Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47129 * 120.00161 * 2 1 3 5 5 N 1.46504 * 109.47198 * 174.99625 * 4 2 1 6 6 C 1.46491 * 120.00040 * 270.00009 * 5 4 2 7 7 C 1.34779 * 119.99250 * 90.00074 * 5 4 2 8 8 O 1.21563 * 120.00556 * 4.04239 * 7 5 4 9 9 C 1.47694 * 119.99510 * 184.05023 * 7 5 4 10 10 C 1.39470 * 120.20556 * 310.60044 * 9 7 5 11 11 C 1.37979 * 119.97179 * 180.02562 * 10 9 7 12 12 C 1.38481 * 120.39530 * 359.97438 * 11 10 9 13 13 C 1.38076 * 120.42412 * 0.02562 * 12 11 10 14 14 C 1.39175 * 120.01859 * 359.97438 * 13 12 11 15 15 C 1.48222 * 120.19808 * 179.97438 * 14 13 12 16 16 C 1.39826 * 120.91447 * 124.01439 * 15 14 13 17 17 C 1.37995 * 119.01087 * 179.80014 * 16 15 14 18 18 N 1.31903 * 120.89057 * 0.48136 * 17 16 15 19 19 C 1.31902 * 122.02469 * 359.74640 * 18 17 16 20 20 C 1.37997 * 120.89380 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47312 * 239.99726 * 2 1 3 22 22 C 1.36942 * 119.99943 * 84.99847 * 21 2 1 23 23 H 1.07999 * 119.99479 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99854 * 179.97438 * 22 21 2 25 25 N 1.31613 * 120.00183 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99528 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47178 * 90.00568 * 26 24 22 28 28 H 1.48499 * 109.46847 * 210.00437 * 26 24 22 29 29 H 1.48500 * 109.47421 * 330.00031 * 26 24 22 30 30 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46979 * 300.00528 * 1 2 3 32 32 H 1.09006 * 109.46973 * 59.99848 * 1 2 3 33 33 H 1.09000 * 109.47000 * 54.99605 * 4 2 1 34 34 H 1.08996 * 109.46592 * 295.00169 * 4 2 1 35 35 H 1.09004 * 109.47047 * 271.30794 * 6 5 4 36 36 H 1.08997 * 109.47293 * 31.31420 * 6 5 4 37 37 H 1.09008 * 109.46921 * 151.31059 * 6 5 4 38 38 H 1.08005 * 120.01030 * 359.97438 * 10 9 7 39 39 H 1.07998 * 119.79647 * 179.72011 * 11 10 9 40 40 H 1.08000 * 119.78731 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.99098 * 179.97438 * 13 12 11 42 42 H 1.07999 * 120.49375 * 359.97438 * 16 15 14 43 43 H 1.08004 * 119.55160 * 180.20026 * 17 16 15 44 44 H 1.08001 * 119.55707 * 179.97438 * 19 18 17 45 45 H 1.07994 * 120.49719 * 179.97438 * 20 19 18 46 46 H 0.97005 * 120.00739 * 265.00463 * 21 2 1 47 47 H 0.97003 * 119.99959 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2675 0.1491 1.7157 8 8 3.7505 1.0797 2.3025 9 6 5.7367 0.0876 1.5779 10 6 6.4236 -1.0818 1.9033 11 6 7.7963 -1.1338 1.7732 12 6 8.4995 -0.0302 1.3200 13 6 7.8360 1.1357 0.9932 14 6 6.4516 1.2074 1.1178 15 6 5.7354 2.4573 0.7687 16 6 4.7039 2.4544 -0.1753 17 6 4.0608 3.6398 -0.4675 18 7 4.4138 4.7652 0.1231 19 6 5.3840 4.8124 1.0154 20 6 6.0766 3.6727 1.3700 21 7 2.0184 -0.6907 -1.1961 22 6 2.1491 -0.0076 -2.3758 23 1 1.8926 1.0404 -2.4241 24 6 2.6124 -0.6619 -3.5090 25 7 2.9255 -1.9388 -3.4498 26 14 2.7914 0.2702 -5.1179 27 1 4.1537 0.8553 -5.2021 28 1 2.5815 -0.6610 -6.2554 29 1 1.7813 1.3573 -5.1754 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1584 2.1369 35 1 4.2609 -2.7776 1.3047 36 1 3.4865 -2.3581 -0.2421 37 1 5.0955 -1.7076 0.1528 38 1 5.8814 -1.9460 2.2577 39 1 8.3258 -2.0393 2.0303 40 1 9.5738 -0.0816 1.2223 41 1 8.3913 1.9923 0.6409 42 1 4.4130 1.5375 -0.6663 43 1 3.2607 3.6470 -1.1929 44 1 5.6405 5.7559 1.4742 45 1 6.8702 3.7188 2.1010 46 1 2.2490 -1.6319 -1.1527 47 1 3.2488 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283633272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = 33.264235 kcal Electronic energy + Delta-G solvation = -30559.794794 eV Core-core repulsion = 26707.469468 eV Total energy + Delta-G solvation = -3852.325326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.79865 -40.68198 -39.36158 -37.85754 -35.89003 -34.54806 -34.02848 -32.39497 -32.00833 -30.79280 -30.62133 -28.19457 -27.27212 -25.75883 -25.07246 -24.61241 -23.72936 -22.53475 -21.79826 -20.47507 -19.27836 -18.53789 -18.07550 -17.43757 -17.24456 -16.87753 -16.66355 -16.34503 -16.26232 -15.79910 -15.68103 -15.32660 -15.08428 -14.74987 -14.65378 -14.53179 -14.22431 -13.91563 -13.81430 -13.67358 -13.64416 -13.23632 -13.06297 -12.83063 -12.75488 -12.72440 -12.60684 -12.51377 -12.20715 -12.13318 -11.89113 -11.62103 -11.11330 -10.95749 -10.72005 -10.52447 -10.12712 -9.90620 -9.65958 -9.56243 -8.92881 -7.91386 -5.15336 -0.25092 0.14758 0.18429 0.57723 1.43382 1.45678 1.51638 1.65361 2.11532 2.55806 2.70275 2.87942 3.35634 3.42868 3.50502 3.51755 3.85141 3.86977 3.97291 4.06358 4.09951 4.16064 4.20671 4.26714 4.37913 4.44410 4.46406 4.58837 4.60821 4.64314 4.68792 4.71270 4.82871 4.84383 4.91624 4.96208 5.07354 5.15559 5.17281 5.24133 5.34021 5.36659 5.43906 5.45852 5.54824 5.65548 5.73116 5.91109 6.31001 6.40505 6.97065 7.13197 7.40131 8.12071 8.41056 9.31332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.005117 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.764522 B = 5470.791261 C = 6030.769806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.021 0.979 4 C 0.115 3.885 5 N -0.589 5.589 6 C 0.082 3.918 7 C 0.555 3.445 8 O -0.573 6.573 9 C -0.130 4.130 10 C -0.092 4.092 11 C -0.112 4.112 12 C -0.093 4.093 13 C -0.111 4.111 14 C -0.034 4.034 15 C -0.004 4.004 16 C -0.155 4.155 17 C 0.089 3.911 18 N -0.505 5.505 19 C 0.092 3.908 20 C -0.153 4.153 21 N -0.720 5.720 22 C -0.223 4.223 23 H 0.059 0.941 24 C -0.059 4.059 25 N -0.957 5.957 26 Si 0.948 3.052 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.278 1.278 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.192 0.808 45 H 0.165 0.835 46 H 0.378 0.622 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.115 1.309 13.886 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.039 0.961 4 C -0.008 4.008 5 N -0.319 5.319 6 C -0.061 4.061 7 C 0.344 3.656 8 O -0.454 6.454 9 C -0.133 4.133 10 C -0.111 4.111 11 C -0.130 4.130 12 C -0.111 4.111 13 C -0.129 4.129 14 C -0.035 4.035 15 C -0.012 4.012 16 C -0.175 4.175 17 C -0.066 4.066 18 N -0.215 5.215 19 C -0.064 4.064 20 C -0.173 4.173 21 N -0.363 5.363 22 C -0.355 4.355 23 H 0.077 0.923 24 C -0.252 4.252 25 N -0.609 5.609 26 Si 0.780 3.220 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.204 1.204 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.163 0.837 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.164 0.836 42 H 0.125 0.875 43 H 0.165 0.835 44 H 0.208 0.792 45 H 0.182 0.818 46 H 0.213 0.787 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.354 2.667 13.834 18.094 hybrid contribution -0.083 -0.702 -1.358 1.531 sum 11.271 1.965 12.476 16.928 Atomic orbital electron populations 1.22217 0.97007 1.01505 1.00574 1.20723 0.93123 0.94695 0.86819 0.96068 1.21784 0.79045 1.02093 0.97891 1.47598 1.06564 1.21505 1.56225 1.22074 0.99026 0.86980 0.97973 1.18613 0.87424 0.81400 0.78147 1.90728 1.75441 1.34736 1.44510 1.19980 0.92334 0.95909 1.05123 1.21562 0.95850 0.95624 0.98035 1.21595 0.92944 1.00224 0.98250 1.21677 1.01943 0.91685 0.95751 1.21405 0.91224 1.00332 0.99933 1.18792 0.94230 0.91084 0.99388 1.19261 0.93930 0.93977 0.94063 1.22115 0.96905 0.99483 0.98967 1.22578 0.98193 0.88015 0.97789 1.67618 1.15509 1.29159 1.09222 1.23254 0.90599 0.99604 0.92992 1.22437 1.02220 0.91654 1.00965 1.42503 1.78255 1.10193 1.05342 1.19340 1.34352 0.93490 0.88360 0.92259 1.25151 1.03383 0.96680 1.00024 1.69720 1.52763 1.09377 1.28992 0.85509 0.77493 0.77758 0.81285 1.22124 1.22121 1.20375 0.92513 0.91850 0.94472 0.88628 0.89858 0.89692 0.91519 0.91441 0.83673 0.81707 0.81690 0.83556 0.87468 0.83451 0.79160 0.81763 0.78668 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.49 71.98 0.68 -4.78 16 2 C 0.16 6.28 3.20 44.99 0.14 6.43 16 3 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 4 C 0.12 3.89 5.09 86.38 0.44 4.33 16 5 N -0.59 -19.91 2.73 -850.37 -2.32 -22.23 16 6 C 0.08 2.48 8.73 127.77 1.12 3.59 16 7 C 0.55 20.04 5.73 86.74 0.50 20.54 16 8 O -0.57 -24.25 15.22 -3.91 -0.06 -24.31 16 9 C -0.13 -3.99 4.87 -19.91 -0.10 -4.09 16 10 C -0.09 -2.09 7.66 22.51 0.17 -1.91 16 11 C -0.11 -1.87 10.02 22.27 0.22 -1.65 16 12 C -0.09 -1.51 10.03 22.29 0.22 -1.29 16 13 C -0.11 -2.40 9.63 22.46 0.22 -2.19 16 14 C -0.03 -1.01 5.48 -19.82 -0.11 -1.12 16 15 C 0.00 -0.13 4.34 -19.85 -0.09 -0.22 16 16 C -0.15 -6.03 8.32 22.60 0.19 -5.84 16 17 C 0.09 3.39 11.17 84.62 0.95 4.34 16 18 N -0.51 -17.47 10.34 -196.12 -2.03 -19.50 16 19 C 0.09 2.55 11.17 84.63 0.95 3.49 16 20 C -0.15 -4.16 9.75 22.60 0.22 -3.94 16 21 N -0.72 -33.98 4.56 -322.93 -1.47 -35.46 16 22 C -0.22 -11.99 9.93 84.03 0.83 -11.16 16 23 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 24 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 25 N -0.96 -54.95 13.06 21.65 0.28 -54.67 16 26 Si 0.95 46.01 29.55 68.60 2.03 48.04 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.10 2.79 8.07 -2.39 -0.02 2.77 16 34 H 0.08 2.79 7.37 -2.39 -0.02 2.78 16 35 H 0.08 1.87 7.47 -2.38 -0.02 1.85 16 36 H 0.07 2.40 5.60 -2.39 -0.01 2.39 16 37 H 0.07 2.11 5.84 -2.38 -0.01 2.10 16 38 H 0.15 2.75 6.56 -2.91 -0.02 2.73 16 39 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.11 4.87 7.81 -2.91 -0.02 4.84 16 43 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 44 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 46 H 0.38 18.36 5.32 -92.70 -0.49 17.87 16 47 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -72.16 387.92 3.94 -68.22 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: 0.49 Total: 38.17 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 7.02 Total: 1.74 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -5.54 Total: -131.86 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.16 3.94 -68.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283633272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.487 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds