Wall clock time and date at job start Tue Mar 31 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 120.00013 * 2 1 3 5 5 C 1.34777 * 120.00075 * 274.99922 * 4 2 1 6 6 O 1.21517 * 119.99948 * 359.97438 * 5 4 2 7 7 C 1.48174 * 120.00094 * 179.97438 * 5 4 2 8 8 C 1.39100 * 119.66775 * 179.97438 * 7 5 4 9 9 C 1.39721 * 118.91586 * 179.97438 * 8 7 5 10 10 C 1.48379 * 120.87273 * 179.97438 * 9 8 7 11 11 C 1.39347 * 120.11946 * 359.72354 * 10 9 8 12 12 C 1.38012 * 119.87575 * 179.78687 * 11 10 9 13 13 C 1.38329 * 120.12361 * 0.49344 * 12 11 10 14 14 C 1.38325 * 120.23983 * 359.73908 * 13 12 11 15 15 C 1.38012 * 120.12671 * 0.02562 * 14 13 12 16 16 C 1.39734 * 118.25736 * 0.02562 * 9 8 7 17 17 C 1.38318 * 119.21453 * 359.97438 * 16 9 8 18 18 N 1.31583 * 121.02370 * 359.74556 * 17 16 9 19 19 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 20 20 H 1.09002 * 109.47398 * 300.00496 * 19 2 1 21 21 C 1.52997 * 109.47060 * 180.02562 * 19 2 1 22 22 N 1.46500 * 109.47023 * 60.00568 * 19 2 1 23 23 C 1.36933 * 119.99983 * 204.99625 * 22 19 2 24 24 H 1.08002 * 120.00189 * 0.02562 * 23 22 19 25 25 C 1.38812 * 120.00422 * 179.97438 * 23 22 19 26 26 N 1.31623 * 119.99438 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00488 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46869 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47383 * 120.00043 * 27 25 23 30 30 H 1.48500 * 109.47270 * 240.00058 * 27 25 23 31 31 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 32 32 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 34 34 H 0.97006 * 120.00223 * 94.99586 * 4 2 1 35 35 H 1.07999 * 120.54463 * 0.02562 * 8 7 5 36 36 H 1.08010 * 120.06399 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.93966 * 180.24868 * 12 11 10 38 38 H 1.07992 * 119.88099 * 179.76115 * 13 12 11 39 39 H 1.08000 * 119.93272 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.06286 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.38900 * 179.97438 * 16 9 8 42 42 H 1.07991 * 119.48627 * 179.97438 * 17 16 9 43 43 H 1.09002 * 109.47153 * 300.00319 * 21 19 2 44 44 H 1.08998 * 109.47533 * 59.99948 * 21 19 2 45 45 H 1.08996 * 109.47853 * 180.02562 * 21 19 2 46 46 H 0.96997 * 120.00274 * 24.99518 * 22 19 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8585 1.1609 2.4116 7 6 2.6403 -0.7169 3.5672 8 6 2.7709 -0.0162 4.7616 9 6 3.2371 -0.6906 5.8931 10 6 3.3936 0.0146 7.1892 11 6 3.0804 1.3686 7.2908 12 6 3.2236 2.0184 8.4999 13 6 3.6869 1.3307 9.6071 14 6 4.0039 -0.0123 9.5106 15 6 3.8599 -0.6734 8.3077 16 6 3.5530 -2.0463 5.7717 17 6 3.3946 -2.6695 4.5471 18 7 2.9479 -2.0068 3.5017 19 6 2.0399 -0.7214 -1.2492 20 1 1.6765 -1.7490 -1.2492 21 6 3.5699 -0.7219 -1.2489 22 7 1.5517 -0.0307 -2.4454 23 6 1.4209 -0.7138 -3.6249 24 1 1.6773 -1.7619 -3.6734 25 6 0.9578 -0.0597 -4.7583 26 7 0.6439 1.2172 -4.6989 27 14 0.7787 -0.9917 -6.3672 28 1 1.1938 -2.4038 -6.1700 29 1 -0.6384 -0.9488 -6.8090 30 1 1.6390 -0.3633 -7.4017 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6319 1.1527 35 1 2.5155 1.0319 4.8139 36 1 2.7232 1.9078 6.4258 37 1 2.9774 3.0669 8.5809 38 1 3.8012 1.8440 10.5503 39 1 4.3648 -0.5445 10.3783 40 1 4.1073 -1.7220 8.2336 41 1 3.9165 -2.6010 6.6241 42 1 3.6378 -3.7170 4.4482 43 1 3.9337 0.3056 -1.2487 44 1 3.9330 -1.2359 -0.3589 45 1 3.9333 -1.2354 -2.1390 46 1 1.3210 0.9104 -2.4019 47 1 0.3206 1.6745 -5.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275530644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:26 Heat of formation + Delta-G solvation = 14.272051 kcal Electronic energy + Delta-G solvation = -27734.586910 eV Core-core repulsion = 23881.438022 eV Total energy + Delta-G solvation = -3853.148889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83348 -40.58935 -39.59492 -38.26455 -35.68774 -34.79569 -33.55175 -32.77264 -31.79511 -30.93753 -30.50958 -30.15448 -26.19712 -25.91975 -25.19078 -24.27684 -23.08228 -22.67005 -21.56460 -21.32888 -19.47436 -19.10371 -18.18040 -17.55887 -16.94184 -16.73989 -16.57228 -16.33523 -16.23253 -15.57789 -15.48582 -15.26569 -15.16392 -14.99644 -14.85223 -14.57445 -14.28012 -14.11897 -14.10169 -13.78600 -13.47795 -13.22976 -13.10980 -12.95221 -12.75465 -12.62037 -12.29668 -12.21206 -12.09080 -11.84654 -11.74934 -11.50932 -11.45304 -11.38388 -10.99870 -10.63648 -10.37374 -10.08933 -9.90339 -9.38127 -9.01744 -7.91537 -5.20737 -0.58260 -0.26938 0.45632 0.81639 1.49502 1.49895 1.59866 1.69395 1.95761 2.59175 2.70546 3.03266 3.07876 3.35854 3.42507 3.62036 3.76097 3.88207 3.92811 3.99066 4.03715 4.07122 4.17488 4.25585 4.32117 4.42052 4.53427 4.55747 4.57058 4.66396 4.71184 4.75651 4.86333 4.91996 5.00146 5.03209 5.05423 5.11466 5.14786 5.28278 5.44904 5.47881 5.49964 5.54825 5.57112 5.57943 5.61061 6.02286 6.29023 6.38386 6.77369 7.10690 7.35639 8.07832 8.32389 9.32082 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.001898 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.894618 B =14747.155520 C =15348.411820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.147 3.853 3 H 0.064 0.936 4 N -0.684 5.684 5 C 0.565 3.435 6 O -0.572 6.572 7 C 0.068 3.932 8 C -0.119 4.119 9 C -0.009 4.009 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.131 4.131 17 C 0.104 3.896 18 N -0.475 5.475 19 C 0.169 3.831 20 H 0.061 0.939 21 C -0.154 4.154 22 N -0.729 5.729 23 C -0.232 4.232 24 H 0.081 0.919 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.972 3.028 28 H -0.264 1.264 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.418 0.582 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.182 0.818 42 H 0.203 0.797 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.372 0.628 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.704 -8.535 33.855 35.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.042 3.958 3 H 0.082 0.918 4 N -0.335 5.335 5 C 0.351 3.649 6 O -0.451 6.451 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.017 4.017 10 C -0.075 4.075 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.132 4.132 14 C -0.141 4.141 15 C -0.121 4.121 16 C -0.150 4.150 17 C -0.055 4.055 18 N -0.187 5.187 19 C 0.060 3.940 20 H 0.079 0.921 21 C -0.214 4.214 22 N -0.369 5.369 23 C -0.364 4.364 24 H 0.098 0.902 25 C -0.269 4.269 26 N -0.621 5.621 27 Si 0.802 3.198 28 H -0.188 1.188 29 H -0.223 1.223 30 H -0.225 1.225 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.256 0.744 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.199 0.801 42 H 0.220 0.780 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.204 0.796 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.373 -8.278 32.898 34.941 hybrid contribution -0.260 0.706 -0.742 1.057 sum 8.113 -7.572 32.155 34.017 Atomic orbital electron populations 1.21931 0.94788 1.02213 1.01175 1.21025 0.94400 0.96467 0.83915 0.91795 1.45719 1.64727 1.14866 1.08206 1.18281 0.77421 0.85780 0.83416 1.90758 1.52335 1.16753 1.85300 1.20741 1.01520 0.91340 0.93216 1.22173 0.98139 1.01793 0.91941 1.19314 0.95807 0.94341 0.92266 1.18747 1.02684 0.93851 0.92210 1.21481 0.99536 0.94181 0.98832 1.21386 0.99673 1.01114 0.92571 1.21665 0.97180 0.95099 0.99237 1.21501 0.99489 0.94891 0.98225 1.21546 0.97713 1.01179 0.91630 1.22845 0.98066 0.93468 1.00668 1.23427 0.93333 1.01656 0.87073 1.67506 1.10238 1.06924 1.34041 1.20525 0.92936 0.95579 0.84937 0.92130 1.22289 0.97560 1.00563 1.00967 1.42452 1.78428 1.10234 1.05806 1.19634 1.34619 0.94285 0.87835 0.90157 1.25545 1.03068 0.96864 1.01436 1.69840 1.52693 1.10284 1.29264 0.85085 0.76589 0.78288 0.79862 1.18787 1.22333 1.22472 0.92447 0.91802 0.93281 0.74413 0.84415 0.86276 0.84404 0.83541 0.82889 0.82939 0.80120 0.77997 0.94764 0.91389 0.93503 0.79559 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.33 71.98 0.67 -4.59 16 2 C 0.15 5.39 2.21 44.99 0.10 5.49 16 3 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 4 N -0.68 -21.14 4.37 -445.10 -1.95 -23.09 16 5 C 0.57 18.47 7.78 86.88 0.68 19.15 16 6 O -0.57 -22.47 15.98 -3.77 -0.06 -22.53 16 7 C 0.07 1.81 6.75 41.85 0.28 2.09 16 8 C -0.12 -2.83 9.02 22.84 0.21 -2.63 16 9 C -0.01 -0.17 5.91 -19.86 -0.12 -0.28 16 10 C -0.07 -1.18 5.88 -20.04 -0.12 -1.29 16 11 C -0.12 -2.06 9.45 22.48 0.21 -1.84 16 12 C -0.13 -1.71 10.03 22.24 0.22 -1.48 16 13 C -0.11 -1.12 10.04 22.31 0.22 -0.90 16 14 C -0.12 -1.06 10.03 22.24 0.22 -0.84 16 15 C -0.10 -1.06 9.45 22.48 0.21 -0.85 16 16 C -0.13 -1.54 9.51 22.65 0.22 -1.33 16 17 C 0.10 1.44 11.17 84.75 0.95 2.38 16 18 N -0.47 -10.36 9.53 -185.19 -1.76 -12.12 16 19 C 0.17 6.67 2.52 44.99 0.11 6.78 16 20 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 21 C -0.15 -5.59 9.33 71.98 0.67 -4.92 16 22 N -0.73 -36.52 4.43 -322.94 -1.43 -37.95 16 23 C -0.23 -12.68 9.93 84.03 0.83 -11.84 16 24 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 26 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 27 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 31 H 0.06 2.40 7.45 -2.39 -0.02 2.38 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 11.21 7.71 -92.70 -0.71 10.50 16 35 H 0.14 3.46 5.92 -2.91 -0.02 3.44 16 36 H 0.12 2.13 6.30 -2.91 -0.02 2.11 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.15 0.66 6.29 -2.91 -0.02 0.64 16 41 H 0.18 0.62 6.33 -2.91 -0.02 0.60 16 42 H 0.20 1.15 8.06 -2.92 -0.02 1.13 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.37 20.47 7.58 -92.71 -0.70 19.76 16 47 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -73.26 393.68 2.74 -70.52 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.41 Total: 37.30 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.04 Total: -0.85 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -4.86 Total: -132.73 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.53 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.26 2.74 -70.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275530644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.789 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds