Wall clock time and date at job start Tue Mar 31 2020 23:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21572 * 119.99571 * 359.97438 * 17 16 13 19 19 C 1.47702 * 120.00480 * 179.97438 * 17 16 13 20 20 C 1.40187 * 120.46238 * 179.97438 * 19 17 16 21 21 C 1.38045 * 118.38570 * 179.97438 * 20 19 17 22 22 C 1.39509 * 119.21764 * 0.02562 * 21 20 19 23 23 C 1.48218 * 119.57637 * 180.02562 * 22 21 20 24 24 C 1.39433 * 120.12760 * 359.72769 * 23 22 21 25 25 C 1.37991 * 119.86887 * 179.67729 * 24 23 22 26 26 C 1.38344 * 120.12928 * 0.61774 * 25 24 23 27 27 C 1.38347 * 120.25942 * 359.67293 * 26 25 24 28 28 C 1.37991 * 120.13069 * 0.02562 * 27 26 25 29 29 N 1.32772 * 120.85366 * 359.97438 * 22 21 20 30 30 C 1.31519 * 121.76996 * 359.73634 * 29 22 21 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 34 34 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 35 35 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 37 37 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 38 38 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 39 39 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 40 40 H 1.08002 * 120.80764 * 0.02562 * 20 19 17 41 41 H 1.08001 * 120.39647 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.06191 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.93886 * 180.31645 * 25 24 23 44 44 H 1.07994 * 119.87306 * 179.70157 * 26 25 24 45 45 H 1.07994 * 119.93037 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.06781 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.65579 * 180.28633 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.5434 0.1835 5.8875 11 1 3.9161 -0.3171 5.9050 12 1 3.1105 1.6997 4.8263 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1493 -0.7872 -3.7064 19 6 1.5020 0.4284 -4.8306 20 6 2.1549 0.3410 -6.0681 21 6 1.5655 0.9377 -7.1646 22 6 0.3496 1.6031 -7.0063 23 6 -0.2904 2.2461 -8.1784 24 6 0.3231 2.1900 -9.4292 25 6 -0.2808 2.7847 -10.5182 26 6 -1.4863 3.4466 -10.3681 27 6 -2.0968 3.5108 -9.1283 28 6 -1.5055 2.9145 -8.0333 29 7 -0.2421 1.6671 -5.8195 30 6 0.2841 1.1070 -4.7522 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.2491 -1.6318 1.1526 35 1 3.2629 -2.3923 4.2382 36 1 1.9982 -2.7093 -2.0781 37 1 2.0699 -2.6550 -0.3002 38 1 0.5489 -2.2724 -1.1421 39 1 0.6117 0.3701 -2.3794 40 1 3.0956 -0.1811 -6.1615 41 1 2.0401 0.8899 -8.1336 42 1 1.2667 1.6780 -9.5465 43 1 0.1909 2.7376 -11.4885 44 1 -1.9529 3.9148 -11.2222 45 1 -3.0380 4.0285 -9.0172 46 1 -1.9831 2.9648 -7.0660 47 1 -0.2289 1.1762 -3.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275526661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:45 Heat of formation + Delta-G solvation = 38.854398 kcal Electronic energy + Delta-G solvation = -27605.767559 eV Core-core repulsion = 23753.684641 eV Total energy + Delta-G solvation = -3852.082918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99077 -39.70907 -38.78155 -36.93522 -34.08561 -33.34822 -32.88628 -31.83781 -31.26935 -30.15182 -28.94778 -28.23785 -25.30276 -24.45822 -24.26334 -23.21193 -22.41573 -21.88609 -20.62235 -19.36329 -18.35364 -17.69370 -17.32360 -16.79416 -16.48823 -15.51419 -15.22211 -14.94872 -14.89868 -14.77571 -14.64591 -14.30618 -14.15793 -13.88989 -13.74928 -13.49820 -13.31327 -13.00798 -12.86122 -12.63202 -12.46426 -12.00642 -11.70206 -11.66692 -11.49180 -11.32934 -10.96247 -10.85308 -10.52524 -10.31961 -10.28860 -10.22796 -10.10843 -9.99942 -9.74874 -9.60632 -9.35675 -8.97107 -8.91667 -8.61815 -7.02810 -5.80286 -3.09974 -0.07043 0.89392 1.00471 1.20066 2.77041 3.15429 3.37001 3.42037 3.47518 3.49002 3.63688 3.75403 4.16433 4.47067 4.49169 4.53644 4.56865 4.61584 4.67381 4.76656 4.92071 5.05565 5.18325 5.19076 5.30872 5.43438 5.45795 5.58683 5.59961 5.61852 5.71716 5.76068 5.79289 5.98161 6.03337 6.08361 6.11427 6.13561 6.23314 6.25895 6.36521 6.41882 6.53531 6.59087 6.68718 6.86033 7.04404 7.48276 7.56714 7.66999 8.23021 8.38140 9.49501 10.04339 10.39182 11.42204 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001844 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.871735 B =15179.188034 C =15814.241117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.167 3.833 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.160 4.160 16 N -0.711 5.711 17 C 0.559 3.441 18 O -0.535 6.535 19 C -0.183 4.183 20 C -0.013 4.013 21 C -0.171 4.171 22 C 0.185 3.815 23 C -0.055 4.055 24 C -0.098 4.098 25 C -0.125 4.125 26 C -0.108 4.108 27 C -0.127 4.127 28 C -0.076 4.076 29 N -0.480 5.480 30 C 0.142 3.858 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 8.556 -28.911 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.364 5.364 17 C 0.344 3.656 18 O -0.412 6.412 19 C -0.188 4.188 20 C -0.039 4.039 21 C -0.190 4.190 22 C 0.050 3.950 23 C -0.056 4.056 24 C -0.117 4.117 25 C -0.143 4.143 26 C -0.126 4.126 27 C -0.145 4.145 28 C -0.095 4.095 29 N -0.188 5.188 30 C -0.018 4.018 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.234 0.766 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.871 8.671 -28.679 31.247 hybrid contribution 0.507 -0.069 0.954 1.083 sum -8.364 8.602 -27.725 30.210 Atomic orbital electron populations 1.22549 0.99287 1.01342 0.99752 1.20367 0.92221 0.95640 0.86114 0.92955 1.42445 1.78202 1.10716 1.04851 1.19223 1.36804 0.93974 0.87256 0.91099 1.24747 1.01876 0.96016 0.98136 1.69659 1.50511 1.08705 1.29027 0.86179 0.77296 0.78809 0.83812 1.21723 1.21760 1.20764 1.21404 0.99148 0.92960 0.83360 0.89159 1.22146 1.01596 0.95648 1.02390 1.46194 1.25603 1.56293 1.08311 1.17972 0.84573 0.80079 0.82937 1.90792 1.22112 1.42902 1.85440 1.21160 0.98133 1.03902 0.95639 1.21688 0.98864 0.93057 0.90341 1.22059 0.96551 1.00156 1.00278 1.19945 0.90955 0.92969 0.91153 1.18526 0.95764 1.00009 0.91265 1.21274 0.99744 0.98949 0.91699 1.21077 0.96010 0.98582 0.98657 1.21329 0.95433 0.98257 0.97579 1.21198 1.00385 1.00188 0.92726 1.21399 0.93919 0.94574 0.99559 1.67607 1.33924 1.18840 0.98465 1.22950 0.91250 0.90553 0.97013 0.94997 0.92702 0.92245 0.77751 0.93427 0.93056 0.90339 0.92455 0.76646 0.83140 0.83865 0.85409 0.85575 0.85844 0.85585 0.84518 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.01 37.16 0.33 -2.41 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.72 -17.31 5.03 -53.43 -0.27 -17.58 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.14 2.29 2.62 -67.93 -0.18 2.11 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 C -0.16 -2.65 9.00 37.16 0.33 -2.32 16 16 N -0.71 -9.72 4.94 -54.80 -0.27 -9.99 16 17 C 0.56 8.09 7.74 -12.39 -0.10 7.99 16 18 O -0.53 -9.61 16.07 5.30 0.09 -9.52 16 19 C -0.18 -2.15 5.89 -104.78 -0.62 -2.77 16 20 C -0.01 -0.14 9.70 -38.92 -0.38 -0.52 16 21 C -0.17 -1.52 9.44 -39.18 -0.37 -1.89 16 22 C 0.19 1.87 6.73 -82.89 -0.56 1.32 16 23 C -0.05 -0.49 5.88 -104.91 -0.62 -1.11 16 24 C -0.10 -0.69 9.42 -39.23 -0.37 -1.06 16 25 C -0.13 -0.76 10.03 -39.63 -0.40 -1.15 16 26 C -0.11 -0.65 10.04 -39.50 -0.40 -1.04 16 27 C -0.13 -0.86 10.03 -39.63 -0.40 -1.26 16 28 C -0.08 -0.65 9.57 -39.23 -0.38 -1.02 16 29 N -0.48 -5.28 9.40 -9.46 -0.09 -5.37 16 30 C 0.14 1.49 10.70 -17.16 -0.18 1.31 16 31 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 32 H 0.05 0.90 6.57 -51.92 -0.34 0.56 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.39 9.85 5.77 -40.82 -0.24 9.62 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.46 6.29 -51.93 -0.33 1.13 16 38 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 39 H 0.40 4.39 4.63 -40.82 -0.19 4.21 16 40 H 0.15 1.48 7.73 -52.49 -0.41 1.08 16 41 H 0.14 0.85 6.17 -52.49 -0.32 0.52 16 42 H 0.13 0.64 6.17 -52.49 -0.32 0.32 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.14 1.17 7.53 -52.49 -0.40 0.78 16 47 H 0.16 1.32 6.41 -52.49 -0.34 0.99 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -32.82 385.91 -9.75 -42.58 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.02 Total: 11.87 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.71 Total: -7.97 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.10 Total: -59.87 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.82 -9.75 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.431 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds