Wall clock time and date at job start Tue Mar 31 2020 23:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 N 1.46493 * 109.47225 * 240.00321 * 2 1 3 5 5 C 1.36936 * 120.00314 * 84.99627 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.53004 * 109.47083 * 119.99972 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.52996 * 109.47111 * 65.00206 * 13 2 1 16 16 N 1.46498 * 109.47222 * 304.99637 * 13 2 1 17 17 C 1.34779 * 120.00254 * 205.00055 * 16 13 2 18 18 O 1.21518 * 119.99455 * 0.02562 * 17 16 13 19 19 C 1.48171 * 120.00345 * 180.02562 * 17 16 13 20 20 C 1.39098 * 119.67052 * 179.72493 * 19 17 16 21 21 C 1.39728 * 118.91708 * 179.77333 * 20 19 17 22 22 C 1.48361 * 120.87230 * 180.25983 * 21 20 19 23 23 C 1.39354 * 120.12316 * 359.96181 * 22 21 20 24 24 C 1.38016 * 119.87455 * 179.72191 * 23 22 21 25 25 C 1.38328 * 120.12354 * 0.55068 * 24 23 22 26 26 C 1.38321 * 120.24591 * 359.72399 * 25 24 23 27 27 C 1.38023 * 120.12407 * 359.97438 * 26 25 24 28 28 C 1.39738 * 118.25226 * 0.48563 * 21 20 19 29 29 C 1.38320 * 119.21647 * 359.75664 * 28 21 20 30 30 N 1.31580 * 121.02584 * 359.97438 * 29 28 21 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99754 * 1 2 3 33 33 H 1.09002 * 109.47269 * 59.99514 * 1 2 3 34 34 H 0.97000 * 120.00040 * 264.99759 * 4 2 1 35 35 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 36 36 H 1.09002 * 109.47378 * 59.99587 * 15 13 2 37 37 H 1.08996 * 109.47096 * 179.97438 * 15 13 2 38 38 H 1.09004 * 109.47050 * 299.99699 * 15 13 2 39 39 H 0.97003 * 119.99759 * 25.00138 * 16 13 2 40 40 H 1.07997 * 120.54262 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.06287 * 359.97438 * 23 22 21 42 42 H 1.07993 * 119.93971 * 180.27440 * 24 23 22 43 43 H 1.08002 * 119.87543 * 179.74201 * 25 24 23 44 44 H 1.07993 * 119.93939 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.06020 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.38873 * 179.72418 * 28 21 20 47 47 H 1.07995 * 119.48078 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1491 -0.0074 -2.3757 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6619 -3.5092 8 7 2.7318 -0.0066 -4.6443 9 14 3.0543 -2.4747 -3.4257 10 1 4.4886 -2.6177 -3.0685 11 1 2.2186 -3.1415 -2.3951 12 1 2.8080 -3.1059 -4.7471 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6353 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0913 -0.1937 3.6276 18 8 3.1490 -0.7869 3.7063 19 6 1.5003 0.4305 4.8345 20 6 2.1592 0.3283 6.0553 21 6 1.5901 0.9269 7.1823 22 6 2.2584 0.8498 8.5046 23 6 3.4697 0.1736 8.6376 24 6 4.0898 0.1098 9.8689 25 6 3.5057 0.7059 10.9721 26 6 2.3007 1.3735 10.8470 27 6 1.6747 1.4488 9.6192 28 6 0.3726 1.5961 7.0322 29 6 -0.2202 1.6473 5.7835 30 7 0.3447 1.0774 4.7407 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 2.2491 -1.6317 -1.1526 35 1 3.0510 -0.4649 -5.4374 36 1 2.0699 -2.6550 0.3002 37 1 1.9990 -2.7094 2.0777 38 1 0.5489 -2.2724 1.1421 39 1 0.6119 0.3702 2.3794 40 1 3.0973 -0.2015 6.1300 41 1 3.9242 -0.2963 7.7780 42 1 5.0307 -0.4101 9.9723 43 1 3.9924 0.6500 11.9346 44 1 1.8489 1.8367 11.7116 45 1 0.7342 1.9706 9.5226 46 1 -0.1002 2.0673 7.8813 47 1 -1.1610 2.1636 5.6625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275530642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:19 Heat of formation + Delta-G solvation = 21.117292 kcal Electronic energy + Delta-G solvation = -27822.910950 eV Core-core repulsion = 23970.058893 eV Total energy + Delta-G solvation = -3852.852057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.85773 -40.65023 -39.62714 -38.52537 -35.75876 -34.81374 -33.71074 -32.81794 -31.84140 -31.19749 -30.56024 -30.05817 -26.40267 -25.99951 -25.21306 -24.50484 -23.17253 -22.68387 -21.47714 -20.81426 -20.05759 -19.16632 -18.19806 -17.55620 -16.86699 -16.73993 -16.69207 -16.51294 -16.21125 -15.80651 -15.61596 -15.46717 -15.29898 -15.08935 -14.80265 -14.63936 -14.27977 -14.12591 -14.09075 -13.82340 -13.67355 -13.25073 -13.17111 -13.11294 -12.88041 -12.68784 -12.21909 -12.19552 -11.98626 -11.84756 -11.79382 -11.64685 -11.46208 -11.41621 -11.01265 -10.65344 -10.39005 -10.11228 -9.90763 -9.38734 -9.36130 -8.02224 -5.36224 -0.59343 -0.27981 0.45142 0.80800 1.37122 1.40463 1.46751 1.67027 1.93775 2.47882 2.69429 3.02466 3.05779 3.28895 3.34606 3.59279 3.64260 3.78430 3.87404 3.91872 3.99337 4.01691 4.05977 4.23620 4.25094 4.40660 4.52750 4.54153 4.55242 4.61523 4.65745 4.70150 4.79971 4.90304 4.93160 5.01136 5.04428 5.10982 5.11479 5.20626 5.39284 5.47748 5.54207 5.56829 5.57488 5.60158 5.77357 6.01754 6.20947 6.35359 6.75505 7.05371 7.08763 7.81133 8.00523 9.18942 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.002017 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.536388 B =13880.344145 C =14580.426524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 H 0.047 0.953 4 N -0.746 5.746 5 C -0.227 4.227 6 H 0.060 0.940 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.249 1.249 12 H -0.294 1.294 13 C 0.142 3.858 14 H 0.069 0.931 15 C -0.156 4.156 16 N -0.688 5.688 17 C 0.565 3.435 18 O -0.570 6.570 19 C 0.067 3.933 20 C -0.119 4.119 21 C -0.009 4.009 22 C -0.075 4.075 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.103 4.103 28 C -0.131 4.131 29 C 0.104 3.896 30 N -0.476 5.476 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.418 0.582 40 H 0.139 0.861 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.181 0.819 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 2.756 37.873 38.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 H 0.066 0.934 4 N -0.392 5.392 5 C -0.358 4.358 6 H 0.078 0.922 7 C -0.253 4.253 8 N -0.632 5.632 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.174 1.174 12 H -0.221 1.221 13 C 0.036 3.964 14 H 0.087 0.913 15 C -0.214 4.214 16 N -0.340 5.340 17 C 0.351 3.649 18 O -0.449 6.449 19 C -0.070 4.070 20 C -0.140 4.140 21 C -0.017 4.017 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.121 4.121 28 C -0.150 4.150 29 C -0.055 4.055 30 N -0.188 5.188 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.202 0.798 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.258 0.742 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.198 0.802 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.549 2.533 36.893 37.555 hybrid contribution 0.836 -0.898 -0.262 1.254 sum -5.713 1.634 36.631 37.110 Atomic orbital electron populations 1.22337 0.96238 1.02105 1.01208 1.20466 0.94048 0.94984 0.84365 0.93446 1.42767 1.80228 1.09598 1.06573 1.18999 1.35122 0.94544 0.87121 0.92196 1.25434 1.02331 1.02324 0.95227 1.69872 1.54755 1.37616 1.00971 0.85543 0.78601 0.81227 0.77257 1.20767 1.17381 1.22092 1.21068 0.98037 0.93445 0.83817 0.91295 1.22120 1.02839 0.94761 1.01695 1.45882 1.26126 1.55217 1.06824 1.18289 0.83743 0.79364 0.83513 1.90755 1.23537 1.44719 1.85887 1.20751 0.93572 0.99627 0.93006 1.22176 1.01058 0.98964 0.91765 1.19314 0.94740 0.95392 0.92267 1.18746 0.95749 1.01171 0.91856 1.21482 0.95060 0.98725 0.98711 1.21387 1.00803 1.00114 0.92434 1.21666 0.95813 0.96290 0.99425 1.21500 0.95551 0.99050 0.98024 1.21550 1.00659 0.98289 0.91588 1.22849 0.94035 0.97636 1.00523 1.23422 1.00231 0.94792 0.87052 1.67504 1.08644 1.07525 1.35145 0.92079 0.90829 0.93836 0.79780 0.93374 0.92162 0.92386 0.90522 0.74220 0.84288 0.86184 0.84375 0.83565 0.82931 0.82974 0.80152 0.78033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 9.01 71.98 0.65 -4.51 16 2 C 0.17 6.46 2.93 44.99 0.13 6.59 16 3 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 4 N -0.75 -34.86 4.84 -322.94 -1.56 -36.43 16 5 C -0.23 -12.95 10.41 84.03 0.87 -12.08 16 6 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 8 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 9 Si 0.95 46.04 27.74 68.60 1.90 47.95 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.25 -10.88 6.51 99.48 0.65 -10.23 16 12 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 13 C 0.14 4.80 2.62 44.99 0.12 4.92 16 14 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.16 -4.87 9.00 71.98 0.65 -4.22 16 16 N -0.69 -20.18 4.98 -445.09 -2.22 -22.39 16 17 C 0.57 17.63 7.78 86.88 0.68 18.31 16 18 O -0.57 -21.22 15.98 -3.77 -0.06 -21.28 16 19 C 0.07 1.71 6.75 41.85 0.28 1.99 16 20 C -0.12 -2.70 9.02 22.84 0.21 -2.49 16 21 C -0.01 -0.16 5.91 -19.86 -0.12 -0.27 16 22 C -0.08 -1.14 5.88 -20.04 -0.12 -1.25 16 23 C -0.12 -1.96 9.45 22.49 0.21 -1.75 16 24 C -0.13 -1.63 10.03 22.24 0.22 -1.40 16 25 C -0.11 -1.07 10.04 22.31 0.22 -0.85 16 26 C -0.12 -1.02 10.03 22.24 0.22 -0.79 16 27 C -0.10 -1.02 9.45 22.49 0.21 -0.81 16 28 C -0.13 -1.48 9.51 22.65 0.22 -1.26 16 29 C 0.10 1.39 11.17 84.75 0.95 2.33 16 30 N -0.48 -10.08 9.53 -185.19 -1.76 -11.84 16 31 H 0.06 1.88 6.56 -2.39 -0.02 1.87 16 32 H 0.07 1.87 6.29 -2.39 -0.02 1.86 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.37 16.54 3.63 -92.71 -0.34 16.21 16 35 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 36 H 0.06 1.99 6.29 -2.39 -0.02 1.97 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.14 6.56 -2.39 -0.02 2.13 16 39 H 0.42 10.74 5.90 -92.71 -0.55 10.19 16 40 H 0.14 3.32 5.92 -2.91 -0.02 3.30 16 41 H 0.12 2.03 6.30 -2.91 -0.02 2.01 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.15 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 45 H 0.15 0.61 6.29 -2.91 -0.02 0.59 16 46 H 0.18 0.55 6.33 -2.91 -0.02 0.53 16 47 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -76.69 382.86 2.76 -73.93 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.08 Total: 33.88 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.07 Total: -0.75 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -5.24 Total: -133.73 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.95 kcal Total: -76.69 2.76 -73.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275530642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.046 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds