Wall clock time and date at job start Tue Mar 31 2020 23:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35854 * 117.00206 * 2 1 4 4 N 1.30808 * 126.05438 * 0.16542 * 3 2 1 5 5 N 1.39921 * 108.87902 * 180.29943 * 4 3 2 6 6 C 1.46501 * 125.69197 * 179.68929 * 5 4 3 7 7 C 1.34167 * 108.62371 * 359.72002 * 5 4 3 8 8 C 1.38136 * 107.50568 * 359.97438 * 7 5 4 9 9 C 1.47247 * 126.44967 * 180.02562 * 8 7 5 10 10 O 1.21616 * 120.00275 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99769 * 0.03225 * 9 8 7 12 12 C 1.46500 * 120.00048 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47060 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47056 * 294.99805 * 13 12 11 15 15 C 1.52997 * 109.46978 * 174.99741 * 13 12 11 16 16 N 1.46906 * 109.47053 * 55.00135 * 13 12 11 17 17 C 1.46898 * 110.99715 * 204.99863 * 16 13 12 18 18 C 1.50703 * 109.46771 * 179.97438 * 17 16 13 19 19 O 1.21289 * 119.99985 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00007 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99909 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00186 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00279 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47282 * 89.99975 * 25 23 21 27 27 H 1.48497 * 109.47358 * 209.99764 * 25 23 21 28 28 H 1.48499 * 109.47198 * 329.99732 * 25 23 21 29 29 H 1.09001 * 109.47102 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47138 * 300.00606 * 1 2 3 32 32 H 1.08998 * 109.47599 * 270.02927 * 6 5 4 33 33 H 1.08997 * 109.47096 * 30.03023 * 6 5 4 34 34 H 1.08997 * 109.47139 * 150.02772 * 6 5 4 35 35 H 1.07997 * 126.24915 * 180.02562 * 7 5 4 36 36 H 0.96999 * 120.00240 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47025 * 59.99517 * 12 11 9 38 38 H 1.08998 * 109.47007 * 299.99619 * 12 11 9 39 39 H 1.09000 * 109.47140 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47375 * 300.00092 * 15 13 12 41 41 H 1.09002 * 109.47045 * 60.00167 * 15 13 12 42 42 H 1.00896 * 110.99538 * 328.95036 * 16 13 12 43 43 H 1.08994 * 109.47005 * 299.99284 * 17 16 13 44 44 H 1.09001 * 109.47253 * 60.00251 * 17 16 13 45 45 H 0.96996 * 119.99768 * 0.02562 * 20 18 17 46 46 H 0.97003 * 120.00361 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 0.0031 5 7 2.4281 3.3800 -0.0051 6 6 2.1704 4.8222 -0.0112 7 6 3.6385 2.8013 -0.0070 8 6 3.4452 1.4336 0.0004 9 6 4.4955 0.4016 0.0019 10 8 4.1911 -0.7759 0.0083 11 7 5.7942 0.7619 -0.0038 12 6 6.8393 -0.2648 -0.0029 13 6 8.2140 0.4067 -0.0107 14 1 8.3465 0.9522 -0.9449 15 6 9.3034 -0.6601 0.1160 16 7 8.3093 1.3404 1.1194 17 6 9.2899 2.3995 0.8460 18 6 9.3594 3.3361 2.0246 19 8 8.6611 3.1403 2.9968 20 7 10.1983 4.3907 1.9988 21 6 10.2619 5.2424 3.0711 22 1 9.6394 5.0686 3.9364 23 6 11.1263 6.3299 3.0443 24 7 11.8832 6.5418 1.9912 25 14 11.2124 7.4909 4.5051 26 1 12.2443 7.0106 5.4590 27 1 11.5695 8.8533 4.0343 28 1 9.8920 7.5319 5.1834 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1025 5.1749 -1.0403 33 1 1.2324 5.0258 0.5053 34 1 2.9845 5.3389 0.4970 35 1 4.5903 3.3116 -0.0124 36 1 6.0370 1.7010 -0.0091 37 1 6.7354 -0.8897 -0.8900 38 1 6.7412 -0.8823 0.8900 39 1 10.2828 -0.1816 0.1109 40 1 9.1708 -1.2057 1.0502 41 1 9.2327 -1.3529 -0.7226 42 1 7.4065 1.7322 1.3418 43 1 10.2698 1.9527 0.6783 44 1 8.9869 2.9549 -0.0416 45 1 10.7570 4.5470 1.2214 46 1 12.4864 7.3012 1.9722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317256732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:04 Heat of formation + Delta-G solvation = -52.135748 kcal Electronic energy + Delta-G solvation = -29081.443969 eV Core-core repulsion = 24814.566159 eV Total energy + Delta-G solvation = -4266.877810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58113 -40.51959 -39.99649 -39.36415 -38.06797 -35.93248 -34.90871 -33.87169 -33.23632 -32.28812 -31.28971 -28.86369 -28.12797 -27.71747 -26.63822 -25.60340 -23.65565 -22.04146 -21.57010 -21.30700 -21.04569 -19.88916 -19.27315 -18.13215 -17.68744 -17.40331 -17.05718 -16.87195 -16.79486 -16.34063 -16.27428 -16.02666 -15.96015 -15.76062 -15.35714 -15.22127 -14.86936 -14.24308 -14.06296 -13.71136 -13.63057 -13.53147 -13.45832 -13.37414 -13.21793 -12.90943 -12.87917 -12.75246 -12.51722 -12.37028 -12.19209 -12.09803 -12.00158 -11.81677 -11.47138 -11.01411 -10.31966 -10.28644 -10.11650 -9.97104 -9.54980 -9.30097 -8.43293 -5.91128 0.41481 1.07242 1.20746 1.40082 1.44812 1.56282 2.07289 2.10659 2.31166 2.36950 2.41169 2.93003 3.24938 3.34155 3.54555 3.70263 3.79649 4.16562 4.19987 4.25442 4.28969 4.30817 4.32980 4.44758 4.45410 4.50901 4.52965 4.58527 4.67040 4.70579 4.70764 4.73915 4.91324 4.98800 5.10752 5.36350 5.44971 5.51735 5.77723 5.93631 6.10916 6.14706 6.40600 6.42786 6.58460 6.64770 7.17286 7.28205 7.61730 8.17200 8.73853 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002572 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.129083 B =10884.216675 C =12885.945238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.294 3.706 4 N -0.368 5.368 5 N -0.340 5.340 6 C 0.086 3.914 7 C 0.149 3.851 8 C -0.331 4.331 9 C 0.596 3.404 10 O -0.580 6.580 11 N -0.719 5.719 12 C 0.125 3.875 13 C 0.081 3.919 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.682 5.682 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.988 3.012 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.229 0.771 36 H 0.405 0.595 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.344 0.656 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 -4.385 -11.523 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.089 3.911 4 N -0.209 5.209 5 N -0.120 5.120 6 C -0.052 4.052 7 C -0.006 4.006 8 C -0.346 4.346 9 C 0.385 3.615 10 O -0.460 6.460 11 N -0.372 5.372 12 C 0.002 3.998 13 C -0.029 4.029 14 H 0.091 0.909 15 C -0.196 4.196 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.165 0.835 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.231 0.769 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.534 -5.186 -10.571 20.298 hybrid contribution 0.523 1.220 -0.078 1.330 sum -16.011 -3.966 -10.649 19.633 Atomic orbital electron populations 1.23242 0.75934 1.05309 1.02288 1.86450 1.23824 1.21278 1.88416 1.20691 0.90708 0.85548 0.94119 1.77253 1.14333 0.94724 1.34556 1.48158 1.02729 1.07712 1.53356 1.22510 1.06182 0.70722 1.05822 1.23617 0.92707 0.90994 0.93247 1.19745 0.91291 0.93770 1.29796 1.17259 0.82095 0.87187 0.74983 1.90762 1.82951 1.19936 1.52390 1.45698 1.04867 1.10710 1.75925 1.21536 0.85026 0.90634 1.02641 1.21835 0.94070 0.94378 0.92570 0.90891 1.21753 0.97569 0.97838 1.02461 1.60091 1.12716 1.18906 1.39996 1.21629 0.99141 0.91761 0.94297 1.20897 0.82857 0.83308 0.90321 1.90513 1.47397 1.75474 1.37526 1.41923 1.37251 1.23743 1.18101 1.19619 1.22806 1.05951 0.97553 0.90412 1.25959 0.95364 0.99155 1.00660 1.69661 1.25372 1.31038 1.29977 0.84991 0.78560 0.77428 0.77765 1.20113 1.19614 1.19675 0.91939 0.85931 0.92281 0.88073 0.88375 0.85984 0.75439 0.75833 0.89865 0.92326 0.92115 0.92955 0.90141 0.83543 0.87892 0.90486 0.76920 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 113.37 1.21 1.73 16 2 O -0.30 -8.75 9.98 -86.79 -0.87 -9.62 16 3 C 0.29 8.40 7.85 85.70 0.67 9.08 16 4 N -0.37 -9.05 11.90 -169.99 -2.02 -11.08 16 5 N -0.34 -5.97 3.97 -367.78 -1.46 -7.43 16 6 C 0.09 0.66 11.44 127.77 1.46 2.12 16 7 C 0.15 2.60 10.98 84.31 0.93 3.52 16 8 C -0.33 -8.64 6.14 -20.08 -0.12 -8.76 16 9 C 0.60 17.44 7.81 86.61 0.68 18.12 16 10 O -0.58 -21.85 16.43 1.04 0.02 -21.83 16 11 N -0.72 -16.18 4.98 -466.55 -2.32 -18.50 16 12 C 0.13 2.80 5.31 86.38 0.46 3.26 16 13 C 0.08 1.65 2.81 44.91 0.13 1.78 16 14 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 15 C -0.14 -2.67 9.41 71.98 0.68 -1.99 16 16 N -0.68 -19.02 5.93 -495.58 -2.94 -21.96 16 17 C 0.06 1.89 5.97 85.56 0.51 2.41 16 18 C 0.44 19.18 7.82 87.66 0.69 19.86 16 19 O -0.62 -32.51 15.78 -3.06 -0.05 -32.56 16 20 N -0.57 -27.40 5.29 -306.98 -1.62 -29.02 16 21 C -0.33 -17.82 9.68 84.04 0.81 -17.01 16 22 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -47.51 13.05 21.66 0.28 -47.23 16 25 Si 0.99 41.31 29.55 68.60 2.03 43.33 16 26 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.23 1.92 7.46 -2.91 -0.02 1.90 16 36 H 0.41 7.09 6.29 -92.71 -0.58 6.51 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.34 9.93 6.41 -89.70 -0.58 9.36 16 43 H 0.10 2.82 7.43 -2.39 -0.02 2.80 16 44 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 45 H 0.40 17.93 7.90 -92.71 -0.73 17.20 16 46 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -82.01 395.27 -1.24 -83.25 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.85 Total: 38.65 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 8.56 Total: 33.99 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -10.08 Total: -135.21 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -0.90 Total: -64.01 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -82.01 -1.24 -83.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317256732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.115 kcal (2) G-P(sol) polarization free energy of solvation -82.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds