Wall clock time and date at job start Tue Mar 31 2020 23:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35854 * 117.00206 * 2 1 4 4 N 1.30808 * 126.05438 * 0.16542 * 3 2 1 5 5 N 1.39921 * 108.87902 * 180.29943 * 4 3 2 6 6 C 1.46501 * 125.69197 * 179.68929 * 5 4 3 7 7 C 1.34167 * 108.62371 * 359.72002 * 5 4 3 8 8 C 1.38136 * 107.50568 * 359.97438 * 7 5 4 9 9 C 1.47247 * 126.44967 * 180.02562 * 8 7 5 10 10 O 1.21616 * 120.00275 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99769 * 0.03225 * 9 8 7 12 12 C 1.46500 * 120.00048 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47060 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47056 * 294.99805 * 13 12 11 15 15 C 1.52997 * 109.46978 * 174.99741 * 13 12 11 16 16 N 1.46906 * 109.47053 * 55.00135 * 13 12 11 17 17 C 1.46898 * 110.99715 * 204.99863 * 16 13 12 18 18 C 1.50703 * 109.46771 * 179.97438 * 17 16 13 19 19 O 1.21289 * 119.99985 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00007 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99909 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00186 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00279 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47282 * 89.99975 * 25 23 21 27 27 H 1.48497 * 109.47358 * 209.99764 * 25 23 21 28 28 H 1.48499 * 109.47198 * 329.99732 * 25 23 21 29 29 H 1.09001 * 109.47102 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47138 * 300.00606 * 1 2 3 32 32 H 1.08998 * 109.47599 * 270.02927 * 6 5 4 33 33 H 1.08997 * 109.47096 * 30.03023 * 6 5 4 34 34 H 1.08997 * 109.47139 * 150.02772 * 6 5 4 35 35 H 1.07997 * 126.24915 * 180.02562 * 7 5 4 36 36 H 0.96999 * 120.00240 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47025 * 59.99517 * 12 11 9 38 38 H 1.08998 * 109.47007 * 299.99619 * 12 11 9 39 39 H 1.09000 * 109.47140 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47375 * 300.00092 * 15 13 12 41 41 H 1.09002 * 109.47045 * 60.00167 * 15 13 12 42 42 H 1.00896 * 110.99538 * 328.95036 * 16 13 12 43 43 H 1.08994 * 109.47005 * 299.99284 * 17 16 13 44 44 H 1.09001 * 109.47253 * 60.00251 * 17 16 13 45 45 H 0.96996 * 119.99768 * 0.02562 * 20 18 17 46 46 H 0.97003 * 120.00361 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 0.0031 5 7 2.4281 3.3800 -0.0051 6 6 2.1704 4.8222 -0.0112 7 6 3.6385 2.8013 -0.0070 8 6 3.4452 1.4336 0.0004 9 6 4.4955 0.4016 0.0019 10 8 4.1911 -0.7759 0.0083 11 7 5.7942 0.7619 -0.0038 12 6 6.8393 -0.2648 -0.0029 13 6 8.2140 0.4067 -0.0107 14 1 8.3465 0.9522 -0.9449 15 6 9.3034 -0.6601 0.1160 16 7 8.3093 1.3404 1.1194 17 6 9.2899 2.3995 0.8460 18 6 9.3594 3.3361 2.0246 19 8 8.6611 3.1403 2.9968 20 7 10.1983 4.3907 1.9988 21 6 10.2619 5.2424 3.0711 22 1 9.6394 5.0686 3.9364 23 6 11.1263 6.3299 3.0443 24 7 11.8832 6.5418 1.9912 25 14 11.2124 7.4909 4.5051 26 1 12.2443 7.0106 5.4590 27 1 11.5695 8.8533 4.0343 28 1 9.8920 7.5319 5.1834 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1025 5.1749 -1.0403 33 1 1.2324 5.0258 0.5053 34 1 2.9845 5.3389 0.4970 35 1 4.5903 3.3116 -0.0124 36 1 6.0370 1.7010 -0.0091 37 1 6.7354 -0.8897 -0.8900 38 1 6.7412 -0.8823 0.8900 39 1 10.2828 -0.1816 0.1109 40 1 9.1708 -1.2057 1.0502 41 1 9.2327 -1.3529 -0.7226 42 1 7.4065 1.7322 1.3418 43 1 10.2698 1.9527 0.6783 44 1 8.9869 2.9549 -0.0416 45 1 10.7570 4.5470 1.2214 46 1 12.4864 7.3012 1.9722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317256732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:05 Heat of formation + Delta-G solvation = -20.194503 kcal Electronic energy + Delta-G solvation = -29080.058893 eV Core-core repulsion = 24814.566159 eV Total energy + Delta-G solvation = -4265.492734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73311 -39.39707 -38.47908 -38.36351 -36.85252 -34.10947 -33.68663 -33.15114 -31.42972 -31.09925 -30.35089 -28.15696 -27.03876 -26.49596 -25.68920 -23.98719 -22.76367 -21.21099 -20.58433 -20.33129 -19.36574 -18.38364 -17.91673 -17.18377 -16.54693 -16.30997 -16.08450 -15.80637 -15.44985 -15.24977 -15.19098 -15.16802 -14.57591 -14.40913 -14.08565 -13.89340 -13.51621 -13.17956 -13.07578 -12.99757 -12.77157 -12.54156 -12.37724 -12.16750 -11.90040 -11.73966 -11.66682 -11.45203 -11.42562 -11.12892 -11.09502 -10.83219 -10.43893 -10.26671 -9.89394 -9.55990 -9.41771 -9.10599 -8.69762 -8.50707 -8.14238 -8.01292 -6.46859 -3.87786 1.21730 1.89865 2.05574 2.93599 3.13790 3.22960 3.24694 3.28168 3.43691 3.84932 4.02875 4.09895 4.26360 4.37696 4.69771 4.77625 4.80991 4.94817 4.98349 5.02532 5.05554 5.08328 5.18377 5.22289 5.25232 5.31941 5.33062 5.52232 5.61212 5.67776 5.78262 5.83572 5.95152 6.02143 6.19238 6.29840 6.41215 6.47427 6.96620 7.15377 7.30824 7.50274 7.50877 7.57635 8.01080 8.31132 8.55903 9.12865 9.48925 10.00275 10.70732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002572 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.129083 B =10884.216675 C =12885.945238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.267 6.267 3 C 0.316 3.684 4 N -0.353 5.353 5 N -0.345 5.345 6 C 0.097 3.903 7 C 0.128 3.872 8 C -0.294 4.294 9 C 0.598 3.402 10 O -0.532 6.532 11 N -0.732 5.732 12 C 0.122 3.878 13 C 0.072 3.928 14 H 0.049 0.951 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.191 0.809 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.347 0.653 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 -5.891 -10.379 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.169 6.169 3 C 0.111 3.889 4 N -0.193 5.193 5 N -0.126 5.126 6 C -0.043 4.043 7 C -0.025 4.025 8 C -0.309 4.309 9 C 0.385 3.615 10 O -0.409 6.409 11 N -0.385 5.385 12 C -0.002 4.002 13 C -0.039 4.039 14 H 0.066 0.934 15 C -0.196 4.196 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.208 0.792 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.168 0.832 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.111 -6.728 -9.396 20.648 hybrid contribution 0.751 1.665 -0.427 1.876 sum -16.360 -5.063 -9.824 19.743 Atomic orbital electron populations 1.23033 0.77777 1.03775 1.01971 1.86506 1.21729 1.20418 1.88274 1.20381 0.90020 0.85262 0.93247 1.77315 1.13215 0.94560 1.34221 1.47705 1.03109 1.06654 1.55111 1.22082 1.04934 0.73234 1.04085 1.23134 0.91438 0.92149 0.95816 1.19650 0.91809 0.92492 1.26987 1.17000 0.81225 0.87507 0.75769 1.90801 1.82173 1.18027 1.49876 1.45833 1.05662 1.10044 1.77006 1.21571 0.84847 0.90637 1.03148 1.21816 0.94331 0.94883 0.92834 0.93360 1.21734 0.98014 0.97740 1.02149 1.60107 1.13067 1.18884 1.37851 1.21760 0.97770 0.92432 0.96391 1.19817 0.84807 0.83663 0.89282 1.90538 1.46149 1.74606 1.35301 1.41869 1.36415 1.23231 1.18483 1.19692 1.21921 1.04276 0.97005 0.87933 1.25257 0.96082 0.98296 0.98279 1.69608 1.25243 1.30523 1.28893 0.85867 0.78860 0.78913 0.80709 1.20355 1.20948 1.19443 0.92519 0.88008 0.92434 0.90027 0.88743 0.88361 0.79231 0.77185 0.90807 0.90278 0.92056 0.91485 0.92466 0.83169 0.89380 0.93918 0.77472 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 101.05 1.08 1.36 16 2 O -0.27 -3.76 9.98 -24.64 -0.25 -4.01 16 3 C 0.32 4.42 7.85 -16.66 -0.13 4.29 16 4 N -0.35 -4.40 11.90 30.79 0.37 -4.03 16 5 N -0.35 -3.34 3.97 -67.60 -0.27 -3.61 16 6 C 0.10 0.50 11.44 59.85 0.68 1.19 16 7 C 0.13 1.23 10.98 -16.57 -0.18 1.05 16 8 C -0.29 -3.86 6.14 -104.95 -0.64 -4.50 16 9 C 0.60 8.67 7.81 -12.60 -0.10 8.57 16 10 O -0.53 -9.65 16.43 -0.09 0.00 -9.65 16 11 N -0.73 -8.63 4.98 -61.44 -0.31 -8.94 16 12 C 0.12 1.43 5.31 -4.04 -0.02 1.41 16 13 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16 14 H 0.05 0.50 7.80 -51.93 -0.41 0.10 16 15 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 16 N -0.66 -9.92 5.93 -107.99 -0.64 -10.56 16 17 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 18 C 0.44 9.79 7.82 -10.98 -0.09 9.70 16 19 O -0.58 -15.15 15.78 5.55 0.09 -15.06 16 20 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 21 C -0.30 -8.06 9.68 -14.94 -0.14 -8.20 16 22 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 25 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.19 1.13 7.46 -52.49 -0.39 0.74 16 36 H 0.39 3.88 6.29 -40.82 -0.26 3.62 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.35 5.30 6.41 -39.29 -0.25 5.05 16 43 H 0.09 1.34 7.43 -51.93 -0.39 0.96 16 44 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 45 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -36.65 395.27 -5.47 -42.12 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.56 Total: 13.44 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 0.49 Total: 15.61 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.18 Total: -63.84 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.16 Total: -28.72 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.65 -5.47 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317256732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.929 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds