Wall clock time and date at job start Tue Mar 31 2020 22:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.53003 * 109.46920 * 119.99757 * 2 1 3 5 5 C 1.53005 * 109.46696 * 184.99757 * 4 2 1 6 6 N 1.46505 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99722 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00316 * 359.97438 * 7 6 5 9 9 C 1.48176 * 119.99591 * 179.71962 * 7 6 5 10 10 C 1.39102 * 119.66938 * 180.27135 * 9 7 6 11 11 C 1.39722 * 118.91891 * 179.97438 * 10 9 7 12 12 C 1.48369 * 120.87160 * 179.97438 * 11 10 9 13 13 C 1.39355 * 120.12200 * 359.72520 * 12 11 10 14 14 C 1.38016 * 119.87681 * 179.72358 * 13 12 11 15 15 C 1.38331 * 120.11967 * 0.54759 * 14 13 12 16 16 C 1.38321 * 120.24571 * 359.72752 * 15 14 13 17 17 C 1.38017 * 120.12454 * 359.97438 * 16 15 14 18 18 C 1.39730 * 118.25499 * 0.02562 * 11 10 9 19 19 C 1.38313 * 119.21627 * 359.97438 * 18 11 10 20 20 N 1.31575 * 121.02776 * 359.74707 * 19 18 11 21 21 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 22 22 C 1.36933 * 119.99657 * 85.00098 * 21 2 1 23 23 H 1.08002 * 120.00372 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99686 * 180.02562 * 22 21 2 25 25 N 1.31621 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99850 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47263 * 59.99876 * 26 24 22 28 28 H 1.48505 * 109.47018 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46824 * 299.99805 * 26 24 22 30 30 H 1.08995 * 109.46839 * 60.00098 * 1 2 3 31 31 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46376 * 300.00234 * 1 2 3 33 33 H 1.09003 * 109.47221 * 65.00312 * 4 2 1 34 34 H 1.08993 * 109.47355 * 304.99924 * 4 2 1 35 35 H 1.08995 * 109.47418 * 60.00346 * 5 4 2 36 36 H 1.09001 * 109.47199 * 299.99888 * 5 4 2 37 37 H 0.97000 * 119.99795 * 359.97438 * 6 5 4 38 38 H 1.08008 * 120.53898 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.06332 * 359.97438 * 13 12 11 40 40 H 1.07992 * 119.94524 * 180.27518 * 14 13 12 41 41 H 1.07995 * 119.87448 * 179.73990 * 15 14 13 42 42 H 1.08001 * 119.93702 * 179.97438 * 16 15 14 43 43 H 1.08002 * 120.06356 * 180.02562 * 17 16 15 44 44 H 1.08005 * 120.38790 * 180.02562 * 18 11 10 45 45 H 1.07999 * 119.48871 * 179.97438 * 19 18 11 46 46 H 0.97005 * 119.99839 * 265.00439 * 21 2 1 47 47 H 0.97005 * 119.99513 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3398 2.7752 8 8 6.1600 -0.7990 2.0225 9 6 5.8676 -2.0335 3.9880 10 6 7.2318 -2.0610 4.2585 11 6 7.6798 -2.7190 5.4067 12 6 9.1252 -2.7755 5.7368 13 6 10.0587 -2.1731 4.8956 14 6 11.4015 -2.2238 5.2105 15 6 11.8223 -2.8808 6.3527 16 6 10.9005 -3.4854 7.1883 17 6 9.5547 -3.4356 6.8864 18 6 6.7309 -3.3234 6.2355 19 6 5.3924 -3.2502 5.8947 20 7 5.0027 -2.6179 4.8086 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0076 -2.3757 23 1 1.8918 1.0402 -2.4244 24 6 2.6112 -0.6622 -3.5092 25 7 2.9242 -1.9393 -3.4500 26 14 2.7903 0.2698 -5.1182 27 1 3.7464 1.3915 -4.9368 28 1 3.2991 -0.6487 -6.1684 29 1 1.4683 0.8076 -5.5285 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.8533 0.4369 1.3573 36 1 3.9994 -1.0729 0.4260 37 1 3.4259 -1.7358 3.1106 38 1 7.9332 -1.5808 3.5921 39 1 9.7316 -1.6640 4.0010 40 1 12.1254 -1.7535 4.5617 41 1 12.8743 -2.9216 6.5931 42 1 11.2346 -3.9973 8.0787 43 1 8.8358 -3.9076 7.5397 44 1 7.0390 -3.8409 7.1320 45 1 4.6553 -3.7161 6.5318 46 1 2.2489 -1.6319 -1.1525 47 1 3.2476 -2.3966 -4.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317409312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:49 Heat of formation + Delta-G solvation = 29.054690 kcal Electronic energy + Delta-G solvation = -27210.236341 eV Core-core repulsion = 23357.728476 eV Total energy + Delta-G solvation = -3852.507866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94531 -39.52327 -38.68854 -36.53771 -34.50699 -33.95956 -32.26566 -31.99706 -31.15551 -30.02324 -29.20976 -28.05976 -25.24670 -24.50794 -23.77206 -22.94774 -22.09937 -21.90235 -20.49994 -19.69160 -18.36044 -17.39523 -17.08053 -16.80673 -16.10002 -15.66178 -15.53117 -15.42500 -14.89789 -14.79436 -14.58772 -14.24017 -14.06508 -13.78016 -13.60292 -13.52903 -13.42264 -13.23806 -12.80260 -12.47270 -12.40211 -11.99249 -11.71668 -11.50174 -11.30928 -11.03788 -10.87151 -10.78024 -10.70025 -10.60977 -10.35469 -10.21391 -9.95360 -9.65721 -9.58375 -9.51030 -9.38932 -8.87230 -8.79218 -8.74698 -6.90285 -5.70174 -2.98741 0.10884 0.53329 0.96826 1.44735 2.72907 3.17988 3.39429 3.49000 3.53372 3.54179 3.77881 3.91736 4.06319 4.27534 4.51041 4.55022 4.64992 4.65989 4.69092 4.74450 4.96294 5.10895 5.15493 5.28200 5.34281 5.41790 5.45828 5.60021 5.60812 5.61820 5.66098 5.75089 5.92692 6.00789 6.07942 6.12810 6.16064 6.22453 6.24877 6.39427 6.44446 6.51102 6.51787 6.71319 6.75672 6.91423 7.11222 7.40192 7.74637 7.75999 8.32193 8.48171 9.59358 10.16467 10.51162 11.52379 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.001987 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.881039 B =14089.406700 C =15487.585688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.120 3.880 6 N -0.705 5.705 7 C 0.563 3.437 8 O -0.530 6.530 9 C 0.092 3.908 10 C -0.107 4.107 11 C -0.006 4.006 12 C -0.055 4.055 13 C -0.100 4.100 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.150 4.150 19 C 0.104 3.896 20 N -0.461 5.461 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.407 0.593 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.141 0.859 45 H 0.165 0.835 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 -4.347 27.368 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.347 3.653 8 O -0.406 6.406 9 C -0.046 4.046 10 C -0.128 4.128 11 C -0.014 4.014 12 C -0.055 4.055 13 C -0.118 4.118 14 C -0.135 4.135 15 C -0.130 4.130 16 C -0.139 4.139 17 C -0.121 4.121 18 C -0.170 4.170 19 C -0.055 4.055 20 N -0.172 5.172 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.242 0.758 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.182 0.818 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.061 -3.759 26.403 29.270 hybrid contribution 0.716 -0.202 -0.397 0.843 sum 12.777 -3.962 26.006 29.245 Atomic orbital electron populations 1.22420 0.99120 1.00844 0.99932 1.20159 0.91892 0.95573 0.86010 0.93266 1.22061 0.93722 1.01947 0.99366 1.21547 0.94651 0.97191 0.86885 1.45963 1.06870 1.55477 1.27223 1.17823 0.83152 0.80290 0.84058 1.90821 1.55595 1.45680 1.48456 1.21220 0.90433 0.97658 0.95252 1.22207 0.96212 0.97701 0.96637 1.19114 0.92691 0.95683 0.93887 1.18648 0.90899 0.99969 0.96005 1.21391 0.92959 0.98265 0.99189 1.21170 0.95665 0.99331 0.97366 1.21310 0.99851 0.97183 0.94677 1.21110 0.92906 0.99977 0.99913 1.21226 0.96185 0.98498 0.96160 1.22391 0.93992 1.00060 1.00552 1.22718 0.94366 0.95203 0.93228 1.67543 1.38833 1.07093 1.03774 1.42450 1.78092 1.10655 1.05333 1.19179 1.36514 0.93812 0.87346 0.91261 1.24731 1.02245 0.95967 0.98036 1.69650 1.50905 1.08642 1.28916 0.86291 0.77695 0.78646 0.83693 1.21280 1.21786 1.21389 0.92746 0.93510 0.94567 0.91486 0.91815 0.91566 0.89466 0.75764 0.83140 0.85117 0.85418 0.85768 0.85620 0.85524 0.84104 0.81763 0.78274 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.40 2.89 -67.93 -0.20 3.20 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 5 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 6 N -0.71 -10.74 5.55 -61.14 -0.34 -11.08 16 7 C 0.56 9.28 7.81 -12.18 -0.10 9.18 16 8 O -0.53 -10.51 16.32 5.35 0.09 -10.42 16 9 C 0.09 1.25 6.75 -83.06 -0.56 0.69 16 10 C -0.11 -1.29 9.02 -38.71 -0.35 -1.64 16 11 C -0.01 -0.06 5.91 -104.61 -0.62 -0.68 16 12 C -0.06 -0.49 5.88 -104.90 -0.62 -1.11 16 13 C -0.10 -0.88 9.45 -39.25 -0.37 -1.25 16 14 C -0.12 -0.86 10.03 -39.63 -0.40 -1.26 16 15 C -0.11 -0.72 10.04 -39.52 -0.40 -1.12 16 16 C -0.12 -0.76 10.03 -39.63 -0.40 -1.15 16 17 C -0.10 -0.72 9.45 -39.25 -0.37 -1.09 16 18 C -0.15 -1.17 9.51 -39.00 -0.37 -1.54 16 19 C 0.10 0.89 11.17 -17.63 -0.20 0.69 16 20 N -0.46 -5.41 9.53 -9.88 -0.09 -5.51 16 21 N -0.72 -17.96 4.57 -53.42 -0.24 -18.20 16 22 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 26 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.85 7.75 -51.93 -0.40 1.45 16 37 H 0.41 5.29 7.80 -40.82 -0.32 4.98 16 38 H 0.15 1.80 5.92 -52.48 -0.31 1.49 16 39 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.13 0.61 6.29 -52.49 -0.33 0.28 16 44 H 0.14 0.65 6.33 -52.48 -0.33 0.32 16 45 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 47 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -34.04 396.67 -10.43 -44.47 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.54 Total: 11.84 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.98 Total: -7.06 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.05 Total: -62.66 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.04 -10.43 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317409312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.529 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds