Wall clock time and date at job start Tue Mar 31 2020 22:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46497 * 109.46983 * 239.99955 * 2 1 3 5 5 C 1.34779 * 120.00301 * 85.00062 * 4 2 1 6 6 O 1.21285 * 119.99293 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00371 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 5 4 9 9 C 1.36171 * 120.19219 * 264.72640 * 8 7 5 10 10 C 1.39311 * 120.86564 * 179.72411 * 9 8 7 11 11 C 1.36112 * 121.07005 * 0.57586 * 10 9 8 12 12 C 1.40558 * 119.74822 * 359.70833 * 11 10 9 13 13 N 1.33686 * 121.08883 * 180.02562 * 12 11 10 14 14 C 1.31078 * 121.32022 * 180.02562 * 13 12 11 15 15 C 1.39338 * 121.75923 * 359.95678 * 14 13 12 16 16 C 1.36575 * 119.93574 * 0.02562 * 15 14 13 17 17 C 1.40391 * 120.19421 * 84.99880 * 8 7 5 18 18 C 1.53007 * 109.47225 * 120.00125 * 2 1 3 19 19 C 1.53497 * 114.20425 * 299.99697 * 18 2 1 20 20 N 1.47062 * 87.98453 * 220.14915 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09004 * 109.47235 * 299.99957 * 1 2 3 31 31 H 1.08994 * 109.47326 * 60.00500 * 1 2 3 32 32 H 1.09010 * 109.46870 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99936 * 264.99787 * 4 2 1 34 34 H 1.09001 * 109.47472 * 300.00322 * 7 5 4 35 35 H 1.08999 * 109.47208 * 59.99900 * 7 5 4 36 36 H 1.07999 * 119.57276 * 0.02562 * 9 8 7 37 37 H 1.08007 * 119.46786 * 180.25870 * 10 9 8 38 38 H 1.07998 * 120.12792 * 179.68136 * 11 10 9 39 39 H 1.07998 * 119.12236 * 179.97438 * 14 13 12 40 40 H 1.07993 * 120.03697 * 179.97438 * 15 14 13 41 41 H 1.07996 * 120.93041 * 180.02562 * 16 15 14 42 42 H 1.08994 * 113.28303 * 73.06545 * 18 2 1 43 43 H 1.09000 * 113.46436 * 105.36543 * 19 18 2 44 44 H 1.08997 * 113.51966 * 334.94328 * 19 18 2 45 45 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 47 47 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5874 8 6 2.6998 0.2396 -4.7413 9 6 1.6590 0.3169 -5.6159 10 6 1.6880 1.2108 -6.6840 11 6 2.7602 2.0233 -6.8912 12 6 3.8566 1.9686 -6.0134 13 7 4.9232 2.7547 -6.1913 14 6 5.9483 2.7072 -5.3758 15 6 5.9787 1.8396 -4.2858 16 6 4.9213 1.0092 -4.0459 17 6 3.8222 1.0629 -4.9240 18 6 2.0400 -0.7213 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 2.9375 -0.3491 3.0975 21 6 3.4887 -0.5678 4.3319 22 1 2.8617 -0.5662 5.2112 23 6 4.8543 -0.7852 4.4535 24 7 5.6185 -0.7866 3.3819 25 14 5.6074 -1.0758 6.1381 26 1 4.5425 -1.0247 7.1719 27 1 6.2604 -2.4092 6.1650 28 1 6.6179 -0.0239 6.4167 29 6 3.4336 -0.2688 1.7154 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.6491 -1.1204 -3.3979 35 1 1.9777 -1.5509 -3.8325 36 1 0.7976 -0.3196 -5.4770 37 1 0.8482 1.2563 -7.3617 38 1 2.7687 2.7070 -7.7272 39 1 6.7917 3.3580 -5.5532 40 1 6.8380 1.8232 -3.6318 41 1 4.9277 0.3308 -3.2057 42 1 1.9087 -1.8024 1.2063 43 1 0.8072 -0.6475 3.0799 44 1 1.3577 0.9769 2.4862 45 1 6.5726 -0.9389 3.4669 46 1 3.6879 0.7441 1.4036 47 1 4.2217 -0.9887 1.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282724628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:56 Heat of formation + Delta-G solvation = 72.576498 kcal Electronic energy + Delta-G solvation = -28576.254922 eV Core-core repulsion = 24725.634304 eV Total energy + Delta-G solvation = -3850.620618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.12261 -39.75221 -38.31115 -37.24568 -34.89177 -34.19615 -32.31335 -31.59331 -30.66672 -30.39225 -27.71357 -27.55220 -24.74892 -24.35366 -24.00101 -23.72861 -22.06944 -20.87719 -20.24786 -19.10793 -18.28843 -17.28634 -17.11489 -16.93604 -16.75823 -16.02664 -15.13829 -14.91364 -14.75342 -14.51792 -14.43229 -14.03370 -13.86784 -13.80014 -13.46790 -13.36476 -13.11281 -13.04227 -12.48333 -12.34163 -12.02801 -11.80604 -11.75780 -11.72351 -11.38393 -11.36707 -11.26807 -10.96615 -10.81488 -10.60261 -10.39011 -10.02468 -9.79951 -9.73299 -9.61820 -9.24806 -8.88501 -8.85575 -8.83390 -8.30778 -6.91593 -5.80933 -3.13257 0.25313 0.71972 1.85719 2.71268 2.76054 3.33080 3.36084 3.41421 3.43812 4.01030 4.16134 4.27215 4.41620 4.55356 4.66561 4.68286 4.85139 4.90464 4.97591 5.07157 5.12212 5.19286 5.23586 5.25364 5.30110 5.38759 5.51062 5.65387 5.68658 5.76222 5.81297 5.89639 5.91440 5.94184 6.01485 6.20546 6.21331 6.29953 6.34541 6.38146 6.41402 6.52553 6.63520 6.71370 6.78065 7.17779 7.30585 7.50886 7.63665 7.78349 7.93792 8.33696 9.00023 9.66500 10.60258 11.36601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002572 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.775878 B =10885.292407 C =12355.685222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.086 0.914 4 N -0.718 5.718 5 C 0.513 3.487 6 O -0.533 6.533 7 C -0.110 4.110 8 C -0.036 4.036 9 C -0.109 4.109 10 C -0.097 4.097 11 C -0.097 4.097 12 C 0.126 3.874 13 N -0.478 5.478 14 C 0.130 3.870 15 C -0.175 4.175 16 C -0.052 4.052 17 C -0.085 4.085 18 C -0.152 4.152 19 C 0.130 3.870 20 N -0.611 5.611 21 C -0.217 4.217 22 H 0.082 0.918 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.164 3.836 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.400 0.600 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.023 0.977 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 -0.725 -20.775 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.298 3.702 6 O -0.409 6.409 7 C -0.150 4.150 8 C -0.037 4.037 9 C -0.127 4.127 10 C -0.117 4.117 11 C -0.116 4.116 12 C 0.005 3.995 13 N -0.186 5.186 14 C -0.042 4.042 15 C -0.195 4.195 16 C -0.078 4.078 17 C -0.087 4.087 18 C -0.172 4.172 19 C 0.003 3.997 20 N -0.337 5.337 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.038 3.962 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.094 0.621 -21.280 22.145 hybrid contribution 0.676 -1.021 1.790 2.169 sum -5.418 -0.400 -19.490 20.234 Atomic orbital electron populations 1.22121 0.95684 1.01711 1.02071 1.20993 0.93443 0.97432 0.83170 0.89572 1.46109 1.67089 1.14087 1.09624 1.20350 0.78160 0.87452 0.84257 1.90737 1.49532 1.15757 1.84886 1.20760 1.04443 0.98084 0.91726 1.19058 0.93587 0.96007 0.95044 1.20738 0.97806 0.99265 0.94867 1.20831 0.98035 0.95295 0.97551 1.20758 0.92101 0.99703 0.99020 1.18836 0.93629 0.93058 0.93945 1.68033 1.00483 1.21578 1.28517 1.22950 0.95751 0.95452 0.90056 1.21923 1.00200 0.97808 0.99584 1.21527 0.91915 0.97256 0.97063 1.18612 0.95423 0.98024 0.96639 1.23670 1.01511 0.99683 0.92370 1.22313 0.90199 0.96766 0.90459 1.45590 1.02954 1.82147 1.02978 1.18993 0.91158 1.41431 0.82829 0.90060 1.24800 0.95871 1.02372 0.97495 1.69831 1.04507 1.55566 1.26781 0.86035 0.79119 0.77471 0.83080 1.20423 1.21663 1.21714 1.22141 0.92549 0.97851 0.83681 0.91464 0.92823 0.92729 0.76639 0.87649 0.87512 0.85620 0.85288 0.84898 0.82444 0.84315 0.84503 0.89058 0.94122 0.94908 0.93725 0.95895 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.29 37.16 0.35 -1.69 16 2 C 0.15 2.28 2.48 -67.93 -0.17 2.11 16 3 H 0.09 1.51 7.34 -51.93 -0.38 1.13 16 4 N -0.72 -8.82 5.08 -53.81 -0.27 -9.10 16 5 C 0.51 6.67 7.79 -10.99 -0.09 6.58 16 6 O -0.53 -9.23 15.70 5.55 0.09 -9.15 16 7 C -0.11 -1.03 5.24 -29.04 -0.15 -1.19 16 8 C -0.04 -0.41 4.38 -104.56 -0.46 -0.86 16 9 C -0.11 -1.09 9.58 -39.93 -0.38 -1.47 16 10 C -0.10 -0.93 9.94 -39.95 -0.40 -1.32 16 11 C -0.10 -1.09 9.98 -39.47 -0.39 -1.48 16 12 C 0.13 1.68 6.60 -84.86 -0.56 1.12 16 13 N -0.48 -6.32 10.34 -10.98 -0.11 -6.44 16 14 C 0.13 1.44 11.14 -17.46 -0.19 1.24 16 15 C -0.18 -1.89 10.03 -39.77 -0.40 -2.29 16 16 C -0.05 -0.62 9.37 -39.22 -0.37 -0.99 16 17 C -0.09 -1.10 5.74 -106.80 -0.61 -1.71 16 18 C -0.15 -2.63 3.66 -89.97 -0.33 -2.96 16 19 C 0.13 2.57 7.33 -8.51 -0.06 2.51 16 20 N -0.61 -15.54 3.78 -184.61 -0.70 -16.24 16 21 C -0.22 -6.05 10.75 -15.06 -0.16 -6.22 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -26.97 11.50 55.49 0.64 -26.33 16 25 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 C 0.16 3.73 6.99 -8.37 -0.06 3.67 16 30 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 34 H 0.11 0.82 6.73 -51.93 -0.35 0.47 16 35 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 36 H 0.13 0.96 8.05 -52.49 -0.42 0.54 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.14 1.48 6.57 -52.49 -0.34 1.14 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.65 8.11 -51.93 -0.42 0.22 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.56 7.94 -51.93 -0.41 0.14 16 47 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -35.54 389.97 -10.83 -46.37 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.79 Total: 3.35 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.53 Total: -5.28 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.45 Total: -58.10 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.54 -10.83 -46.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282724628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.947 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds