Wall clock time and date at job start Tue Mar 31 2020 23:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 2 1 15 15 C 1.52992 * 109.47482 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47188 * 59.99892 * 13 2 1 17 17 C 1.34774 * 120.00383 * 204.99951 * 16 13 2 18 18 O 1.21517 * 120.00110 * 0.02562 * 17 16 13 19 19 C 1.48183 * 120.00127 * 180.02562 * 17 16 13 20 20 C 1.39100 * 119.66515 * 179.72612 * 19 17 16 21 21 C 1.39732 * 118.91220 * 179.77638 * 20 19 17 22 22 C 1.48364 * 120.87030 * 180.26080 * 21 20 19 23 23 C 1.39361 * 120.12456 * 359.96071 * 22 21 20 24 24 C 1.38013 * 119.87358 * 179.72181 * 23 22 21 25 25 C 1.38327 * 120.12413 * 0.57337 * 24 23 22 26 26 C 1.38321 * 120.24657 * 359.68475 * 25 24 23 27 27 C 1.38010 * 120.12308 * 0.03449 * 26 25 24 28 28 C 1.39728 * 118.25504 * 0.49252 * 21 20 19 29 29 C 1.38315 * 119.21716 * 359.74778 * 28 21 20 30 30 N 1.31579 * 121.02533 * 0.02562 * 29 28 21 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 34 34 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 35 35 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47103 * 300.00247 * 15 13 2 37 37 H 1.09001 * 109.47066 * 60.00169 * 15 13 2 38 38 H 1.08996 * 109.47747 * 179.97438 * 15 13 2 39 39 H 0.97004 * 119.99924 * 25.00373 * 16 13 2 40 40 H 1.07998 * 120.54665 * 0.02562 * 20 19 17 41 41 H 1.07995 * 120.05654 * 359.97438 * 23 22 21 42 42 H 1.08000 * 119.93351 * 180.29847 * 24 23 22 43 43 H 1.07998 * 119.87349 * 179.69738 * 25 24 23 44 44 H 1.08006 * 119.93954 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.06555 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.39281 * 179.73186 * 28 21 20 47 47 H 1.07999 * 119.49047 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2492 15 6 3.5699 -0.7219 -1.2490 16 7 1.5516 -0.0307 -2.4454 17 6 1.4229 -0.7031 -3.6063 18 8 1.7114 -1.8822 -3.6608 19 6 0.9295 -0.0044 -4.8164 20 6 0.8047 -0.7037 -6.0123 21 6 0.3334 -0.0305 -7.1425 22 6 0.1779 -0.7354 -8.4387 23 6 0.5036 -2.0863 -8.5437 24 6 0.3516 -2.7383 -9.7506 25 6 -0.1118 -2.0505 -10.8576 26 6 -0.4315 -0.7083 -10.7605 27 6 -0.2889 -0.0476 -9.5572 28 6 0.0170 1.3251 -7.0210 29 6 0.1745 1.9480 -5.7961 30 7 0.6166 1.2841 -4.7496 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.2493 -2.3958 4.2417 36 1 3.9336 0.3056 -1.2488 37 1 3.9329 -1.2360 -0.3590 38 1 3.9333 -1.2361 -2.1387 39 1 1.3210 0.9105 -2.4018 40 1 1.0640 -1.7507 -6.0656 41 1 0.8704 -2.6229 -7.6812 42 1 0.5991 -3.7864 -9.8318 43 1 -0.2246 -2.5635 -11.8013 44 1 -0.7933 -0.1762 -11.6280 45 1 -0.5391 1.0003 -9.4823 46 1 -0.3460 1.8800 -7.8735 47 1 -0.0691 2.9954 -5.6971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275530643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:23 Heat of formation + Delta-G solvation = 14.503223 kcal Electronic energy + Delta-G solvation = -27734.374039 eV Core-core repulsion = 23881.235174 eV Total energy + Delta-G solvation = -3853.138864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83335 -40.58917 -39.59455 -38.26298 -35.68459 -34.79571 -33.55033 -32.77222 -31.79500 -30.93729 -30.50933 -30.15199 -26.19621 -25.91300 -25.19124 -24.27569 -23.08109 -22.67004 -21.56373 -21.32800 -19.47112 -19.10147 -18.18015 -17.55813 -16.93698 -16.73982 -16.57132 -16.33475 -16.23603 -15.57139 -15.48635 -15.27102 -15.16356 -14.99550 -14.84462 -14.57487 -14.27998 -14.11893 -14.09835 -13.78565 -13.47816 -13.22796 -13.10987 -12.92928 -12.70811 -12.61360 -12.28804 -12.21216 -12.19937 -11.84622 -11.74469 -11.51116 -11.45335 -11.38390 -10.96940 -10.63619 -10.37367 -10.08923 -9.90340 -9.38076 -9.01431 -7.90821 -5.20137 -0.58272 -0.26959 0.45637 0.81652 1.49478 1.52363 1.58163 1.69397 1.95811 2.59688 2.70545 3.03266 3.07870 3.35914 3.42759 3.62020 3.76149 3.88176 3.92807 3.99247 4.03777 4.07152 4.17536 4.25567 4.32158 4.42044 4.53419 4.55738 4.57072 4.66379 4.71178 4.75646 4.86336 4.92011 5.00125 5.03206 5.05428 5.11481 5.14804 5.28275 5.44902 5.47860 5.49883 5.54793 5.56891 5.57944 5.61045 6.02288 6.29316 6.38398 6.77385 7.10681 7.36017 8.08280 8.32962 9.32331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.001898 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.741619 B =14747.397452 C =15349.271054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.169 3.831 3 H 0.061 0.939 4 N -0.729 5.729 5 C -0.235 4.235 6 H 0.080 0.920 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.277 1.277 13 C 0.147 3.853 14 H 0.064 0.936 15 C -0.143 4.143 16 N -0.684 5.684 17 C 0.565 3.435 18 O -0.572 6.572 19 C 0.068 3.932 20 C -0.119 4.119 21 C -0.009 4.009 22 C -0.075 4.075 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.103 4.103 28 C -0.131 4.131 29 C 0.104 3.896 30 N -0.475 5.475 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.418 0.582 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.182 0.818 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 8.468 -33.787 35.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.079 0.921 4 N -0.369 5.369 5 C -0.367 4.367 6 H 0.098 0.902 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.203 1.203 13 C 0.042 3.958 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.335 5.335 17 C 0.351 3.649 18 O -0.451 6.451 19 C -0.068 4.068 20 C -0.140 4.140 21 C -0.017 4.017 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.121 4.121 28 C -0.150 4.150 29 C -0.055 4.055 30 N -0.187 5.187 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.204 0.796 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.199 0.801 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.304 8.191 -32.819 34.830 hybrid contribution 0.250 -0.669 0.727 1.019 sum -8.054 7.523 -32.091 33.931 Atomic orbital electron populations 1.22289 0.97580 1.00550 1.00948 1.20523 0.92922 0.95577 0.84950 0.92144 1.42435 1.78467 1.10216 1.05784 1.19557 1.34927 0.94281 0.87886 0.90224 1.25548 1.03005 0.96857 1.01433 1.69827 1.52527 1.10243 1.29424 0.85219 0.77898 0.77257 0.79405 1.20496 1.22586 1.20331 1.21023 0.94402 0.96466 0.83914 0.91800 1.21928 0.94788 1.02203 1.01182 1.45716 1.64720 1.14869 1.08209 1.18283 0.77421 0.85780 0.83414 1.90758 1.52344 1.16749 1.85294 1.20743 1.01504 0.91380 0.93193 1.22176 0.98130 1.01791 0.91949 1.19312 0.95780 0.94345 0.92288 1.18749 1.02656 0.93899 0.92192 1.21483 0.99486 0.94207 0.98852 1.21385 0.99674 1.01082 0.92603 1.21663 0.97196 0.95099 0.99219 1.21500 0.99476 0.94900 0.98228 1.21549 0.97755 1.01154 0.91612 1.22844 0.98076 0.93461 1.00668 1.23427 0.93371 1.01642 0.87051 1.67504 1.10220 1.06903 1.34084 0.93530 0.91400 0.94765 0.79558 0.94175 0.91817 0.92447 0.93270 0.74417 0.84413 0.86278 0.84404 0.83540 0.82887 0.82941 0.80118 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.33 71.98 0.67 -4.93 16 2 C 0.17 6.69 2.52 44.99 0.11 6.80 16 3 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 4 N -0.73 -36.56 4.43 -322.94 -1.43 -37.99 16 5 C -0.23 -12.85 9.93 84.03 0.83 -12.01 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 8 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 9 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.15 5.40 2.20 44.99 0.10 5.50 16 14 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.14 -5.27 9.33 71.98 0.67 -4.59 16 16 N -0.68 -21.17 4.37 -445.10 -1.95 -23.12 16 17 C 0.57 18.49 7.78 86.89 0.68 19.17 16 18 O -0.57 -22.48 15.98 -3.77 -0.06 -22.54 16 19 C 0.07 1.81 6.75 41.85 0.28 2.09 16 20 C -0.12 -2.83 9.02 22.84 0.21 -2.63 16 21 C -0.01 -0.17 5.91 -19.86 -0.12 -0.28 16 22 C -0.07 -1.18 5.88 -20.04 -0.12 -1.30 16 23 C -0.12 -2.06 9.45 22.49 0.21 -1.84 16 24 C -0.13 -1.71 10.03 22.24 0.22 -1.48 16 25 C -0.11 -1.12 10.04 22.31 0.22 -0.90 16 26 C -0.12 -1.06 10.03 22.24 0.22 -0.84 16 27 C -0.10 -1.07 9.45 22.48 0.21 -0.85 16 28 C -0.13 -1.54 9.51 22.65 0.22 -1.33 16 29 C 0.10 1.44 11.17 84.75 0.95 2.39 16 30 N -0.47 -10.38 9.53 -185.18 -1.76 -12.14 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.04 7.45 -2.39 -0.02 2.03 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.37 20.49 7.58 -92.71 -0.70 19.78 16 35 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.40 7.44 -2.39 -0.02 2.39 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.42 11.24 7.71 -92.71 -0.72 10.52 16 40 H 0.14 3.46 5.92 -2.91 -0.02 3.45 16 41 H 0.12 2.13 6.30 -2.91 -0.02 2.12 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.15 0.46 8.06 -2.91 -0.02 0.43 16 45 H 0.15 0.66 6.29 -2.91 -0.02 0.64 16 46 H 0.18 0.62 6.33 -2.91 -0.02 0.60 16 47 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -73.14 393.68 2.74 -70.40 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.41 Total: 37.62 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.04 Total: -0.95 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -4.86 Total: -132.77 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.14 2.74 -70.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275530643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.899 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds