Wall clock time and date at job start Tue Mar 31 2020 22:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46497 * 109.46983 * 239.99955 * 2 1 3 5 5 C 1.34779 * 120.00301 * 85.00062 * 4 2 1 6 6 O 1.21285 * 119.99293 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00371 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 5 4 9 9 C 1.36249 * 120.25823 * 264.72453 * 8 7 5 10 10 C 1.39341 * 121.01839 * 179.76408 * 9 8 7 11 11 C 1.36208 * 121.08216 * 0.51508 * 10 9 8 12 12 C 1.40337 * 119.51562 * 359.74876 * 11 10 9 13 13 C 1.40437 * 122.08031 * 179.97438 * 12 11 10 14 14 N 1.31244 * 119.87864 * 180.02562 * 13 12 11 15 15 C 1.32618 * 122.78158 * 359.97438 * 14 13 12 16 16 C 1.36170 * 121.87836 * 0.02562 * 15 14 13 17 17 C 1.40182 * 120.26062 * 84.99850 * 8 7 5 18 18 C 1.53007 * 109.47225 * 120.00125 * 2 1 3 19 19 C 1.53497 * 114.20425 * 299.99697 * 18 2 1 20 20 N 1.47062 * 87.98453 * 220.14915 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.08994 * 109.47326 * 60.00500 * 1 2 3 31 31 H 1.09010 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47235 * 299.99957 * 1 2 3 33 33 H 0.97000 * 119.99936 * 264.99787 * 4 2 1 34 34 H 1.09001 * 109.47472 * 300.00322 * 7 5 4 35 35 H 1.08999 * 109.47208 * 59.99900 * 7 5 4 36 36 H 1.08002 * 119.49392 * 0.02562 * 9 8 7 37 37 H 1.08001 * 119.46014 * 180.23830 * 10 9 8 38 38 H 1.07998 * 120.24049 * 179.77323 * 11 10 9 39 39 H 1.07999 * 120.06710 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.06021 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.66181 * 180.02562 * 16 15 14 42 42 H 1.08994 * 113.28303 * 73.06545 * 18 2 1 43 43 H 1.09000 * 113.46436 * 105.36543 * 19 18 2 44 44 H 1.08997 * 113.51966 * 334.94328 * 19 18 2 45 45 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 47 47 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5874 8 6 2.6998 0.2396 -4.7413 9 6 1.6592 0.3181 -5.6172 10 6 1.6866 1.2109 -6.6867 11 6 2.7583 2.0251 -6.8956 12 6 3.8513 1.9686 -6.0172 13 6 4.9836 2.7827 -6.1821 14 7 5.9819 2.6937 -5.3346 15 6 5.9782 1.8566 -4.3061 16 6 4.9282 1.0254 -4.0592 17 6 3.8198 1.0623 -4.9250 18 6 2.0400 -0.7213 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 2.9375 -0.3491 3.0975 21 6 3.4887 -0.5678 4.3319 22 1 2.8617 -0.5662 5.2112 23 6 4.8543 -0.7852 4.4535 24 7 5.6185 -0.7866 3.3819 25 14 5.6074 -1.0758 6.1381 26 1 4.9960 -2.2816 6.7522 27 1 7.0713 -1.2809 5.9972 28 1 5.3533 0.1036 7.0040 29 6 3.4336 -0.2688 1.7154 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.6491 -1.1204 -3.3979 35 1 1.9777 -1.5509 -3.8325 36 1 0.7979 -0.3186 -5.4781 37 1 0.8462 1.2549 -7.3635 38 1 2.7668 2.7095 -7.7311 39 1 5.0331 3.4807 -7.0047 40 1 6.8322 1.8334 -3.6455 41 1 4.9458 0.3515 -3.2154 42 1 1.9087 -1.8024 1.2063 43 1 0.8072 -0.6475 3.0799 44 1 1.3577 0.9769 2.4862 45 1 6.5726 -0.9389 3.4669 46 1 3.6879 0.7441 1.4036 47 1 4.2217 -0.9887 1.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282724060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:03 Heat of formation + Delta-G solvation = 71.476830 kcal Electronic energy + Delta-G solvation = -28562.824670 eV Core-core repulsion = 24712.156366 eV Total energy + Delta-G solvation = -3850.668303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.13772 -39.74551 -38.31347 -37.46587 -34.87931 -34.00113 -32.27741 -31.53450 -30.98300 -30.20051 -27.71099 -27.54397 -24.73621 -24.32533 -23.99157 -23.73649 -22.14043 -20.96953 -20.26525 -19.10274 -18.19148 -17.30426 -16.94246 -16.91757 -16.72344 -16.00239 -15.36537 -14.90066 -14.81799 -14.49849 -14.42912 -14.06257 -13.90824 -13.83783 -13.62912 -13.34970 -13.16166 -12.82885 -12.50230 -12.37275 -12.13500 -12.05266 -11.83497 -11.72098 -11.36131 -11.26146 -11.17664 -10.94421 -10.79183 -10.40447 -10.28944 -10.04056 -9.78556 -9.70362 -9.60553 -9.24289 -9.19159 -8.83176 -8.82748 -8.16433 -6.90248 -5.79012 -3.11550 0.20006 0.77554 1.74828 2.72068 2.85453 3.34480 3.38230 3.42269 3.43525 3.96473 4.18466 4.33276 4.43267 4.46919 4.59051 4.71085 4.81876 4.87484 4.93619 5.06097 5.12398 5.17655 5.22793 5.24616 5.31356 5.49923 5.52195 5.62416 5.63561 5.66404 5.77075 5.84128 5.88790 5.92239 6.02104 6.16581 6.22050 6.30168 6.35020 6.38967 6.49127 6.53645 6.64649 6.65924 6.78974 7.19186 7.32013 7.52040 7.64439 7.86167 7.95428 8.34381 9.01539 9.68131 10.61977 11.38372 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002572 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.121664 B =10883.004176 C =12363.246976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.086 0.914 4 N -0.718 5.718 5 C 0.513 3.487 6 O -0.534 6.534 7 C -0.108 4.108 8 C -0.051 4.051 9 C -0.090 4.090 10 C -0.116 4.116 11 C -0.090 4.090 12 C -0.112 4.112 13 C 0.141 3.859 14 N -0.488 5.488 15 C 0.076 3.924 16 C -0.147 4.147 17 C -0.007 4.007 18 C -0.152 4.152 19 C 0.130 3.870 20 N -0.611 5.611 21 C -0.219 4.219 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.164 3.836 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.254 0.746 46 H 0.023 0.977 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -0.417 -22.647 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.298 3.702 6 O -0.410 6.410 7 C -0.148 4.148 8 C -0.052 4.052 9 C -0.110 4.110 10 C -0.134 4.134 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.031 4.031 14 N -0.196 5.196 15 C -0.067 4.067 16 C -0.167 4.167 17 C -0.013 4.013 18 C -0.172 4.172 19 C 0.003 3.997 20 N -0.336 5.336 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.211 1.211 29 C 0.038 3.962 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.063 0.837 -22.376 23.479 hybrid contribution -0.192 -1.026 1.186 1.580 sum -7.255 -0.189 -21.190 22.398 Atomic orbital electron populations 1.22120 0.95703 1.01695 1.02050 1.20993 0.93417 0.97447 0.83182 0.89569 1.46105 1.67075 1.14085 1.09626 1.20348 0.78107 0.87442 0.84271 1.90731 1.49592 1.15760 1.84912 1.20726 1.04477 0.97965 0.91652 1.19034 0.93826 0.96781 0.95526 1.20810 0.97467 0.98390 0.94288 1.20851 0.98496 0.96147 0.97943 1.20944 0.92749 0.98880 0.98451 1.18992 0.97029 0.98593 0.96767 1.23169 0.87816 0.95428 0.96666 1.67420 1.28443 1.20026 1.03734 1.22207 0.98197 0.91802 0.94452 1.21949 0.93880 1.01123 0.99723 1.17939 0.94221 0.94947 0.94147 1.23671 1.01537 0.99671 0.92362 1.22310 0.90208 0.96749 0.90456 1.45571 1.02932 1.82173 1.02964 1.18894 0.91150 1.41760 0.82816 0.90175 1.24798 0.95861 1.02311 0.97482 1.69809 1.04629 1.55342 1.26905 0.86185 0.78217 0.78102 0.83171 1.21044 1.21514 1.21150 1.22141 0.92534 0.97866 0.83664 0.92854 0.92739 0.91461 0.76644 0.87585 0.87619 0.85698 0.85580 0.85060 0.82154 0.82839 0.84536 0.89069 0.94143 0.94932 0.93597 0.95886 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.29 37.16 0.35 -1.70 16 2 C 0.15 2.30 2.48 -67.93 -0.17 2.13 16 3 H 0.09 1.52 7.34 -51.93 -0.38 1.14 16 4 N -0.72 -8.93 5.08 -53.81 -0.27 -9.20 16 5 C 0.51 6.72 7.79 -10.99 -0.09 6.64 16 6 O -0.53 -9.26 15.70 5.55 0.09 -9.17 16 7 C -0.11 -1.02 5.28 -29.04 -0.15 -1.18 16 8 C -0.05 -0.57 4.38 -104.61 -0.46 -1.02 16 9 C -0.09 -0.86 9.58 -39.89 -0.38 -1.24 16 10 C -0.12 -0.99 9.94 -39.90 -0.40 -1.38 16 11 C -0.09 -0.80 9.81 -39.52 -0.39 -1.19 16 12 C -0.11 -1.26 5.74 -106.86 -0.61 -1.88 16 13 C 0.14 1.54 11.05 -16.98 -0.19 1.35 16 14 N -0.49 -6.35 10.30 -13.15 -0.14 -6.49 16 15 C 0.08 0.96 11.07 -17.96 -0.20 0.76 16 16 C -0.15 -1.84 9.36 -39.40 -0.37 -2.21 16 17 C -0.01 -0.09 5.75 -106.82 -0.61 -0.70 16 18 C -0.15 -2.65 3.66 -89.97 -0.33 -2.98 16 19 C 0.13 2.60 7.33 -8.51 -0.06 2.53 16 20 N -0.61 -15.65 3.78 -184.61 -0.70 -16.35 16 21 C -0.22 -6.16 10.75 -15.06 -0.16 -6.32 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.20 11.50 55.49 0.64 -26.56 16 25 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.16 3.77 6.99 -8.37 -0.06 3.71 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 33 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 34 H 0.11 0.86 6.80 -51.93 -0.35 0.50 16 35 H 0.11 0.68 8.04 -51.93 -0.42 0.27 16 36 H 0.13 0.92 8.05 -52.49 -0.42 0.49 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.14 1.56 6.65 -52.49 -0.35 1.21 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.65 8.11 -51.93 -0.42 0.22 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 46 H 0.02 0.57 7.94 -51.93 -0.41 0.15 16 47 H 0.07 1.78 7.12 -51.93 -0.37 1.41 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -35.70 390.02 -10.70 -46.40 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.79 Total: 3.41 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -4.38 Total: -4.99 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.47 Total: -58.60 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.70 -10.70 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282724060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.872 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds