 29.152 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.104 0.896 4 N -0.360 5.360 5 C 0.346 3.654 6 O -0.413 6.413 7 C -0.189 4.189 8 C -0.039 4.039 9 C -0.191 4.191 10 C 0.051 3.949 11 C -0.056 4.056 12 C -0.117 4.117 13 C -0.143 4.143 14 C -0.126 4.126 15 C -0.145 4.145 16 C -0.094 4.094 17 N -0.188 5.188 18 C -0.017 4.017 19 C 0.063 3.937 20 H 0.071 0.929 21 C -0.224 4.224 22 N -0.372 5.372 23 C -0.462 4.462 24 H 0.083 0.917 25 C -0.241 4.241 26 N -0.587 5.587 27 Si 0.913 3.087 28 H -0.224 1.224 29 H -0.222 1.222 30 H -0.214 1.214 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.232 0.768 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.180 0.820 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.202 0.798 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.453 -10.062 27.437 30.159 hybrid contribution 0.397 0.527 1.611 1.741 sum 7.850 -9.535 29.048 31.565 Atomic orbital electron populations 1.22044 0.94736 1.01986 1.02272 1.21407 0.94545 0.97602 0.83421 0.89604 1.45990 1.66453 1.13892 1.09685 1.17945 0.78050 0.86550 0.82810 1.90788 1.50319 1.15356 1.84832 1.21141 1.05987 0.95968 0.95817 1.21685 0.90998 1.00925 0.90327 1.22058 1.02076 0.94711 1.00207 1.19951 0.93189 0.90506 0.91280 1.18524 1.01777 0.93878 0.91443 1.21275 0.98483 1.00046 0.91849 1.21079 1.00044 0.94617 0.98582 1.21331 0.98625 0.94864 0.97742 1.21201 1.00131 1.00304 0.92854 1.21401 0.95524 0.93154 0.99355 1.67611 1.13676 1.38883 0.98669 1.22953 0.91435 0.90609 0.96709 1.20330 0.92142 0.95596 0.85614 0.92947 1.22439 0.98902 1.01095 1.00006 1.42289 1.79346 1.09806 1.05768 1.20016 1.42251 0.95104 0.88814 0.91668 1.25760 0.99267 0.97505 1.01590 1.70847 1.50904 1.08411 1.28558 0.83197 0.76475 0.73799 0.75181 1.22350 1.22170 1.21402 0.90373 0.92843 0.93254 0.76804 0.83163 0.83845 0.85414 0.85558 0.85822 0.85566 0.84522 0.82012 0.93498 0.94493 0.92468 0.79805 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 37.16 0.35 -2.24 16 2 C 0.13 2.25 2.21 -67.93 -0.15 2.10 16 3 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 4 N -0.71 -9.53 4.34 -54.79 -0.24 -9.77 16 5 C 0.56 7.99 7.74 -12.39 -0.10 7.90 16 6 O -0.54 -9.50 16.07 5.31 0.09 -9.41 16 7 C -0.18 -2.13 5.89 -104.77 -0.62 -2.75 16 8 C -0.01 -0.14 9.70 -38.92 -0.38 -0.51 16 9 C -0.17 -1.50 9.44 -39.18 -0.37 -1.87 16 10 C 0.19 1.87 6.73 -82.89 -0.56 1.31 16 11 C -0.06 -0.49 5.88 -104.91 -0.62 -1.11 16 12 C -0.10 -0.68 9.42 -39.23 -0.37 -1.05 16 13 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 14 C -0.11 -0.64 10.04 -39.51 -0.40 -1.04 16 15 C -0.13 -0.86 10.03 -39.63 -0.40 -1.26 16 16 C -0.08 -0.64 9.57 -39.23 -0.38 -1.02 16 17 N -0.48 -5.24 9.40 -9.46 -0.09 -5.33 16 18 C 0.14 1.48 10.70 -17.16 -0.18 1.29 16 19 C 0.17 3.27 2.52 -67.93 -0.17 3.10 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 C -0.16 -2.88 9.33 37.16 0.35 -2.53 16 22 N -0.73 -17.45 4.42 -53.43 -0.24 -17.68 16 23 C -0.33 -8.98 9.93 -15.06 -0.15 -9.13 16 24 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 25 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 26 N -0.94 -28.72 13.70 55.49 0.76 -27.96 16 27 Si 1.08 25.61 29.92 -169.99 -5.09 20.52 16 28 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.08 1.50 7.45 -51.93 -0.39 1.11 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.26 6.44 -40.82 -0.26 4.00 16 35 H 0.15 1.47 7.73 -52.48 -0.41 1.06 16 36 H 0.14 0.84 6.17 -52.49 -0.32 0.52 16 37 H 0.13 0.63 6.17 -52.49 -0.32 0.31 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.12 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.14 1.17 7.53 -52.49 -0.40 0.77 16 42 H 0.16 1.30 6.41 -52.49 -0.34 0.96 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.37 9.25 6.42 -40.82 -0.26 8.99 16 47 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -33.66 391.91 -9.86 -43.52 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.34 Total: 11.47 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.63 Total: -11.27 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.20 Total: -60.74 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.09 Total: 20.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.66 -9.86 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.299 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds