Wall clock time and date at job start Tue Mar 31 2020 23:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47129 * 120.00161 * 2 1 3 5 5 N 1.46504 * 109.47198 * 174.99625 * 4 2 1 6 6 C 1.46491 * 120.00040 * 270.00009 * 5 4 2 7 7 C 1.34779 * 119.99250 * 90.00074 * 5 4 2 8 8 O 1.21563 * 120.00556 * 4.04239 * 7 5 4 9 9 C 1.47694 * 119.99510 * 184.05023 * 7 5 4 10 10 C 1.39470 * 120.20556 * 310.60044 * 9 7 5 11 11 C 1.37979 * 119.97179 * 180.02562 * 10 9 7 12 12 C 1.38481 * 120.39530 * 359.97438 * 11 10 9 13 13 C 1.38076 * 120.42412 * 0.02562 * 12 11 10 14 14 C 1.39175 * 120.01859 * 359.97438 * 13 12 11 15 15 C 1.48222 * 120.19808 * 179.97438 * 14 13 12 16 16 C 1.39826 * 120.91447 * 124.01439 * 15 14 13 17 17 C 1.37995 * 119.01087 * 179.80014 * 16 15 14 18 18 N 1.31903 * 120.89057 * 0.48136 * 17 16 15 19 19 C 1.31902 * 122.02469 * 359.74640 * 18 17 16 20 20 C 1.37997 * 120.89380 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47312 * 239.99726 * 2 1 3 22 22 C 1.36942 * 119.99943 * 84.99847 * 21 2 1 23 23 H 1.07999 * 119.99479 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99854 * 179.97438 * 22 21 2 25 25 N 1.31613 * 120.00183 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99528 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47178 * 90.00568 * 26 24 22 28 28 H 1.48499 * 109.46847 * 210.00437 * 26 24 22 29 29 H 1.48500 * 109.47421 * 330.00031 * 26 24 22 30 30 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46979 * 300.00528 * 1 2 3 32 32 H 1.09006 * 109.46973 * 59.99848 * 1 2 3 33 33 H 1.09000 * 109.47000 * 54.99605 * 4 2 1 34 34 H 1.08996 * 109.46592 * 295.00169 * 4 2 1 35 35 H 1.09004 * 109.47047 * 271.30794 * 6 5 4 36 36 H 1.08997 * 109.47293 * 31.31420 * 6 5 4 37 37 H 1.09008 * 109.46921 * 151.31059 * 6 5 4 38 38 H 1.08005 * 120.01030 * 359.97438 * 10 9 7 39 39 H 1.07998 * 119.79647 * 179.72011 * 11 10 9 40 40 H 1.08000 * 119.78731 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.99098 * 179.97438 * 13 12 11 42 42 H 1.07999 * 120.49375 * 359.97438 * 16 15 14 43 43 H 1.08004 * 119.55160 * 180.20026 * 17 16 15 44 44 H 1.08001 * 119.55707 * 179.97438 * 19 18 17 45 45 H 1.07994 * 120.49719 * 179.97438 * 20 19 18 46 46 H 0.97005 * 120.00739 * 265.00463 * 21 2 1 47 47 H 0.97003 * 119.99959 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2675 0.1491 1.7157 8 8 3.7505 1.0797 2.3025 9 6 5.7367 0.0876 1.5779 10 6 6.4236 -1.0818 1.9033 11 6 7.7963 -1.1338 1.7732 12 6 8.4995 -0.0302 1.3200 13 6 7.8360 1.1357 0.9932 14 6 6.4516 1.2074 1.1178 15 6 5.7354 2.4573 0.7687 16 6 4.7039 2.4544 -0.1753 17 6 4.0608 3.6398 -0.4675 18 7 4.4138 4.7652 0.1231 19 6 5.3840 4.8124 1.0154 20 6 6.0766 3.6727 1.3700 21 7 2.0184 -0.6907 -1.1961 22 6 2.1491 -0.0076 -2.3758 23 1 1.8926 1.0404 -2.4241 24 6 2.6124 -0.6619 -3.5090 25 7 2.9255 -1.9388 -3.4498 26 14 2.7914 0.2702 -5.1179 27 1 4.1537 0.8553 -5.2021 28 1 2.5815 -0.6610 -6.2554 29 1 1.7813 1.3573 -5.1754 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1584 2.1369 35 1 4.2609 -2.7776 1.3047 36 1 3.4865 -2.3581 -0.2421 37 1 5.0955 -1.7076 0.1528 38 1 5.8814 -1.9460 2.2577 39 1 8.3258 -2.0393 2.0303 40 1 9.5738 -0.0816 1.2223 41 1 8.3913 1.9923 0.6409 42 1 4.4130 1.5375 -0.6663 43 1 3.2607 3.6470 -1.1929 44 1 5.6405 5.7559 1.4742 45 1 6.8702 3.7188 2.1010 46 1 2.2490 -1.6319 -1.1527 47 1 3.2488 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283633272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:13 Heat of formation + Delta-G solvation = 51.067414 kcal Electronic energy + Delta-G solvation = -30559.022790 eV Core-core repulsion = 26707.469468 eV Total energy + Delta-G solvation = -3851.553322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.62241 -39.41052 -38.26998 -36.30205 -34.34561 -33.41063 -32.25241 -31.21707 -30.82566 -29.73331 -28.84042 -26.84454 -25.95747 -24.09489 -23.76857 -23.34009 -22.59051 -21.41531 -20.29506 -19.19393 -17.40013 -17.33030 -16.87005 -16.18590 -15.95868 -15.59743 -15.35097 -15.12155 -14.72653 -14.56203 -14.31309 -13.79563 -13.59250 -13.51904 -13.34068 -13.28713 -13.12159 -12.63854 -12.52883 -12.27776 -12.10364 -11.88627 -11.71999 -11.44735 -11.39410 -11.29706 -11.19965 -10.88008 -10.72651 -10.40556 -10.10482 -9.87883 -9.66967 -9.47171 -9.26382 -8.97256 -8.93879 -8.87358 -8.61853 -8.18846 -6.98332 -5.81889 -3.08435 0.81268 1.10505 1.43291 1.68294 2.92663 3.31572 3.40354 3.47168 3.47635 3.72595 4.09336 4.44511 4.56048 4.62451 4.70607 4.78832 4.87636 5.10172 5.20702 5.31826 5.33023 5.43840 5.47961 5.51926 5.53999 5.61179 5.64003 5.77908 5.83747 5.86297 5.88136 6.03674 6.10276 6.14575 6.24277 6.24974 6.27889 6.30244 6.33777 6.34687 6.54687 6.67884 6.74224 6.80501 6.84731 6.96315 7.12479 7.66381 7.71539 8.22762 8.37833 8.45728 9.49257 10.05173 10.40966 11.41031 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.005117 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.764522 B = 5470.791261 C = 6030.769806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.051 0.949 4 C 0.109 3.891 5 N -0.587 5.587 6 C 0.076 3.924 7 C 0.557 3.443 8 O -0.535 6.535 9 C -0.100 4.100 10 C -0.089 4.089 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.108 4.108 14 C -0.006 4.006 15 C -0.001 4.001 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.487 5.487 19 C 0.091 3.909 20 C -0.158 4.158 21 N -0.719 5.719 22 C -0.231 4.231 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.934 5.934 26 Si 0.899 3.101 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.130 0.870 46 H 0.381 0.619 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 1.755 12.122 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.069 0.931 4 C -0.014 4.014 5 N -0.318 5.318 6 C -0.067 4.067 7 C 0.345 3.655 8 O -0.413 6.413 9 C -0.104 4.104 10 C -0.107 4.107 11 C -0.139 4.139 12 C -0.121 4.121 13 C -0.127 4.127 14 C -0.006 4.006 15 C -0.009 4.009 16 C -0.154 4.154 17 C -0.050 4.050 18 N -0.196 5.196 19 C -0.066 4.066 20 C -0.178 4.178 21 N -0.363 5.363 22 C -0.362 4.362 23 H 0.086 0.914 24 C -0.206 4.206 25 N -0.583 5.583 26 Si 0.730 3.270 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.161 0.839 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.148 0.852 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.910 3.117 12.063 15.317 hybrid contribution 0.605 -0.868 -0.915 1.398 sum 9.515 2.249 11.148 14.828 Atomic orbital electron populations 1.22367 0.98767 1.00847 1.00312 1.20650 0.92005 0.96194 0.86678 0.93103 1.21878 0.78513 1.01345 0.99640 1.47511 1.06653 1.21078 1.56513 1.22081 1.00230 0.86708 0.97726 1.18162 0.86155 0.82166 0.79035 1.90775 1.74407 1.33448 1.42676 1.19993 0.93730 0.94157 1.02482 1.21333 0.94634 0.96404 0.98356 1.21132 0.93846 0.98841 1.00085 1.21195 1.00096 0.92836 0.97980 1.21130 0.92533 0.98695 1.00307 1.18626 0.92827 0.91609 0.97583 1.18971 0.94722 0.92187 0.95028 1.22413 0.94852 1.00915 0.97223 1.22667 0.97791 0.87448 0.97046 1.67591 1.14148 1.29807 1.08082 1.22541 0.91975 0.97789 0.94297 1.22042 1.01832 0.92728 1.01188 1.42479 1.78163 1.10413 1.05201 1.19186 1.35972 0.93774 0.87246 0.91400 1.24631 1.02385 0.95897 0.97731 1.69614 1.51303 1.08535 1.28839 0.86310 0.77845 0.78755 0.84082 1.21812 1.21870 1.20770 0.93466 0.94355 0.92506 0.90840 0.90080 0.93604 0.88861 0.90869 0.85015 0.85364 0.85459 0.85317 0.83860 0.82566 0.83115 0.85217 0.78361 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.16 3.02 3.20 -67.93 -0.22 2.80 16 3 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 4 C 0.11 1.83 5.09 -4.04 -0.02 1.81 16 5 N -0.59 -9.77 2.73 -182.75 -0.50 -10.26 16 6 C 0.08 1.15 8.73 59.84 0.52 1.67 16 7 C 0.56 9.82 5.73 -12.40 -0.07 9.75 16 8 O -0.54 -10.90 15.22 5.31 0.08 -10.82 16 9 C -0.10 -1.55 4.87 -104.69 -0.51 -2.06 16 10 C -0.09 -1.10 7.66 -39.22 -0.30 -1.40 16 11 C -0.12 -1.25 10.02 -39.59 -0.40 -1.64 16 12 C -0.10 -1.05 10.03 -39.55 -0.40 -1.45 16 13 C -0.11 -1.31 9.63 -39.29 -0.38 -1.69 16 14 C -0.01 -0.08 5.48 -104.56 -0.57 -0.66 16 15 C 0.00 -0.01 4.34 -104.60 -0.45 -0.47 16 16 C -0.13 -2.44 8.32 -39.08 -0.33 -2.76 16 17 C 0.11 1.88 11.17 -17.61 -0.20 1.68 16 18 N -0.49 -8.25 10.34 -13.34 -0.14 -8.38 16 19 C 0.09 1.31 11.17 -17.61 -0.20 1.11 16 20 C -0.16 -2.24 9.75 -39.07 -0.38 -2.62 16 21 N -0.72 -16.37 4.56 -53.42 -0.24 -16.61 16 22 C -0.23 -5.95 9.93 -15.06 -0.15 -6.10 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.21 13.06 55.49 0.72 -25.49 16 26 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.08 1.35 7.37 -51.93 -0.38 0.97 16 35 H 0.05 0.55 7.47 -51.93 -0.39 0.16 16 36 H 0.09 1.66 5.60 -51.93 -0.29 1.37 16 37 H 0.07 1.14 5.84 -51.92 -0.30 0.84 16 38 H 0.13 1.42 6.56 -52.48 -0.34 1.07 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.14 2.93 7.81 -52.49 -0.41 2.52 16 43 H 0.16 2.62 8.06 -52.48 -0.42 2.20 16 44 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.38 8.99 5.32 -40.82 -0.22 8.77 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -31.46 387.92 -9.57 -41.03 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.53 Total: 12.87 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.79 Total: -4.93 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.16 Total: -60.75 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.46 -9.57 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283633272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.098 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds