Wall clock time and date at job start Tue Mar 31 2020 23:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 N 1.46493 * 109.47225 * 240.00321 * 2 1 3 5 5 C 1.36936 * 120.00314 * 84.99627 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.53004 * 109.47083 * 119.99972 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.52996 * 109.47111 * 65.00206 * 13 2 1 16 16 N 1.46498 * 109.47222 * 304.99637 * 13 2 1 17 17 C 1.34779 * 120.00254 * 205.00055 * 16 13 2 18 18 O 1.21518 * 119.99455 * 0.02562 * 17 16 13 19 19 C 1.48171 * 120.00345 * 180.02562 * 17 16 13 20 20 C 1.39098 * 119.67052 * 179.72493 * 19 17 16 21 21 C 1.39728 * 118.91708 * 179.77333 * 20 19 17 22 22 C 1.48361 * 120.87230 * 180.25983 * 21 20 19 23 23 C 1.39354 * 120.12316 * 359.96181 * 22 21 20 24 24 C 1.38016 * 119.87455 * 179.72191 * 23 22 21 25 25 C 1.38328 * 120.12354 * 0.55068 * 24 23 22 26 26 C 1.38321 * 120.24591 * 359.72399 * 25 24 23 27 27 C 1.38023 * 120.12407 * 359.97438 * 26 25 24 28 28 C 1.39738 * 118.25226 * 0.48563 * 21 20 19 29 29 C 1.38320 * 119.21647 * 359.75664 * 28 21 20 30 30 N 1.31580 * 121.02584 * 359.97438 * 29 28 21 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99754 * 1 2 3 33 33 H 1.09002 * 109.47269 * 59.99514 * 1 2 3 34 34 H 0.97000 * 120.00040 * 264.99759 * 4 2 1 35 35 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 36 36 H 1.09002 * 109.47378 * 59.99587 * 15 13 2 37 37 H 1.08996 * 109.47096 * 179.97438 * 15 13 2 38 38 H 1.09004 * 109.47050 * 299.99699 * 15 13 2 39 39 H 0.97003 * 119.99759 * 25.00138 * 16 13 2 40 40 H 1.07997 * 120.54262 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.06287 * 359.97438 * 23 22 21 42 42 H 1.07993 * 119.93971 * 180.27440 * 24 23 22 43 43 H 1.08002 * 119.87543 * 179.74201 * 25 24 23 44 44 H 1.07993 * 119.93939 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.06020 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.38873 * 179.72418 * 28 21 20 47 47 H 1.07995 * 119.48078 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1491 -0.0074 -2.3757 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6619 -3.5092 8 7 2.7318 -0.0066 -4.6443 9 14 3.0543 -2.4747 -3.4257 10 1 4.4886 -2.6177 -3.0685 11 1 2.2186 -3.1415 -2.3951 12 1 2.8080 -3.1059 -4.7471 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6353 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0913 -0.1937 3.6276 18 8 3.1490 -0.7869 3.7063 19 6 1.5003 0.4305 4.8345 20 6 2.1592 0.3283 6.0553 21 6 1.5901 0.9269 7.1823 22 6 2.2584 0.8498 8.5046 23 6 3.4697 0.1736 8.6376 24 6 4.0898 0.1098 9.8689 25 6 3.5057 0.7059 10.9721 26 6 2.3007 1.3735 10.8470 27 6 1.6747 1.4488 9.6192 28 6 0.3726 1.5961 7.0322 29 6 -0.2202 1.6473 5.7835 30 7 0.3447 1.0774 4.7407 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 2.2491 -1.6317 -1.1526 35 1 3.0510 -0.4649 -5.4374 36 1 2.0699 -2.6550 0.3002 37 1 1.9990 -2.7094 2.0777 38 1 0.5489 -2.2724 1.1421 39 1 0.6119 0.3702 2.3794 40 1 3.0973 -0.2015 6.1300 41 1 3.9242 -0.2963 7.7780 42 1 5.0307 -0.4101 9.9723 43 1 3.9924 0.6500 11.9346 44 1 1.8489 1.8367 11.7116 45 1 0.7342 1.9706 9.5226 46 1 -0.1002 2.0673 7.8813 47 1 -1.1610 2.1636 5.6625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275530642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:20 Heat of formation + Delta-G solvation = 42.499465 kcal Electronic energy + Delta-G solvation = -27821.983749 eV Core-core repulsion = 23970.058893 eV Total energy + Delta-G solvation = -3851.924856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.02048 -39.70067 -38.90745 -37.03366 -34.35388 -33.84321 -32.21490 -31.75117 -31.16208 -30.08440 -29.56197 -28.55509 -25.41817 -24.60119 -24.32805 -23.17254 -22.24978 -22.05846 -20.42172 -19.32089 -18.55288 -17.84530 -17.36894 -16.75742 -16.13803 -15.74884 -15.58893 -15.28755 -14.92711 -14.75500 -14.64341 -14.34275 -14.02137 -13.95237 -13.77183 -13.63877 -13.57474 -13.21695 -12.72695 -12.58548 -12.47474 -12.12128 -11.76687 -11.75021 -11.50682 -11.35797 -11.10308 -10.87695 -10.82840 -10.58850 -10.33897 -10.32952 -10.02325 -9.76787 -9.56430 -9.55418 -9.43788 -8.95257 -8.87423 -8.83452 -7.29857 -5.76904 -3.13203 0.06217 0.47896 0.91948 1.40183 2.65407 3.08582 3.33911 3.38386 3.41507 3.46613 3.72141 3.86931 4.01290 4.22497 4.46192 4.50339 4.59387 4.60923 4.64215 4.69254 4.91346 5.05799 5.09676 5.21921 5.24612 5.31396 5.36273 5.44333 5.55023 5.56255 5.57943 5.61319 5.65787 5.94450 5.96062 6.02952 6.04192 6.11086 6.18405 6.19805 6.30899 6.34288 6.46246 6.49191 6.66096 6.76329 7.01110 7.35798 7.69452 7.98595 8.24074 8.41665 9.19558 9.91820 10.10811 11.41173 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.002017 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.536388 B =13880.344145 C =14580.426524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.276 1.276 12 H -0.291 1.291 13 C 0.130 3.870 14 H 0.091 0.909 15 C -0.162 4.162 16 N -0.695 5.695 17 C 0.567 3.433 18 O -0.535 6.535 19 C 0.091 3.909 20 C -0.107 4.107 21 C -0.006 4.006 22 C -0.055 4.055 23 C -0.100 4.100 24 C -0.118 4.118 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.102 4.102 28 C -0.149 4.149 29 C 0.105 3.895 30 N -0.459 5.459 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.410 0.590 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.142 0.858 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 2.770 33.993 34.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.388 5.388 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.203 1.203 12 H -0.217 1.217 13 C 0.026 3.974 14 H 0.109 0.891 15 C -0.220 4.220 16 N -0.347 5.347 17 C 0.351 3.649 18 O -0.412 6.412 19 C -0.047 4.047 20 C -0.128 4.128 21 C -0.014 4.014 22 C -0.055 4.055 23 C -0.118 4.118 24 C -0.136 4.136 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.120 4.120 28 C -0.169 4.169 29 C -0.054 4.054 30 N -0.171 5.171 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.198 0.802 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.159 0.841 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.509 2.544 32.952 33.356 hybrid contribution 0.239 -1.067 0.726 1.313 sum -4.270 1.477 33.678 33.980 Atomic orbital electron populations 1.22502 0.98663 1.01316 1.00499 1.20327 0.92485 0.95886 0.84984 0.92017 1.42792 1.79899 1.09433 1.06684 1.19051 1.37088 0.95628 0.85535 0.89086 1.24653 1.01315 0.97474 0.95550 1.69699 1.52640 1.35572 1.00098 0.86607 0.78610 0.86785 0.76864 1.20945 1.20270 1.21689 1.21428 0.99280 0.92810 0.83923 0.89055 1.22174 1.01946 0.95849 1.02021 1.46063 1.25962 1.55194 1.07518 1.17852 0.84259 0.80005 0.82817 1.90786 1.22014 1.43134 1.85253 1.21183 0.92126 0.97460 0.93934 1.22184 1.01114 0.98219 0.91248 1.19113 0.94039 0.95721 0.92547 1.18646 0.95357 0.99875 0.91629 1.21373 0.94342 0.97878 0.98256 1.21163 1.00186 0.99691 0.92521 1.21312 0.95638 0.97188 0.98875 1.21118 0.95773 0.99600 0.97368 1.21237 0.99861 0.98886 0.92063 1.22411 0.95364 0.99545 0.99566 1.22741 0.99379 0.95768 0.87510 1.67554 1.09098 1.06924 1.33507 0.92950 0.94231 0.91842 0.80242 0.93040 0.91262 0.92700 0.92061 0.75170 0.83198 0.85181 0.85449 0.85759 0.85594 0.85494 0.84066 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.01 37.16 0.33 -2.52 16 2 C 0.17 3.30 2.93 -67.93 -0.20 3.10 16 3 H 0.06 1.23 8.08 -51.92 -0.42 0.81 16 4 N -0.74 -17.36 4.84 -53.43 -0.26 -17.62 16 5 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 9 Si 0.88 22.15 27.74 -169.99 -4.72 17.44 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.51 6.51 56.52 0.37 -6.14 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C 0.13 2.21 2.62 -67.93 -0.18 2.03 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 C -0.16 -2.62 9.00 37.16 0.33 -2.28 16 16 N -0.70 -10.30 4.98 -54.65 -0.27 -10.58 16 17 C 0.57 8.68 7.78 -12.18 -0.09 8.58 16 18 O -0.54 -9.56 15.98 5.35 0.09 -9.47 16 19 C 0.09 1.16 6.75 -83.06 -0.56 0.60 16 20 C -0.11 -1.19 9.02 -38.71 -0.35 -1.54 16 21 C -0.01 -0.06 5.91 -104.61 -0.62 -0.68 16 22 C -0.06 -0.45 5.88 -104.90 -0.62 -1.07 16 23 C -0.10 -0.80 9.45 -39.25 -0.37 -1.17 16 24 C -0.12 -0.79 10.03 -39.63 -0.40 -1.18 16 25 C -0.11 -0.66 10.04 -39.52 -0.40 -1.05 16 26 C -0.12 -0.69 10.03 -39.63 -0.40 -1.09 16 27 C -0.10 -0.67 9.45 -39.25 -0.37 -1.04 16 28 C -0.15 -1.10 9.51 -38.99 -0.37 -1.47 16 29 C 0.11 0.87 11.17 -17.63 -0.20 0.67 16 30 N -0.46 -5.23 9.53 -9.89 -0.09 -5.33 16 31 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 32 H 0.04 0.54 6.29 -51.93 -0.33 0.22 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.36 8.36 3.63 -40.82 -0.15 8.21 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.07 1.19 6.29 -51.93 -0.33 0.87 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.92 6.56 -51.93 -0.34 0.58 16 39 H 0.41 5.51 5.90 -40.82 -0.24 5.27 16 40 H 0.15 1.63 5.92 -52.49 -0.31 1.32 16 41 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 45 H 0.13 0.55 6.29 -52.49 -0.33 0.22 16 46 H 0.14 0.60 6.33 -52.48 -0.33 0.27 16 47 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -33.84 382.86 -9.38 -43.22 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.97 Total: 11.99 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -4.70 Total: -6.98 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.15 Total: -61.97 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.72 Total: 17.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.84 -9.38 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275530642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.720 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds