Wall clock time and date at job start Tue Mar 31 2020 23:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 120.00013 * 2 1 3 5 5 C 1.34777 * 120.00075 * 274.99922 * 4 2 1 6 6 O 1.21517 * 119.99948 * 359.97438 * 5 4 2 7 7 C 1.48174 * 120.00094 * 179.97438 * 5 4 2 8 8 C 1.39100 * 119.66775 * 179.97438 * 7 5 4 9 9 C 1.39721 * 118.91586 * 179.97438 * 8 7 5 10 10 C 1.48379 * 120.87273 * 179.97438 * 9 8 7 11 11 C 1.39347 * 120.11946 * 359.72354 * 10 9 8 12 12 C 1.38012 * 119.87575 * 179.78687 * 11 10 9 13 13 C 1.38329 * 120.12361 * 0.49344 * 12 11 10 14 14 C 1.38325 * 120.23983 * 359.73908 * 13 12 11 15 15 C 1.38012 * 120.12671 * 0.02562 * 14 13 12 16 16 C 1.39734 * 118.25736 * 0.02562 * 9 8 7 17 17 C 1.38318 * 119.21453 * 359.97438 * 16 9 8 18 18 N 1.31583 * 121.02370 * 359.74556 * 17 16 9 19 19 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 20 20 H 1.09002 * 109.47398 * 300.00496 * 19 2 1 21 21 C 1.52997 * 109.47060 * 180.02562 * 19 2 1 22 22 N 1.46500 * 109.47023 * 60.00568 * 19 2 1 23 23 C 1.36933 * 119.99983 * 204.99625 * 22 19 2 24 24 H 1.08002 * 120.00189 * 0.02562 * 23 22 19 25 25 C 1.38812 * 120.00422 * 179.97438 * 23 22 19 26 26 N 1.31623 * 119.99438 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00488 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46869 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47383 * 120.00043 * 27 25 23 30 30 H 1.48500 * 109.47270 * 240.00058 * 27 25 23 31 31 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 32 32 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 34 34 H 0.97006 * 120.00223 * 94.99586 * 4 2 1 35 35 H 1.07999 * 120.54463 * 0.02562 * 8 7 5 36 36 H 1.08010 * 120.06399 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.93966 * 180.24868 * 12 11 10 38 38 H 1.07992 * 119.88099 * 179.76115 * 13 12 11 39 39 H 1.08000 * 119.93272 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.06286 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.38900 * 179.97438 * 16 9 8 42 42 H 1.07991 * 119.48627 * 179.97438 * 17 16 9 43 43 H 1.09002 * 109.47153 * 300.00319 * 21 19 2 44 44 H 1.08998 * 109.47533 * 59.99948 * 21 19 2 45 45 H 1.08996 * 109.47853 * 180.02562 * 21 19 2 46 46 H 0.96997 * 120.00274 * 24.99518 * 22 19 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8585 1.1609 2.4116 7 6 2.6403 -0.7169 3.5672 8 6 2.7709 -0.0162 4.7616 9 6 3.2371 -0.6906 5.8931 10 6 3.3936 0.0146 7.1892 11 6 3.0804 1.3686 7.2908 12 6 3.2236 2.0184 8.4999 13 6 3.6869 1.3307 9.6071 14 6 4.0039 -0.0123 9.5106 15 6 3.8599 -0.6734 8.3077 16 6 3.5530 -2.0463 5.7717 17 6 3.3946 -2.6695 4.5471 18 7 2.9479 -2.0068 3.5017 19 6 2.0399 -0.7214 -1.2492 20 1 1.6765 -1.7490 -1.2492 21 6 3.5699 -0.7219 -1.2489 22 7 1.5517 -0.0307 -2.4454 23 6 1.4209 -0.7138 -3.6249 24 1 1.6773 -1.7619 -3.6734 25 6 0.9578 -0.0597 -4.7583 26 7 0.6439 1.2172 -4.6989 27 14 0.7787 -0.9917 -6.3672 28 1 1.1938 -2.4038 -6.1700 29 1 -0.6384 -0.9488 -6.8090 30 1 1.6390 -0.3633 -7.4017 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6319 1.1527 35 1 2.5155 1.0319 4.8139 36 1 2.7232 1.9078 6.4258 37 1 2.9774 3.0669 8.5809 38 1 3.8012 1.8440 10.5503 39 1 4.3648 -0.5445 10.3783 40 1 4.1073 -1.7220 8.2336 41 1 3.9165 -2.6010 6.6241 42 1 3.6378 -3.7170 4.4482 43 1 3.9337 0.3056 -1.2487 44 1 3.9330 -1.2359 -0.3589 45 1 3.9333 -1.2354 -2.1390 46 1 1.3210 0.9104 -2.4019 47 1 0.3206 1.6745 -5.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275530644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:27 Heat of formation + Delta-G solvation = 33.797889 kcal Electronic energy + Delta-G solvation = -27733.740207 eV Core-core repulsion = 23881.438022 eV Total energy + Delta-G solvation = -3852.302185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96917 -39.61899 -38.82123 -36.69384 -34.29256 -33.76828 -32.16507 -31.65860 -31.10914 -30.03414 -29.35266 -28.34908 -25.25417 -24.51104 -23.96233 -23.12411 -22.16301 -21.97930 -20.25644 -19.99983 -18.34405 -17.44219 -17.31452 -16.68910 -16.10127 -15.70059 -15.53983 -15.16769 -14.91070 -14.62482 -14.52752 -14.19975 -13.95052 -13.65815 -13.59233 -13.55882 -13.33036 -13.13736 -12.97403 -12.46479 -12.38237 -11.82241 -11.73494 -11.65826 -11.32887 -11.15011 -10.93964 -10.82192 -10.79215 -10.66247 -10.28708 -10.16143 -9.88418 -9.76206 -9.59663 -9.51412 -9.41214 -8.99387 -8.80821 -8.71954 -6.96694 -5.75853 -3.05161 0.09832 0.52348 0.94569 1.43534 2.71891 3.16612 3.37532 3.44153 3.49915 3.51997 3.77109 3.91137 4.05504 4.25962 4.49058 4.53478 4.60099 4.66042 4.67793 4.72789 4.94311 5.09014 5.14404 5.27003 5.33070 5.40491 5.51862 5.58069 5.60157 5.64787 5.71993 5.78970 5.93320 5.98902 6.05539 6.14106 6.15406 6.23810 6.26241 6.42591 6.46310 6.48914 6.57966 6.66409 6.84782 6.96408 7.06716 7.41927 7.71332 7.77693 8.32691 8.41965 9.53316 10.08766 10.44121 11.46625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.001898 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.894618 B =14747.155520 C =15348.411820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.087 0.913 4 N -0.693 5.693 5 C 0.567 3.433 6 O -0.535 6.535 7 C 0.092 3.908 8 C -0.107 4.107 9 C -0.007 4.007 10 C -0.054 4.054 11 C -0.100 4.100 12 C -0.118 4.118 13 C -0.112 4.112 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.150 4.150 17 C 0.104 3.896 18 N -0.459 5.459 19 C 0.169 3.831 20 H 0.052 0.948 21 C -0.165 4.165 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.408 0.592 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.055 0.945 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -5.368 30.969 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.105 0.895 4 N -0.343 5.343 5 C 0.350 3.650 6 O -0.412 6.412 7 C -0.046 4.046 8 C -0.128 4.128 9 C -0.015 4.015 10 C -0.055 4.055 11 C -0.118 4.118 12 C -0.136 4.136 13 C -0.130 4.130 14 C -0.139 4.139 15 C -0.121 4.121 16 C -0.170 4.170 17 C -0.055 4.055 18 N -0.171 5.171 19 C 0.058 3.942 20 H 0.070 0.930 21 C -0.225 4.225 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.168 0.832 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.183 0.817 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.884 -5.057 29.976 31.170 hybrid contribution 0.126 -0.239 -0.093 0.286 sum 7.010 -5.296 29.884 31.148 Atomic orbital electron populations 1.22055 0.94723 1.01906 1.02381 1.21431 0.94601 0.97628 0.83464 0.89537 1.45937 1.64713 1.14616 1.09038 1.17813 0.78356 0.86111 0.82696 1.90787 1.50770 1.15043 1.84611 1.21225 0.98827 0.90318 0.94222 1.22189 0.97245 1.02036 0.91333 1.19113 0.96355 0.93380 0.92618 1.18650 1.01179 0.93711 0.91915 1.21378 0.98493 0.93573 0.98401 1.21164 0.99431 1.00331 0.92629 1.21308 0.98320 0.94642 0.98774 1.21113 1.00337 0.94868 0.97563 1.21230 0.98686 0.99983 0.92179 1.22397 1.00458 0.94413 0.99711 1.22733 0.94803 1.00284 0.87633 1.67558 1.09390 1.07755 1.32347 1.20385 0.92167 0.95627 0.85981 0.93028 1.22444 0.98984 1.01083 0.99976 1.42294 1.78200 1.10680 1.04811 1.19247 1.36547 0.93908 0.87074 0.91066 1.24742 1.02134 0.95991 0.98053 1.69676 1.50802 1.08640 1.28787 0.86122 0.77266 0.78767 0.84047 1.20588 1.21913 1.21941 0.89955 0.92964 0.93445 0.75586 0.83199 0.85154 0.85448 0.85774 0.85620 0.85515 0.84122 0.81750 0.93465 0.94405 0.92611 0.78055 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.33 37.16 0.35 -2.38 16 2 C 0.13 2.38 2.21 -67.93 -0.15 2.23 16 3 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 4 N -0.69 -10.66 4.37 -54.65 -0.24 -10.90 16 5 C 0.57 8.97 7.78 -12.18 -0.09 8.88 16 6 O -0.54 -9.92 15.98 5.35 0.09 -9.83 16 7 C 0.09 1.21 6.75 -83.06 -0.56 0.65 16 8 C -0.11 -1.24 9.02 -38.71 -0.35 -1.59 16 9 C -0.01 -0.06 5.91 -104.61 -0.62 -0.68 16 10 C -0.05 -0.46 5.88 -104.90 -0.62 -1.08 16 11 C -0.10 -0.83 9.45 -39.25 -0.37 -1.20 16 12 C -0.12 -0.81 10.03 -39.63 -0.40 -1.21 16 13 C -0.11 -0.68 10.04 -39.52 -0.40 -1.08 16 14 C -0.12 -0.72 10.03 -39.63 -0.40 -1.12 16 15 C -0.10 -0.69 9.45 -39.25 -0.37 -1.06 16 16 C -0.15 -1.15 9.51 -38.99 -0.37 -1.52 16 17 C 0.10 0.89 11.17 -17.63 -0.20 0.70 16 18 N -0.46 -5.38 9.53 -9.89 -0.09 -5.47 16 19 C 0.17 3.33 2.52 -67.93 -0.17 3.16 16 20 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 21 C -0.16 -3.03 9.33 37.16 0.35 -2.69 16 22 N -0.72 -17.64 4.43 -53.43 -0.24 -17.88 16 23 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 27 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 31 H 0.08 1.65 7.45 -51.93 -0.39 1.26 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.41 5.67 7.71 -40.82 -0.31 5.36 16 35 H 0.15 1.69 5.92 -52.49 -0.31 1.38 16 36 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.58 6.29 -52.49 -0.33 0.25 16 41 H 0.14 0.63 6.33 -52.49 -0.33 0.30 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.59 7.44 -51.93 -0.39 0.21 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.39 10.17 7.58 -40.82 -0.31 9.86 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -32.66 393.68 -9.91 -42.57 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.44 Total: 12.58 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -4.61 Total: -7.06 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.15 Total: -61.47 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.66 -9.91 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275530644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.365 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds