Wall clock time and date at job start Tue Mar 31 2020 23:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47313 * 179.97438 * 7 6 4 9 9 C 1.38250 * 120.01816 * 90.00245 * 8 7 6 10 10 C 1.38149 * 119.95970 * 180.02562 * 9 8 7 11 11 C 1.38442 * 120.10441 * 359.97175 * 10 9 8 12 12 C 1.38067 * 119.93513 * 0.02562 * 11 10 9 13 13 C 1.38145 * 120.01858 * 269.72168 * 8 7 6 14 14 C 1.50776 * 108.86403 * 180.02562 * 12 11 10 15 15 N 1.46636 * 107.69893 * 359.97438 * 14 12 11 16 16 C 1.36938 * 126.56428 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99755 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00298 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99859 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47320 * 89.99671 * 20 18 16 22 22 H 1.48506 * 109.47275 * 209.99751 * 20 18 16 23 23 H 1.48504 * 109.46993 * 329.99489 * 20 18 16 24 24 C 1.46633 * 106.87315 * 0.02562 * 15 14 12 25 25 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 26 26 C 1.36340 * 125.63951 * 299.70058 * 25 2 1 27 27 C 1.34855 * 108.21945 * 179.82709 * 26 25 2 28 28 C 1.40888 * 107.41813 * 0.42370 * 27 26 25 29 29 C 1.34850 * 107.41622 * 359.73240 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46875 * 299.99676 * 7 6 4 35 35 H 1.09000 * 109.47024 * 59.99522 * 7 6 4 36 36 H 1.08000 * 120.02191 * 359.97309 * 9 8 7 37 37 H 1.08002 * 119.94172 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.94998 * 0.02562 * 13 8 7 39 39 H 1.08992 * 109.81203 * 119.54557 * 14 12 11 40 40 H 1.09001 * 109.81589 * 240.45547 * 14 12 11 41 41 H 0.97001 * 120.00288 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.81448 * 240.44788 * 24 15 14 43 43 H 1.09002 * 109.81206 * 119.55141 * 24 15 14 44 44 H 1.08002 * 125.88986 * 359.94899 * 26 25 2 45 45 H 1.08007 * 126.28947 * 180.16062 * 27 26 25 46 46 H 1.07994 * 126.29515 * 179.73538 * 28 27 26 47 47 H 1.08002 * 125.89108 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 6 1.6935 -0.2295 4.8812 9 6 0.4858 -0.5945 5.4465 10 6 0.0266 0.0581 6.5741 11 6 0.7741 1.0770 7.1396 12 6 1.9803 1.4415 6.5751 13 6 2.4427 0.7832 5.4483 14 6 2.5777 2.5645 7.3845 15 7 1.6536 2.8628 8.4832 16 6 1.8184 3.8169 9.4516 17 1 2.7011 4.4394 9.4516 18 6 0.8517 3.9834 10.4337 19 7 -0.2236 3.2244 10.4339 20 14 1.0762 5.2854 11.7542 21 1 0.4755 6.5639 11.2960 22 1 0.4066 4.8437 13.0039 23 1 2.5251 5.4837 12.0125 24 6 0.5198 1.9429 8.3473 25 7 2.0183 -0.6907 -1.1961 26 6 1.7655 -1.9902 -1.5219 27 6 2.3799 -2.2587 -2.6920 28 6 3.0441 -1.0847 -3.0987 29 6 2.8055 -0.1418 -2.1647 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.1494 0.5389 2.5436 34 1 1.8325 -1.9680 3.6509 35 1 3.2855 -0.9398 3.6506 36 1 -0.0987 -1.3889 5.0063 37 1 -0.9171 -0.2270 7.0152 38 1 3.3880 1.0654 5.0090 39 1 3.5431 2.2573 7.7863 40 1 2.7018 3.4470 6.7568 41 1 -0.8994 3.3409 11.1200 42 1 -0.4009 2.5094 8.2082 43 1 0.4403 1.3203 9.2385 44 1 1.1736 -2.6843 -0.9437 45 1 2.3686 -3.2018 -3.2182 46 1 3.6356 -0.9623 -3.9939 47 1 3.1746 0.8731 -2.1808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281293745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:18 Heat of formation + Delta-G solvation = 78.707579 kcal Electronic energy + Delta-G solvation = -27815.932090 eV Core-core repulsion = 23965.577335 eV Total energy + Delta-G solvation = -3850.354755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60691 -40.03927 -39.40460 -36.49139 -34.82494 -34.46513 -32.32970 -31.29563 -29.98843 -29.49263 -28.86234 -27.58612 -26.16065 -25.18227 -24.08933 -22.13063 -21.29977 -20.62947 -20.51269 -20.35139 -19.74264 -18.07262 -17.27550 -17.09400 -16.09425 -15.80751 -15.50410 -15.00984 -14.90173 -14.43294 -14.36853 -14.31172 -14.07257 -13.84261 -13.68812 -13.33449 -13.11342 -12.91025 -12.74441 -12.49182 -12.43286 -12.23913 -12.05928 -11.97114 -11.93440 -11.76506 -11.63645 -11.14253 -10.89683 -10.57383 -10.34754 -10.26963 -10.19372 -9.86657 -9.40048 -9.03910 -8.78567 -8.52005 -8.24935 -8.11201 -6.93139 -5.88436 -3.21939 1.43456 1.64291 2.05957 2.18484 2.53343 2.96578 3.04336 3.32672 3.37606 3.39773 3.98447 4.15941 4.30679 4.33931 4.35289 4.60061 4.75384 4.86383 5.02950 5.04825 5.11223 5.14785 5.21379 5.36711 5.39331 5.41466 5.48721 5.49893 5.51185 5.54349 5.75659 5.92627 6.00852 6.04720 6.16104 6.17678 6.39870 6.45065 6.47465 6.66230 6.67825 6.86515 6.96073 7.04518 7.08340 7.22554 7.24547 7.25743 7.44600 7.61648 7.79918 8.06036 9.04333 9.64183 10.30689 11.25692 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.001828 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.734913 B =15312.664431 C =15561.479854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.124 0.876 4 C 0.500 3.500 5 O -0.521 6.521 6 N -0.717 5.717 7 C 0.171 3.829 8 C -0.134 4.134 9 C -0.103 4.103 10 C -0.112 4.112 11 C -0.079 4.079 12 C -0.106 4.106 13 C -0.083 4.083 14 C 0.175 3.825 15 N -0.600 5.600 16 C -0.227 4.227 17 H 0.084 0.916 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.919 3.081 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.205 3.795 25 N -0.433 5.433 26 C 0.017 3.983 27 C -0.210 4.210 28 C -0.197 4.197 29 C -0.020 4.020 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.256 0.744 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.154 0.846 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -7.575 -21.896 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.141 0.859 4 C 0.283 3.717 5 O -0.396 6.396 6 N -0.370 5.370 7 C 0.049 3.951 8 C -0.135 4.135 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.080 4.080 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.049 3.951 15 N -0.327 5.327 16 C -0.355 4.355 17 H 0.102 0.898 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.748 3.252 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.080 3.920 25 N -0.110 5.110 26 C -0.113 4.113 27 C -0.234 4.234 28 C -0.222 4.222 29 C -0.149 4.149 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.172 0.828 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.653 -8.030 -21.451 22.914 hybrid contribution -0.158 1.019 0.877 1.354 sum 0.495 -7.012 -20.574 21.742 Atomic orbital electron populations 1.22142 0.91054 1.04236 1.04280 1.21276 0.96926 0.97559 0.83417 0.85862 1.20626 0.81032 0.85314 0.84698 1.90787 1.36825 1.25626 1.86325 1.46134 1.53564 1.32283 1.05018 1.20130 0.99161 0.95243 0.80581 1.19423 0.96666 0.99483 0.97905 1.20818 0.95443 0.99704 0.96160 1.20510 1.00142 0.96193 0.96209 1.21570 0.94111 0.94746 0.97573 1.20736 0.96489 0.98004 0.95450 1.20304 0.99334 0.95376 0.95208 1.19709 0.93650 0.92553 0.89139 1.43952 1.19396 1.40189 1.29149 1.18980 1.04618 1.09397 1.02475 0.89827 1.24841 0.96657 0.99651 0.99172 1.69915 1.10253 1.40914 1.35919 0.86019 0.77559 0.80701 0.80880 1.21420 1.21514 1.20519 1.19753 0.91975 0.89818 0.90421 1.43712 1.40064 1.10427 1.16788 1.21636 1.05777 0.85498 0.98347 1.20843 1.05146 0.99292 0.98139 1.20847 1.06322 0.93886 1.01138 1.21779 1.01514 0.99909 0.91676 0.90323 0.89866 0.91029 0.76105 0.90663 0.90712 0.86320 0.86054 0.86546 0.94551 0.94594 0.93421 0.91726 0.91716 0.82841 0.84938 0.84879 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.14 37.16 0.34 -0.53 16 2 C 0.12 0.87 3.36 -69.08 -0.23 0.63 16 3 H 0.12 0.66 8.06 -51.93 -0.42 0.24 16 4 C 0.50 5.07 7.11 -10.98 -0.08 4.99 16 5 O -0.52 -7.48 15.44 5.56 0.09 -7.40 16 6 N -0.72 -6.33 5.44 -61.47 -0.33 -6.66 16 7 C 0.17 1.80 5.80 -5.20 -0.03 1.77 16 8 C -0.13 -1.65 5.25 -104.65 -0.55 -2.19 16 9 C -0.10 -1.30 9.70 -39.61 -0.38 -1.68 16 10 C -0.11 -1.73 10.05 -39.54 -0.40 -2.12 16 11 C -0.08 -1.50 6.22 -104.57 -0.65 -2.15 16 12 C -0.11 -1.90 6.22 -104.57 -0.65 -2.55 16 13 C -0.08 -1.18 9.70 -39.54 -0.38 -1.57 16 14 C 0.18 3.60 7.25 -5.08 -0.04 3.57 16 15 N -0.60 -15.08 3.41 -175.68 -0.60 -15.68 16 16 C -0.23 -6.15 10.32 -15.06 -0.16 -6.30 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.11 10.44 55.49 0.58 -25.53 16 20 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 C 0.20 4.85 5.39 -5.09 -0.03 4.82 16 25 N -0.43 -4.26 2.40 -111.26 -0.27 -4.52 16 26 C 0.02 0.18 9.56 -16.75 -0.16 0.02 16 27 C -0.21 -2.25 10.86 -39.78 -0.43 -2.68 16 28 C -0.20 -2.01 10.86 -39.78 -0.43 -2.44 16 29 C -0.02 -0.20 11.39 -16.75 -0.19 -0.39 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.33 7.56 -51.93 -0.39 -0.06 16 32 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 33 H 0.40 2.83 7.88 -40.82 -0.32 2.51 16 34 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.07 1.67 7.49 -51.93 -0.39 1.28 16 43 H 0.07 1.69 7.49 -51.93 -0.39 1.30 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -32.69 391.22 -11.14 -43.83 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.94 Total: 2.82 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -4.55 Total: -9.08 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.62 Total: -52.40 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.69 -11.14 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281293745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.542 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds