Wall clock time and date at job start Tue Mar 31 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21572 * 119.99571 * 359.97438 * 17 16 13 19 19 C 1.47702 * 120.00480 * 179.97438 * 17 16 13 20 20 C 1.40187 * 120.46238 * 179.97438 * 19 17 16 21 21 C 1.38045 * 118.38570 * 179.97438 * 20 19 17 22 22 C 1.39509 * 119.21764 * 0.02562 * 21 20 19 23 23 C 1.48218 * 119.57637 * 180.02562 * 22 21 20 24 24 C 1.39433 * 120.12760 * 359.72769 * 23 22 21 25 25 C 1.37991 * 119.86887 * 179.67729 * 24 23 22 26 26 C 1.38344 * 120.12928 * 0.61774 * 25 24 23 27 27 C 1.38347 * 120.25942 * 359.67293 * 26 25 24 28 28 C 1.37991 * 120.13069 * 0.02562 * 27 26 25 29 29 N 1.32772 * 120.85366 * 359.97438 * 22 21 20 30 30 C 1.31519 * 121.76996 * 359.73634 * 29 22 21 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 34 34 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 35 35 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 37 37 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 38 38 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 39 39 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 40 40 H 1.08002 * 120.80764 * 0.02562 * 20 19 17 41 41 H 1.08001 * 120.39647 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.06191 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.93886 * 180.31645 * 25 24 23 44 44 H 1.07994 * 119.87306 * 179.70157 * 26 25 24 45 45 H 1.07994 * 119.93037 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.06781 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.65579 * 180.28633 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.5434 0.1835 5.8875 11 1 3.9161 -0.3171 5.9050 12 1 3.1105 1.6997 4.8263 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1493 -0.7872 -3.7064 19 6 1.5020 0.4284 -4.8306 20 6 2.1549 0.3410 -6.0681 21 6 1.5655 0.9377 -7.1646 22 6 0.3496 1.6031 -7.0063 23 6 -0.2904 2.2461 -8.1784 24 6 0.3231 2.1900 -9.4292 25 6 -0.2808 2.7847 -10.5182 26 6 -1.4863 3.4466 -10.3681 27 6 -2.0968 3.5108 -9.1283 28 6 -1.5055 2.9145 -8.0333 29 7 -0.2421 1.6671 -5.8195 30 6 0.2841 1.1070 -4.7522 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.2491 -1.6318 1.1526 35 1 3.2629 -2.3923 4.2382 36 1 1.9982 -2.7093 -2.0781 37 1 2.0699 -2.6550 -0.3002 38 1 0.5489 -2.2724 -1.1421 39 1 0.6117 0.3701 -2.3794 40 1 3.0956 -0.1811 -6.1615 41 1 2.0401 0.8899 -8.1336 42 1 1.2667 1.6780 -9.5465 43 1 0.1909 2.7376 -11.4885 44 1 -1.9529 3.9148 -11.2222 45 1 -3.0380 4.0285 -9.0172 46 1 -1.9831 2.9648 -7.0660 47 1 -0.2289 1.1762 -3.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275526661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:43 Heat of formation + Delta-G solvation = 19.115980 kcal Electronic energy + Delta-G solvation = -27606.623481 eV Core-core repulsion = 23753.684641 eV Total energy + Delta-G solvation = -3852.938840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.85603 -40.68369 -39.48865 -38.39664 -35.68802 -34.25610 -33.71043 -33.35600 -31.77532 -31.36471 -30.08433 -29.77521 -26.26178 -26.07569 -25.10612 -24.62084 -23.05481 -22.61808 -21.67099 -20.75887 -19.59280 -19.11010 -18.34536 -17.70477 -17.04375 -16.70869 -16.64227 -16.20919 -16.06920 -15.72259 -15.48951 -15.40225 -15.21550 -15.02597 -14.85506 -14.50989 -14.31150 -14.06652 -13.94023 -13.59926 -13.46143 -13.38629 -13.09772 -12.99120 -12.80462 -12.65738 -12.19063 -12.13097 -12.04434 -11.97396 -11.67635 -11.61928 -11.29414 -11.11035 -10.94959 -10.79872 -10.56125 -10.19035 -9.85159 -9.27815 -9.02837 -7.93265 -5.21969 -0.82203 0.13971 0.50928 0.55902 1.48578 1.49833 1.58026 1.79016 1.98729 2.58247 2.64925 2.94016 3.07499 3.40574 3.49287 3.60081 3.74726 3.83167 3.91794 3.98186 4.03004 4.07707 4.14714 4.18301 4.31308 4.33567 4.51031 4.59445 4.60666 4.65733 4.69312 4.83533 4.86540 4.95247 4.95892 5.02443 5.06128 5.18453 5.20143 5.24467 5.37688 5.45520 5.54362 5.57516 5.59089 5.63216 5.63641 6.05719 6.28804 6.43615 6.72637 7.10327 7.35629 8.09652 8.32819 9.30158 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001844 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.871735 B =15179.188034 C =15814.241117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 H 0.048 0.952 4 N -0.733 5.733 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.270 1.270 13 C 0.150 3.850 14 H 0.061 0.939 15 C -0.151 4.151 16 N -0.699 5.699 17 C 0.562 3.438 18 O -0.576 6.576 19 C -0.200 4.200 20 C -0.018 4.018 21 C -0.165 4.165 22 C 0.182 3.818 23 C -0.080 4.080 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.107 4.107 27 C -0.135 4.135 28 C -0.093 4.093 29 N -0.496 5.496 30 C 0.146 3.854 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.377 0.623 35 H 0.250 0.750 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 10.336 -31.542 34.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.066 0.934 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.195 1.195 13 C 0.044 3.956 14 H 0.079 0.921 15 C -0.209 4.209 16 N -0.353 5.353 17 C 0.350 3.650 18 O -0.456 6.456 19 C -0.206 4.206 20 C -0.044 4.044 21 C -0.184 4.184 22 C 0.047 3.953 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.125 4.125 27 C -0.153 4.153 28 C -0.111 4.111 29 N -0.205 5.205 30 C -0.014 4.014 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.251 0.749 40 H 0.170 0.830 41 H 0.192 0.808 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.145 0.855 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.378 10.509 -31.352 34.657 hybrid contribution 0.893 -0.523 1.537 1.853 sum -9.485 9.986 -29.815 32.843 Atomic orbital electron populations 1.22381 0.96529 1.01768 1.01271 1.20539 0.93960 0.94928 0.85009 0.93369 1.42638 1.78614 1.10465 1.05821 1.19612 1.34828 0.94310 0.88202 0.90431 1.25529 1.02903 0.96906 1.01430 1.69817 1.52450 1.10240 1.29432 0.85165 0.76804 0.78006 0.79924 1.21404 1.22556 1.19537 1.20952 0.97553 0.93186 0.83884 0.92107 1.22040 1.02422 0.95189 1.01232 1.45926 1.26006 1.56127 1.07213 1.18344 0.83886 0.79249 0.83543 1.90771 1.23968 1.44815 1.86058 1.20941 0.99214 1.05613 0.94807 1.21832 0.98985 0.93105 0.90454 1.22310 0.96009 0.99036 1.01056 1.20342 0.91212 0.92405 0.91326 1.18659 0.96451 1.01262 0.91665 1.21554 1.00397 0.98787 0.91162 1.21450 0.95971 0.97731 0.99469 1.21706 0.95336 0.97479 0.97956 1.21443 1.01078 1.00057 0.92684 1.21468 0.94295 0.95477 0.99890 1.67671 1.34402 1.19454 0.98966 1.23205 0.90676 0.89699 0.97791 0.90562 0.92824 0.93652 0.78920 0.94115 0.92944 0.92706 0.90775 0.74887 0.82997 0.80840 0.83527 0.83049 0.83404 0.84019 0.85466 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.01 71.98 0.65 -4.26 16 2 C 0.16 6.14 2.93 44.99 0.13 6.27 16 3 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 4 N -0.73 -35.86 5.03 -322.94 -1.62 -37.48 16 5 C -0.24 -12.92 9.93 84.03 0.83 -12.08 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 8 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 9 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.15 5.09 2.62 44.99 0.12 5.20 16 14 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 15 C -0.15 -5.05 9.00 71.98 0.65 -4.40 16 16 N -0.70 -18.47 4.94 -445.54 -2.20 -20.67 16 17 C 0.56 16.13 7.74 86.74 0.67 16.80 16 18 O -0.58 -21.10 16.07 -3.94 -0.06 -21.17 16 19 C -0.20 -4.55 5.89 -19.97 -0.12 -4.67 16 20 C -0.02 -0.36 9.70 22.70 0.22 -0.14 16 21 C -0.16 -2.64 9.44 22.53 0.21 -2.42 16 22 C 0.18 3.43 6.73 41.96 0.28 3.72 16 23 C -0.08 -1.30 5.88 -20.05 -0.12 -1.42 16 24 C -0.10 -1.15 9.42 22.50 0.21 -0.94 16 25 C -0.13 -1.14 10.03 22.24 0.22 -0.92 16 26 C -0.11 -0.97 10.04 22.32 0.22 -0.75 16 27 C -0.13 -1.58 10.03 22.24 0.22 -1.36 16 28 C -0.09 -1.48 9.57 22.50 0.22 -1.27 16 29 N -0.50 -10.36 9.40 -183.83 -1.73 -12.08 16 30 C 0.15 2.87 10.70 85.08 0.91 3.78 16 31 H 0.08 1.64 6.29 -2.39 -0.02 1.63 16 32 H 0.05 1.67 6.57 -2.38 -0.02 1.66 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.38 19.83 5.77 -92.71 -0.54 19.30 16 35 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 2.11 6.29 -2.39 -0.02 2.10 16 38 H 0.07 2.21 6.57 -2.39 -0.02 2.19 16 39 H 0.41 8.22 4.63 -92.71 -0.43 7.79 16 40 H 0.15 2.94 7.73 -2.91 -0.02 2.91 16 41 H 0.17 1.56 6.17 -2.91 -0.02 1.55 16 42 H 0.15 0.99 6.17 -2.91 -0.02 0.97 16 43 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 44 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 45 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 46 H 0.13 2.16 7.53 -2.91 -0.02 2.14 16 47 H 0.18 2.57 6.41 -2.91 -0.02 2.55 16 Total: -1.00 -72.77 385.91 2.76 -70.01 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.06 Total: 34.82 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 6.01 Total: -2.67 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.27 Total: -128.99 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.77 2.76 -70.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.128 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds