Wall clock time and date at job start Tue Mar 31 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47329 * 2 1 4 4 N 1.46507 * 109.47135 * 119.99802 * 2 1 3 5 5 C 1.34774 * 119.99595 * 275.00199 * 4 2 1 6 6 O 1.21564 * 120.00550 * 359.97438 * 5 4 2 7 7 C 1.47711 * 119.99685 * 179.97438 * 5 4 2 8 8 C 1.40195 * 120.46153 * 179.97438 * 7 5 4 9 9 C 1.38038 * 118.38572 * 179.97438 * 8 7 5 10 10 C 1.39510 * 119.21583 * 359.97438 * 9 8 7 11 11 C 1.48219 * 119.57390 * 180.02562 * 10 9 8 12 12 C 1.39433 * 120.12845 * 359.72997 * 11 10 9 13 13 C 1.37992 * 119.86952 * 179.67730 * 12 11 10 14 14 C 1.38337 * 120.12870 * 0.61585 * 13 12 11 15 15 C 1.38341 * 120.26435 * 359.67847 * 14 13 12 16 16 C 1.38000 * 120.12711 * 0.02562 * 15 14 13 17 17 N 1.32768 * 120.85661 * 0.02562 * 10 9 8 18 18 C 1.31525 * 121.77121 * 359.72497 * 17 10 9 19 19 C 1.52998 * 109.47443 * 239.99657 * 2 1 3 20 20 H 1.09003 * 109.47082 * 300.00051 * 19 2 1 21 21 C 1.52995 * 109.47443 * 179.97438 * 19 2 1 22 22 N 1.46498 * 109.47009 * 59.99875 * 19 2 1 23 23 C 1.36935 * 120.00239 * 204.99963 * 22 19 2 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 19 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 19 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.09003 * 109.46933 * 60.00077 * 1 2 3 32 32 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47629 * 300.00460 * 1 2 3 34 34 H 0.96995 * 119.99636 * 94.99558 * 4 2 1 35 35 H 1.08003 * 120.80254 * 0.02562 * 8 7 5 36 36 H 1.07994 * 120.39056 * 180.02562 * 9 8 7 37 37 H 1.08002 * 120.06647 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.93948 * 180.31951 * 13 12 11 39 39 H 1.08000 * 119.87440 * 179.69848 * 14 13 12 40 40 H 1.07997 * 119.93792 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.06739 * 180.02562 * 16 15 14 42 42 H 1.07992 * 119.65607 * 180.29040 * 18 17 10 43 43 H 1.08996 * 109.47329 * 300.00343 * 21 19 2 44 44 H 1.09003 * 109.46933 * 60.00266 * 21 19 2 45 45 H 1.09004 * 109.47411 * 179.97438 * 21 19 2 46 46 H 0.97004 * 119.99747 * 25.00702 * 22 19 2 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1615 2.4116 7 6 2.6388 -0.7145 3.5634 8 6 2.7769 -0.0244 4.7759 9 6 3.2398 -0.7173 5.8763 10 6 3.5519 -2.0709 5.7469 11 6 4.0491 -2.8227 6.9236 12 6 4.2084 -2.1782 8.1497 13 6 4.6652 -2.8849 9.2433 14 6 4.9771 -4.2272 9.1218 15 6 4.8269 -4.8706 7.9064 16 6 4.3650 -4.1757 6.8072 17 7 3.4095 -2.6943 4.5834 18 6 2.9670 -2.0708 3.5132 19 6 2.0400 -0.7213 -1.2492 20 1 1.6767 -1.7490 -1.2491 21 6 3.5700 -0.7207 -1.2495 22 7 1.5517 -0.0308 -2.4454 23 6 1.4210 -0.7139 -3.6249 24 1 1.6775 -1.7619 -3.6733 25 6 0.9588 -0.0595 -4.7585 26 7 0.6410 1.2164 -4.6982 27 14 0.7798 -0.9916 -6.3674 28 1 2.0453 -0.8957 -7.1384 29 1 0.4805 -2.4179 -6.0825 30 1 -0.3288 -0.4021 -7.1604 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6317 1.1527 35 1 2.5263 1.0237 4.8473 36 1 3.3580 -0.2177 6.8264 37 1 3.9701 -1.1290 8.2445 38 1 4.7842 -2.3880 10.1948 39 1 5.3390 -4.7751 9.9793 40 1 5.0715 -5.9188 7.8176 41 1 4.2477 -4.6791 5.8589 42 1 2.8599 -2.6125 2.5852 43 1 3.9330 0.3070 -1.2497 44 1 3.9337 -1.2343 -0.3595 45 1 3.9334 -1.2350 -2.1392 46 1 1.3211 0.9104 -2.4018 47 1 0.7336 1.7003 -3.8626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275526660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:40 Heat of formation + Delta-G solvation = 14.803823 kcal Electronic energy + Delta-G solvation = -27633.697113 eV Core-core repulsion = 23780.571284 eV Total energy + Delta-G solvation = -3853.125829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.88053 -40.70075 -39.50160 -38.39653 -35.94674 -34.30812 -33.73951 -33.39213 -31.79100 -31.42075 -30.16228 -29.87953 -26.10638 -25.81111 -25.08273 -24.32665 -23.04686 -22.61519 -21.72073 -21.63450 -19.52298 -19.27939 -18.37092 -17.84294 -17.06140 -16.91763 -16.66029 -16.21618 -15.89815 -15.61331 -15.50158 -15.32906 -15.25566 -15.16121 -14.80680 -14.64273 -14.33172 -14.27207 -14.07460 -13.64524 -13.53518 -13.38241 -13.25756 -12.92141 -12.62149 -12.51542 -12.28677 -12.20525 -12.00237 -11.86247 -11.68685 -11.41812 -11.19916 -11.13446 -10.98290 -10.81990 -10.58664 -10.25436 -9.86694 -9.29919 -9.12203 -8.35019 -5.30107 -0.84593 0.11719 0.49319 0.53933 1.60214 1.70615 1.75648 1.84085 1.92328 2.62576 2.74270 2.91861 3.05643 3.43869 3.46696 3.54715 3.68408 3.71592 3.80609 3.89376 4.01239 4.09030 4.13021 4.16300 4.22843 4.31197 4.48350 4.49129 4.58558 4.63936 4.66668 4.76018 4.81169 4.85289 4.91510 4.98344 5.01675 5.06547 5.16800 5.20426 5.35070 5.38692 5.42435 5.55818 5.57391 5.61693 5.64451 6.04161 6.39037 6.51924 6.70518 7.04859 7.10820 7.99501 8.11769 9.16431 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.001853 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.482918 B =15103.018431 C =15854.292030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 H 0.063 0.937 4 N -0.698 5.698 5 C 0.565 3.435 6 O -0.575 6.575 7 C -0.201 4.201 8 C -0.018 4.018 9 C -0.165 4.165 10 C 0.183 3.817 11 C -0.080 4.080 12 C -0.100 4.100 13 C -0.128 4.128 14 C -0.106 4.106 15 C -0.135 4.135 16 C -0.093 4.093 17 N -0.497 5.497 18 C 0.147 3.853 19 C 0.172 3.828 20 H 0.061 0.939 21 C -0.155 4.155 22 N -0.741 5.741 23 C -0.322 4.322 24 H 0.072 0.928 25 C -0.106 4.106 26 N -0.978 5.978 27 Si 1.129 2.871 28 H -0.288 1.288 29 H -0.271 1.271 30 H -0.297 1.297 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.413 0.587 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.182 0.818 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.358 0.642 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.003 -12.051 31.735 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.081 0.919 4 N -0.350 5.350 5 C 0.353 3.647 6 O -0.456 6.456 7 C -0.206 4.206 8 C -0.044 4.044 9 C -0.184 4.184 10 C 0.048 3.952 11 C -0.081 4.081 12 C -0.119 4.119 13 C -0.146 4.146 14 C -0.124 4.124 15 C -0.153 4.153 16 C -0.111 4.111 17 N -0.206 5.206 18 C -0.013 4.013 19 C 0.064 3.936 20 H 0.079 0.921 21 C -0.215 4.215 22 N -0.384 5.384 23 C -0.453 4.453 24 H 0.090 0.910 25 C -0.297 4.297 26 N -0.626 5.626 27 Si 0.954 3.046 28 H -0.215 1.215 29 H -0.196 1.196 30 H -0.224 1.224 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.251 0.749 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.199 0.801 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.190 0.810 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.604 -12.244 30.075 33.593 hybrid contribution 0.130 1.094 1.045 1.518 sum 8.734 -11.151 31.120 34.192 Atomic orbital electron populations 1.21934 0.94916 1.02318 1.01027 1.20950 0.94225 0.96452 0.83876 0.91857 1.45737 1.66201 1.14502 1.08544 1.18300 0.77037 0.86048 0.83363 1.90769 1.52151 1.17191 1.85459 1.20925 1.08081 0.96560 0.95021 1.21831 0.90909 1.01172 0.90459 1.22308 1.00988 0.94221 1.00913 1.20344 0.92287 0.91152 0.91437 1.18659 1.03352 0.94217 0.91856 1.21555 0.97920 1.01087 0.91330 1.21452 0.99072 0.94762 0.99325 1.21706 0.97463 0.95168 0.98109 1.21445 0.99856 1.01178 0.92781 1.21469 0.96518 0.93435 0.99715 1.67674 1.14437 1.39267 0.99178 1.23211 0.90583 0.90103 0.97419 1.20503 0.92934 0.95571 0.84636 0.92069 1.22296 0.97433 1.00576 1.01155 1.42470 1.79658 1.09520 1.06703 1.20353 1.39876 0.95364 0.89706 0.91048 1.27118 0.99842 0.97613 1.05150 1.70959 1.53814 1.09752 1.28086 0.82598 0.76276 0.73904 0.71799 1.21498 1.19564 1.22385 0.93065 0.91635 0.93000 0.74920 0.83002 0.80842 0.83524 0.83027 0.83381 0.84013 0.85495 0.80091 0.94859 0.90736 0.93840 0.80956 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.33 71.98 0.67 -4.25 16 2 C 0.15 5.03 2.21 44.99 0.10 5.13 16 3 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 4 N -0.70 -18.04 4.34 -445.54 -1.93 -19.97 16 5 C 0.56 15.85 7.74 86.75 0.67 16.52 16 6 O -0.58 -20.68 16.07 -3.92 -0.06 -20.74 16 7 C -0.20 -4.47 5.89 -19.96 -0.12 -4.59 16 8 C -0.02 -0.35 9.70 22.70 0.22 -0.13 16 9 C -0.17 -2.61 9.44 22.53 0.21 -2.40 16 10 C 0.18 3.42 6.73 41.96 0.28 3.71 16 11 C -0.08 -1.30 5.88 -20.05 -0.12 -1.42 16 12 C -0.10 -1.14 9.42 22.50 0.21 -0.93 16 13 C -0.13 -1.13 10.03 22.23 0.22 -0.91 16 14 C -0.11 -0.96 10.04 22.32 0.22 -0.74 16 15 C -0.13 -1.58 10.03 22.24 0.22 -1.35 16 16 C -0.09 -1.48 9.57 22.50 0.22 -1.26 16 17 N -0.50 -10.31 9.40 -183.83 -1.73 -12.03 16 18 C 0.15 2.84 10.70 85.07 0.91 3.75 16 19 C 0.17 6.41 2.52 44.99 0.11 6.52 16 20 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 21 C -0.15 -5.26 9.33 71.98 0.67 -4.59 16 22 N -0.74 -36.00 4.42 -322.95 -1.43 -37.43 16 23 C -0.32 -17.44 9.93 84.03 0.83 -16.61 16 24 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 25 C -0.11 -6.08 5.50 84.86 0.47 -5.61 16 26 N -0.98 -61.18 13.70 21.65 0.30 -60.88 16 27 Si 1.13 51.59 29.92 68.60 2.05 53.64 16 28 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 30 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 31 H 0.05 2.03 7.45 -2.39 -0.02 2.01 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 8.01 6.44 -92.71 -0.60 7.41 16 35 H 0.15 2.89 7.73 -2.91 -0.02 2.86 16 36 H 0.17 1.54 6.17 -2.91 -0.02 1.52 16 37 H 0.15 0.98 6.17 -2.91 -0.02 0.96 16 38 H 0.15 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.13 2.16 7.53 -2.91 -0.02 2.14 16 42 H 0.18 2.53 6.41 -2.91 -0.02 2.52 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.95 7.45 -2.39 -0.02 1.93 16 45 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.36 18.73 6.42 -92.71 -0.59 18.14 16 47 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 Total: -1.00 -74.33 391.91 3.17 -71.15 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.04 Total: 35.44 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 6.02 Total: -9.18 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -4.79 Total: -130.32 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -74.33 3.17 -71.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.958 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds