Wall clock time and date at job start Tue Mar 31 2020 23:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35848 * 117.00262 * 2 1 4 4 N 1.30813 * 126.05848 * 0.03571 * 3 2 1 5 5 N 1.39917 * 108.87830 * 179.97438 * 4 3 2 6 6 C 1.46506 * 125.68349 * 179.97438 * 5 4 3 7 7 C 1.34158 * 108.62514 * 0.22725 * 5 4 3 8 8 C 1.38135 * 107.50840 * 359.64027 * 7 5 4 9 9 C 1.47246 * 126.44461 * 180.17953 * 8 7 5 10 10 O 1.21622 * 119.99789 * 180.21580 * 9 8 7 11 11 N 1.34780 * 120.00214 * 0.20908 * 9 8 7 12 12 C 1.46502 * 119.99931 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47214 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47293 * 65.00136 * 13 12 11 15 15 C 1.52998 * 109.47321 * 185.00034 * 13 12 11 16 16 N 1.46908 * 109.47246 * 305.00080 * 13 12 11 17 17 C 1.46895 * 110.99992 * 154.99781 * 16 13 12 18 18 C 1.50703 * 109.46823 * 179.97438 * 17 16 13 19 19 O 1.21290 * 119.99906 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99883 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99851 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00154 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99847 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99883 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00022 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47117 * 89.99800 * 25 23 21 27 27 H 1.48500 * 109.46841 * 209.99226 * 25 23 21 28 28 H 1.48495 * 109.47201 * 329.99774 * 25 23 21 29 29 H 1.08999 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46731 * 299.99135 * 1 2 3 31 31 H 1.08997 * 109.47632 * 59.98986 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.03113 * 6 5 4 33 33 H 1.09004 * 109.47073 * 210.02602 * 6 5 4 34 34 H 1.09000 * 109.47212 * 330.02685 * 6 5 4 35 35 H 1.08002 * 126.24165 * 179.75634 * 7 5 4 36 36 H 0.96995 * 119.99928 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47239 * 300.00265 * 12 11 9 38 38 H 1.09005 * 109.46895 * 60.00135 * 12 11 9 39 39 H 1.09000 * 109.47218 * 60.00215 * 15 13 12 40 40 H 1.09000 * 109.47445 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47135 * 299.99854 * 15 13 12 42 42 H 1.00902 * 110.99687 * 31.04248 * 16 13 12 43 43 H 1.09000 * 109.47463 * 299.99848 * 17 16 13 44 44 H 1.09003 * 109.47051 * 60.00583 * 17 16 13 45 45 H 0.97003 * 120.00465 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99898 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 0.0007 5 7 2.4283 3.3799 0.0010 6 6 2.1705 4.8222 0.0012 7 6 3.6386 2.8012 -0.0045 8 6 3.4452 1.4334 -0.0001 9 6 4.4956 0.4015 0.0001 10 8 4.1912 -0.7760 0.0003 11 7 5.7943 0.7618 -0.0001 12 6 6.8393 -0.2650 -0.0004 13 6 8.2140 0.4065 0.0001 14 1 8.3498 0.9557 0.9318 15 6 9.3030 -0.6608 -0.1260 16 7 8.3056 1.3358 -1.1340 17 6 9.2871 2.3959 -0.8680 18 6 9.3536 3.3272 -2.0510 19 8 8.6519 3.1277 -3.0200 20 7 10.1919 4.3823 -2.0317 21 6 10.2520 5.2298 -3.1077 22 1 9.6272 5.0522 -3.9705 23 6 11.1159 6.3179 -3.0876 24 7 11.1738 7.1300 -4.1191 25 14 12.1960 6.6255 -1.5948 26 1 13.4900 5.9172 -1.7657 27 1 12.4441 8.0829 -1.4553 28 1 11.5126 6.1208 -0.3769 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8898 32 1 2.1070 5.1797 1.0289 33 1 2.9826 5.3365 -0.5128 34 1 1.2303 5.0233 -0.5123 35 1 4.5904 3.3116 -0.0094 36 1 6.0371 1.7009 0.0001 37 1 6.7385 -0.8864 0.8895 38 1 6.7382 -0.8859 -0.8906 39 1 9.1673 -1.2100 -1.0577 40 1 10.2824 -0.1824 -0.1261 41 1 9.2351 -1.3503 0.7155 42 1 7.4020 1.7268 -1.3549 43 1 8.9872 2.9548 0.0184 44 1 10.2677 1.9497 -0.7018 45 1 10.7528 4.5420 -1.2566 46 1 11.7772 7.8894 -4.1052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317256729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:01 Heat of formation + Delta-G solvation = -47.541187 kcal Electronic energy + Delta-G solvation = -29134.516872 eV Core-core repulsion = 24867.838297 eV Total energy + Delta-G solvation = -4266.678575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58198 -40.56067 -40.09626 -39.36650 -38.08917 -35.97052 -34.92250 -33.87517 -33.70085 -32.33214 -31.29999 -28.86664 -28.23747 -27.73835 -26.62484 -25.41541 -23.65309 -22.04116 -21.55866 -21.32417 -21.21198 -20.28121 -19.26220 -18.12624 -17.67516 -17.40434 -17.05709 -16.98237 -16.78601 -16.48397 -16.28577 -16.03022 -15.94259 -15.58701 -15.41261 -15.04527 -14.85328 -14.39246 -14.19294 -14.03607 -13.67460 -13.58347 -13.53227 -13.39393 -13.26421 -12.93297 -12.88677 -12.75801 -12.49912 -12.36589 -12.19516 -12.00051 -11.93928 -11.80867 -11.47162 -11.01342 -10.37881 -10.31892 -10.20548 -10.11545 -9.54984 -9.30058 -8.37292 -5.98032 0.41703 1.07137 1.20830 1.33315 1.39888 1.48214 2.00974 2.07806 2.26838 2.36601 2.41282 2.75172 3.19748 3.33862 3.42191 3.70340 3.79680 4.15936 4.16932 4.21268 4.26795 4.29666 4.30451 4.42194 4.44719 4.48962 4.52209 4.58321 4.63786 4.70582 4.70674 4.73833 4.92329 4.99509 5.11702 5.37405 5.52868 5.57291 5.77829 5.95428 6.09781 6.10813 6.40150 6.41246 6.58685 6.64199 6.93209 7.28598 7.45116 8.02211 8.80278 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.002605 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.644848 B =10744.269960 C =12514.708779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.293 3.707 4 N -0.369 5.369 5 N -0.340 5.340 6 C 0.086 3.914 7 C 0.149 3.851 8 C -0.331 4.331 9 C 0.596 3.404 10 O -0.580 6.580 11 N -0.719 5.719 12 C 0.124 3.876 13 C 0.082 3.918 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.686 5.686 17 C 0.060 3.940 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.325 4.325 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.225 1.225 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.406 0.594 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.344 0.656 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -6.638 19.024 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.089 3.911 4 N -0.209 5.209 5 N -0.120 5.120 6 C -0.052 4.052 7 C -0.006 4.006 8 C -0.346 4.346 9 C 0.385 3.615 10 O -0.461 6.461 11 N -0.372 5.372 12 C 0.000 4.000 13 C -0.027 4.027 14 H 0.096 0.904 15 C -0.197 4.197 16 N -0.322 5.322 17 C -0.072 4.072 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.454 4.454 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.148 1.148 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.247 0.753 36 H 0.242 0.758 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.165 0.835 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.226 0.774 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.194 -7.427 17.933 24.047 hybrid contribution 0.624 1.119 0.413 1.346 sum -13.571 -6.308 18.347 23.676 Atomic orbital electron populations 1.23239 0.75950 1.05302 1.02277 1.86447 1.23808 1.21298 1.88418 1.20705 0.90760 0.85539 0.94124 1.77259 1.14363 0.94747 1.34570 1.48158 1.02766 1.07704 1.53346 1.22513 1.06149 0.70735 1.05849 1.23630 0.92720 0.90975 0.93228 1.19750 0.91272 0.93788 1.29805 1.17258 0.82148 0.87156 0.74981 1.90766 1.82969 1.19964 1.52383 1.45683 1.04820 1.10729 1.75934 1.21553 0.85176 0.90668 1.02575 1.21837 0.93917 0.94404 0.92550 0.90386 1.21763 0.97703 0.97864 1.02366 1.60078 1.12739 1.19235 1.40133 1.21741 0.99734 0.91774 0.93938 1.21011 0.82113 0.82790 0.90380 1.90568 1.46512 1.74768 1.37972 1.42027 1.38826 1.25125 1.17274 1.18983 1.23387 1.06305 0.96768 0.92742 1.26121 0.98979 0.94902 1.01501 1.69813 1.39079 1.16322 1.32523 0.85375 0.78926 0.78708 0.78562 1.18638 1.20348 1.14771 0.85937 0.91923 0.92326 0.87981 0.85997 0.88479 0.75319 0.75780 0.89859 0.92537 0.93188 0.91715 0.90205 0.83535 0.89416 0.86868 0.77429 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 113.37 1.21 1.73 16 2 O -0.30 -8.69 9.98 -86.73 -0.87 -9.56 16 3 C 0.29 8.31 7.85 85.70 0.67 8.98 16 4 N -0.37 -9.01 11.90 -169.99 -2.02 -11.03 16 5 N -0.34 -5.88 3.97 -367.76 -1.46 -7.34 16 6 C 0.09 0.64 11.44 127.77 1.46 2.11 16 7 C 0.15 2.51 10.98 84.31 0.93 3.43 16 8 C -0.33 -8.46 6.14 -20.08 -0.12 -8.58 16 9 C 0.60 16.98 7.81 86.61 0.68 17.65 16 10 O -0.58 -21.53 16.43 1.02 0.02 -21.51 16 11 N -0.72 -15.24 4.98 -466.54 -2.32 -17.57 16 12 C 0.12 2.59 5.31 86.38 0.46 3.05 16 13 C 0.08 1.47 2.81 44.91 0.13 1.60 16 14 H 0.08 1.02 7.80 -2.39 -0.02 1.01 16 15 C -0.14 -2.35 9.41 71.98 0.68 -1.67 16 16 N -0.69 -17.50 5.93 -495.57 -2.94 -20.44 16 17 C 0.06 1.54 5.97 85.56 0.51 2.05 16 18 C 0.45 18.42 7.82 87.66 0.69 19.10 16 19 O -0.61 -31.97 15.78 -3.06 -0.05 -32.02 16 20 N -0.59 -25.65 5.09 -306.99 -1.56 -27.21 16 21 C -0.33 -18.13 10.16 84.04 0.85 -17.27 16 22 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.94 -54.86 13.96 21.66 0.30 -54.55 16 25 Si 0.96 36.53 27.74 68.60 1.90 38.43 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 28 H -0.22 -6.82 6.52 99.48 0.65 -6.17 16 29 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.23 1.71 7.46 -2.91 -0.02 1.69 16 36 H 0.41 6.44 6.29 -92.71 -0.58 5.86 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.34 9.29 6.41 -89.69 -0.58 8.72 16 43 H 0.09 1.57 8.06 -2.39 -0.02 1.56 16 44 H 0.11 2.46 7.44 -2.39 -0.02 2.45 16 45 H 0.39 13.71 5.76 -92.71 -0.53 13.17 16 46 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -91.29 392.16 -1.11 -92.40 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.71 Total: 38.64 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: 8.60 Total: 31.76 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -10.00 Total: -138.14 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -0.90 Total: -63.09 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 1.90 Total: 38.43 kcal Total: -91.29 -1.11 -92.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317256729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.855 kcal (2) G-P(sol) polarization free energy of solvation -91.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds