Wall clock time and date at job start Tue Mar 31 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46497 * 109.46983 * 239.99955 * 2 1 3 5 5 C 1.34779 * 120.00301 * 85.00062 * 4 2 1 6 6 O 1.21285 * 119.99293 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00371 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 5 4 9 9 C 1.36249 * 120.25823 * 264.72453 * 8 7 5 10 10 C 1.39341 * 121.01839 * 179.76408 * 9 8 7 11 11 C 1.36208 * 121.08216 * 0.51508 * 10 9 8 12 12 C 1.40337 * 119.51562 * 359.74876 * 11 10 9 13 13 C 1.40437 * 122.08031 * 179.97438 * 12 11 10 14 14 N 1.31244 * 119.87864 * 180.02562 * 13 12 11 15 15 C 1.32618 * 122.78158 * 359.97438 * 14 13 12 16 16 C 1.36170 * 121.87836 * 0.02562 * 15 14 13 17 17 C 1.40182 * 120.26062 * 84.99850 * 8 7 5 18 18 C 1.53007 * 109.47225 * 120.00125 * 2 1 3 19 19 C 1.53497 * 114.20425 * 299.99697 * 18 2 1 20 20 N 1.47062 * 87.98453 * 220.14915 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.08994 * 109.47326 * 60.00500 * 1 2 3 31 31 H 1.09010 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47235 * 299.99957 * 1 2 3 33 33 H 0.97000 * 119.99936 * 264.99787 * 4 2 1 34 34 H 1.09001 * 109.47472 * 300.00322 * 7 5 4 35 35 H 1.08999 * 109.47208 * 59.99900 * 7 5 4 36 36 H 1.08002 * 119.49392 * 0.02562 * 9 8 7 37 37 H 1.08001 * 119.46014 * 180.23830 * 10 9 8 38 38 H 1.07998 * 120.24049 * 179.77323 * 11 10 9 39 39 H 1.07999 * 120.06710 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.06021 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.66181 * 180.02562 * 16 15 14 42 42 H 1.08994 * 113.28303 * 73.06545 * 18 2 1 43 43 H 1.09000 * 113.46436 * 105.36543 * 19 18 2 44 44 H 1.08997 * 113.51966 * 334.94328 * 19 18 2 45 45 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 47 47 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5874 8 6 2.6998 0.2396 -4.7413 9 6 1.6592 0.3181 -5.6172 10 6 1.6866 1.2109 -6.6867 11 6 2.7583 2.0251 -6.8956 12 6 3.8513 1.9686 -6.0172 13 6 4.9836 2.7827 -6.1821 14 7 5.9819 2.6937 -5.3346 15 6 5.9782 1.8566 -4.3061 16 6 4.9282 1.0254 -4.0592 17 6 3.8198 1.0623 -4.9250 18 6 2.0400 -0.7213 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 2.9375 -0.3491 3.0975 21 6 3.4887 -0.5678 4.3319 22 1 2.8617 -0.5662 5.2112 23 6 4.8543 -0.7852 4.4535 24 7 5.6185 -0.7866 3.3819 25 14 5.6074 -1.0758 6.1381 26 1 4.9960 -2.2816 6.7522 27 1 7.0713 -1.2809 5.9972 28 1 5.3533 0.1036 7.0040 29 6 3.4336 -0.2688 1.7154 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.6491 -1.1204 -3.3979 35 1 1.9777 -1.5509 -3.8325 36 1 0.7979 -0.3186 -5.4781 37 1 0.8462 1.2549 -7.3635 38 1 2.7668 2.7095 -7.7311 39 1 5.0331 3.4807 -7.0047 40 1 6.8322 1.8334 -3.6455 41 1 4.9458 0.3515 -3.2154 42 1 1.9087 -1.8024 1.2063 43 1 0.8072 -0.6475 3.0799 44 1 1.3577 0.9769 2.4862 45 1 6.5726 -0.9389 3.4669 46 1 3.6879 0.7441 1.4036 47 1 4.2217 -0.9887 1.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282724060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:02 Heat of formation + Delta-G solvation = 48.599634 kcal Electronic energy + Delta-G solvation = -28563.816699 eV Core-core repulsion = 24712.156366 eV Total energy + Delta-G solvation = -3851.660333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.95152 -40.93398 -39.80643 -38.30143 -36.18959 -34.81439 -34.21642 -32.45136 -31.99634 -31.19550 -29.42819 -28.47423 -26.42203 -25.68345 -25.13179 -24.53669 -23.43344 -22.10489 -21.39044 -20.56495 -18.95828 -18.78722 -18.12736 -17.93564 -17.72351 -17.20499 -16.91176 -16.25377 -15.77556 -15.67083 -15.52513 -15.29810 -15.08685 -14.80305 -14.70281 -14.63454 -14.28180 -14.03210 -13.60515 -13.48076 -13.31041 -13.06057 -12.99039 -12.93449 -12.89263 -12.69360 -12.64210 -12.51028 -12.07689 -11.91666 -11.75307 -11.54979 -11.16232 -11.03890 -10.91356 -10.75264 -10.48204 -10.00633 -9.97075 -8.96328 -8.94305 -7.92964 -5.27153 -0.57878 -0.03236 0.94789 1.43983 1.47729 1.53832 1.70750 2.05903 2.35194 2.45839 3.13296 3.28588 3.41030 3.44042 3.52983 3.66767 3.75740 3.86879 3.93614 3.97195 4.04469 4.13323 4.27473 4.29930 4.36607 4.44989 4.49929 4.55094 4.57559 4.74910 4.76469 4.80307 4.85371 4.86141 4.87494 4.99431 5.08201 5.13362 5.15508 5.23103 5.33562 5.46923 5.47705 5.54964 5.56208 5.66750 5.68915 5.90703 5.95923 6.65146 6.88060 6.99218 7.34506 7.57574 8.58378 9.24206 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002572 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.121664 B =10883.004176 C =12363.246976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.164 3.836 3 H 0.053 0.947 4 N -0.711 5.711 5 C 0.513 3.487 6 O -0.579 6.579 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.088 4.088 10 C -0.119 4.119 11 C -0.089 4.089 12 C -0.132 4.132 13 C 0.141 3.859 14 N -0.517 5.517 15 C 0.056 3.944 16 C -0.163 4.163 17 C -0.030 4.030 18 C -0.110 4.110 19 C 0.128 3.872 20 N -0.644 5.644 21 C -0.233 4.233 22 H 0.086 0.914 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.981 3.019 26 H -0.271 1.271 27 H -0.294 1.294 28 H -0.279 1.279 29 C 0.160 3.840 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.194 0.806 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.248 0.752 46 H -0.001 1.001 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 -1.541 -24.037 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.058 3.942 3 H 0.072 0.928 4 N -0.363 5.363 5 C 0.301 3.699 6 O -0.459 6.459 7 C -0.139 4.139 8 C -0.077 4.077 9 C -0.107 4.107 10 C -0.137 4.137 11 C -0.109 4.109 12 C -0.134 4.134 13 C -0.030 4.030 14 N -0.226 5.226 15 C -0.086 4.086 16 C -0.183 4.183 17 C -0.036 4.036 18 C -0.130 4.130 19 C 0.003 3.997 20 N -0.370 5.370 21 C -0.361 4.361 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.197 1.197 27 H -0.220 1.220 28 H -0.206 1.206 29 C 0.034 3.966 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.134 0.866 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.182 0.818 39 H 0.211 0.789 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.017 0.983 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.661 -0.319 -23.767 25.657 hybrid contribution 0.519 -0.615 1.540 1.737 sum -9.142 -0.934 -22.227 24.052 Atomic orbital electron populations 1.22025 0.93341 1.03168 1.02042 1.20680 0.95007 0.95484 0.83023 0.92841 1.45993 1.66792 1.14720 1.08815 1.20976 0.76949 0.86921 0.85093 1.90710 1.51642 1.17879 1.85669 1.20747 1.05706 0.98194 0.89251 1.19245 0.94129 0.97596 0.96745 1.21242 0.97403 0.98312 0.93771 1.21301 0.99261 0.95205 0.97949 1.21353 0.91766 0.99175 0.98574 1.19324 0.98121 0.98669 0.97271 1.23763 0.87166 0.95367 0.96705 1.67435 1.29737 1.20855 1.04562 1.22360 0.98735 0.92431 0.95049 1.22020 0.94464 1.01573 1.00243 1.18261 0.94705 0.95904 0.94679 1.23312 0.96548 1.00544 0.92622 1.22476 0.88425 0.97458 0.91348 1.45995 1.05635 1.82385 1.02980 1.19333 0.91682 1.40795 0.84258 0.89588 1.25680 0.96448 1.02860 1.01147 1.70010 1.04355 1.56837 1.28930 0.85119 0.76799 0.78357 0.78864 1.19700 1.22047 1.20567 1.22073 0.94922 0.95939 0.83629 0.93136 0.90439 0.91257 0.74900 0.86613 0.83903 0.83279 0.82328 0.81828 0.78898 0.82494 0.84631 0.87233 0.92099 0.94470 0.94284 0.98333 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.29 71.98 0.67 -2.82 16 2 C 0.16 4.75 2.48 44.99 0.11 4.86 16 3 H 0.05 1.94 7.34 -2.39 -0.02 1.93 16 4 N -0.71 -16.85 5.08 -442.53 -2.25 -19.10 16 5 C 0.51 13.08 7.79 87.65 0.68 13.76 16 6 O -0.58 -20.28 15.70 -3.04 -0.05 -20.33 16 7 C -0.10 -1.73 5.28 29.10 0.15 -1.57 16 8 C -0.08 -1.60 4.38 -19.86 -0.09 -1.69 16 9 C -0.09 -1.44 9.58 22.07 0.21 -1.23 16 10 C -0.12 -1.64 9.94 22.06 0.22 -1.42 16 11 C -0.09 -1.35 9.81 22.31 0.22 -1.13 16 12 C -0.13 -2.89 5.74 -21.31 -0.12 -3.01 16 13 C 0.14 3.05 11.05 85.32 0.94 3.99 16 14 N -0.52 -13.99 10.30 -195.52 -2.01 -16.00 16 15 C 0.06 1.53 11.07 84.09 0.93 2.46 16 16 C -0.16 -4.35 9.36 22.39 0.21 -4.14 16 17 C -0.03 -0.76 5.75 -21.29 -0.12 -0.88 16 18 C -0.11 -3.76 3.66 -10.37 -0.04 -3.80 16 19 C 0.13 5.03 7.33 83.18 0.61 5.64 16 20 N -0.64 -33.39 3.78 -737.98 -2.79 -36.18 16 21 C -0.23 -13.20 10.75 84.03 0.90 -12.30 16 22 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.95 -58.16 11.50 21.65 0.25 -57.91 16 25 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 29 C 0.16 7.63 6.99 83.27 0.58 8.22 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.62 7.49 -2.38 -0.02 1.60 16 33 H 0.41 7.40 8.60 -92.71 -0.80 6.61 16 34 H 0.12 1.77 6.80 -2.39 -0.02 1.75 16 35 H 0.14 1.35 8.04 -2.39 -0.02 1.33 16 36 H 0.15 1.61 8.05 -2.91 -0.02 1.59 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.14 3.39 6.65 -2.91 -0.02 3.37 16 42 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.04 1.45 8.11 -2.39 -0.02 1.43 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.00 -0.06 7.94 -2.39 -0.02 -0.07 16 47 H 0.04 2.16 7.12 -2.39 -0.02 2.14 16 Total: -1.00 -81.36 390.02 1.91 -79.45 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.19 Total: 20.62 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.54 Total: 1.46 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -6.80 Total: -129.19 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -81.36 1.91 -79.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282724060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.047 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds