Wall clock time and date at job start Tue Mar 31 2020 22:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.53003 * 109.46920 * 119.99757 * 2 1 3 5 5 C 1.53005 * 109.46696 * 184.99757 * 4 2 1 6 6 N 1.46505 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99722 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00316 * 359.97438 * 7 6 5 9 9 C 1.48176 * 119.99591 * 179.71962 * 7 6 5 10 10 C 1.39102 * 119.66938 * 180.27135 * 9 7 6 11 11 C 1.39722 * 118.91891 * 179.97438 * 10 9 7 12 12 C 1.48369 * 120.87160 * 179.97438 * 11 10 9 13 13 C 1.39355 * 120.12200 * 359.72520 * 12 11 10 14 14 C 1.38016 * 119.87681 * 179.72358 * 13 12 11 15 15 C 1.38331 * 120.11967 * 0.54759 * 14 13 12 16 16 C 1.38321 * 120.24571 * 359.72752 * 15 14 13 17 17 C 1.38017 * 120.12454 * 359.97438 * 16 15 14 18 18 C 1.39730 * 118.25499 * 0.02562 * 11 10 9 19 19 C 1.38313 * 119.21627 * 359.97438 * 18 11 10 20 20 N 1.31575 * 121.02776 * 359.74707 * 19 18 11 21 21 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 22 22 C 1.36933 * 119.99657 * 85.00098 * 21 2 1 23 23 H 1.08002 * 120.00372 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99686 * 180.02562 * 22 21 2 25 25 N 1.31621 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99850 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47263 * 59.99876 * 26 24 22 28 28 H 1.48505 * 109.47018 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46824 * 299.99805 * 26 24 22 30 30 H 1.08995 * 109.46839 * 60.00098 * 1 2 3 31 31 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46376 * 300.00234 * 1 2 3 33 33 H 1.09003 * 109.47221 * 65.00312 * 4 2 1 34 34 H 1.08993 * 109.47355 * 304.99924 * 4 2 1 35 35 H 1.08995 * 109.47418 * 60.00346 * 5 4 2 36 36 H 1.09001 * 109.47199 * 299.99888 * 5 4 2 37 37 H 0.97000 * 119.99795 * 359.97438 * 6 5 4 38 38 H 1.08008 * 120.53898 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.06332 * 359.97438 * 13 12 11 40 40 H 1.07992 * 119.94524 * 180.27518 * 14 13 12 41 41 H 1.07995 * 119.87448 * 179.73990 * 15 14 13 42 42 H 1.08001 * 119.93702 * 179.97438 * 16 15 14 43 43 H 1.08002 * 120.06356 * 180.02562 * 17 16 15 44 44 H 1.08005 * 120.38790 * 180.02562 * 18 11 10 45 45 H 1.07999 * 119.48871 * 179.97438 * 19 18 11 46 46 H 0.97005 * 119.99839 * 265.00439 * 21 2 1 47 47 H 0.97005 * 119.99513 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3398 2.7752 8 8 6.1600 -0.7990 2.0225 9 6 5.8676 -2.0335 3.9880 10 6 7.2318 -2.0610 4.2585 11 6 7.6798 -2.7190 5.4067 12 6 9.1252 -2.7755 5.7368 13 6 10.0587 -2.1731 4.8956 14 6 11.4015 -2.2238 5.2105 15 6 11.8223 -2.8808 6.3527 16 6 10.9005 -3.4854 7.1883 17 6 9.5547 -3.4356 6.8864 18 6 6.7309 -3.3234 6.2355 19 6 5.3924 -3.2502 5.8947 20 7 5.0027 -2.6179 4.8086 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0076 -2.3757 23 1 1.8918 1.0402 -2.4244 24 6 2.6112 -0.6622 -3.5092 25 7 2.9242 -1.9393 -3.4500 26 14 2.7903 0.2698 -5.1182 27 1 3.7464 1.3915 -4.9368 28 1 3.2991 -0.6487 -6.1684 29 1 1.4683 0.8076 -5.5285 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.8533 0.4369 1.3573 36 1 3.9994 -1.0729 0.4260 37 1 3.4259 -1.7358 3.1106 38 1 7.9332 -1.5808 3.5921 39 1 9.7316 -1.6640 4.0010 40 1 12.1254 -1.7535 4.5617 41 1 12.8743 -2.9216 6.5931 42 1 11.2346 -3.9973 8.0787 43 1 8.8358 -3.9076 7.5397 44 1 7.0390 -3.8409 7.1320 45 1 4.6553 -3.7161 6.5318 46 1 2.2489 -1.6319 -1.1525 47 1 3.2476 -2.3966 -4.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317409312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:48 Heat of formation + Delta-G solvation = 7.311012 kcal Electronic energy + Delta-G solvation = -27211.179218 eV Core-core repulsion = 23357.728476 eV Total energy + Delta-G solvation = -3853.450742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81920 -40.45972 -39.54626 -38.14965 -35.96179 -34.80736 -34.09981 -32.83738 -31.80319 -31.03151 -30.59755 -29.58111 -26.30034 -25.68655 -25.18748 -24.05420 -22.96715 -22.69304 -21.77891 -21.08740 -19.42116 -19.08911 -18.14037 -17.63914 -17.00929 -16.78957 -16.62695 -16.49533 -16.35560 -15.78116 -15.49348 -15.31703 -15.30968 -15.05261 -15.01468 -14.39419 -14.30580 -14.14577 -14.11015 -13.77533 -13.57410 -13.24966 -13.13932 -12.79341 -12.63314 -12.33691 -12.26603 -12.22719 -12.14041 -11.87237 -11.71567 -11.60232 -11.47482 -11.37110 -10.93452 -10.66663 -10.41206 -10.09413 -9.91838 -9.39849 -8.97615 -7.91863 -5.18843 -0.60788 -0.29624 0.44087 0.79713 1.45407 1.48944 1.54305 1.65901 1.98579 2.57395 2.68088 3.01161 3.05955 3.34570 3.41802 3.60640 3.85721 3.90108 3.90615 3.97473 4.00307 4.04567 4.21000 4.24072 4.34458 4.41192 4.51699 4.54197 4.64335 4.65927 4.69349 4.74643 4.87555 4.98963 5.01315 5.03182 5.09723 5.10194 5.19197 5.36029 5.39393 5.46773 5.53049 5.54208 5.56437 5.59385 5.61837 6.00932 6.30678 6.34838 6.74665 7.08441 7.36469 8.14452 8.36045 9.31512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.001987 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.881039 B =14089.406700 C =15487.585688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.045 0.955 4 C -0.115 4.115 5 C 0.131 3.869 6 N -0.693 5.693 7 C 0.557 3.443 8 O -0.577 6.577 9 C 0.068 3.932 10 C -0.122 4.122 11 C -0.009 4.009 12 C -0.076 4.076 13 C -0.124 4.124 14 C -0.130 4.130 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.101 4.101 18 C -0.130 4.130 19 C 0.105 3.895 20 N -0.474 5.474 21 N -0.735 5.735 22 C -0.233 4.233 23 H 0.075 0.925 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.969 3.031 27 H -0.282 1.282 28 H -0.298 1.298 29 H -0.276 1.276 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.420 0.580 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.184 0.816 45 H 0.207 0.793 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -5.110 31.310 33.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.154 4.154 5 C 0.007 3.993 6 N -0.344 5.344 7 C 0.343 3.657 8 O -0.457 6.457 9 C -0.069 4.069 10 C -0.143 4.143 11 C -0.017 4.017 12 C -0.076 4.076 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.131 4.131 16 C -0.140 4.140 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.054 4.054 20 N -0.186 5.186 21 N -0.376 5.376 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.273 4.273 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.208 1.208 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.258 0.742 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.201 0.799 45 H 0.224 0.776 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.663 -4.489 30.392 32.861 hybrid contribution 0.903 0.018 -1.416 1.679 sum 12.565 -4.471 28.976 31.898 Atomic orbital electron populations 1.22252 0.96967 1.01069 1.00920 1.20460 0.93270 0.95212 0.85485 0.93740 1.21919 0.92172 1.02151 0.99128 1.21233 0.95701 0.96275 0.86091 1.45783 1.06960 1.55102 1.26546 1.18401 0.82965 0.79649 0.84673 1.90779 1.56693 1.47835 1.50397 1.20714 0.91095 0.99852 0.95195 1.22179 0.95535 0.98777 0.97849 1.19320 0.93906 0.95252 0.93216 1.18753 0.90250 1.01355 0.97218 1.21481 0.94086 0.99273 0.99383 1.21381 0.95234 0.99851 0.98323 1.21670 1.01337 0.96161 0.93949 1.21515 0.92531 0.99371 1.00590 1.21556 0.97305 0.97637 0.95428 1.22865 0.93130 0.98110 1.00842 1.23475 0.95819 0.93858 0.92245 1.67494 1.38643 1.07736 1.04727 1.42650 1.78399 1.10215 1.06299 1.19579 1.34423 0.94115 0.88401 0.90714 1.25528 1.03381 0.96912 1.01450 1.69815 1.52913 1.10185 1.29260 0.85277 0.77937 0.77267 0.79713 1.20830 1.22422 1.20205 0.94719 0.93651 0.90575 0.91076 0.87716 0.92482 0.94129 0.74172 0.84774 0.86569 0.84500 0.83463 0.82708 0.82743 0.79886 0.77636 0.79701 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.49 71.98 0.68 -4.46 16 2 C 0.16 6.34 2.89 44.99 0.13 6.47 16 3 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 4 C -0.12 -3.56 4.87 30.60 0.15 -3.41 16 5 C 0.13 4.72 5.56 86.38 0.48 5.20 16 6 N -0.69 -21.79 5.55 -465.64 -2.58 -24.38 16 7 C 0.56 19.63 7.81 86.88 0.68 20.31 16 8 O -0.58 -25.11 16.32 -3.76 -0.06 -25.17 16 9 C 0.07 1.91 6.75 41.85 0.28 2.19 16 10 C -0.12 -3.15 9.02 22.84 0.21 -2.94 16 11 C -0.01 -0.17 5.91 -19.86 -0.12 -0.29 16 12 C -0.08 -1.29 5.88 -20.04 -0.12 -1.40 16 13 C -0.12 -2.30 9.45 22.49 0.21 -2.09 16 14 C -0.13 -1.90 10.03 22.24 0.22 -1.68 16 15 C -0.11 -1.22 10.04 22.31 0.22 -1.00 16 16 C -0.12 -1.13 10.03 22.24 0.22 -0.91 16 17 C -0.10 -1.12 9.45 22.48 0.21 -0.91 16 18 C -0.13 -1.60 9.51 22.65 0.22 -1.39 16 19 C 0.11 1.47 11.17 84.75 0.95 2.42 16 20 N -0.47 -10.61 9.53 -185.19 -1.76 -12.38 16 21 N -0.73 -37.39 4.57 -322.93 -1.48 -38.87 16 22 C -0.23 -13.25 9.93 84.03 0.83 -12.42 16 23 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 25 N -0.97 -61.65 13.06 21.65 0.28 -61.36 16 26 Si 0.97 48.11 29.55 68.60 2.03 50.14 16 27 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 29 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 37 H 0.42 10.75 7.80 -92.71 -0.72 10.03 16 38 H 0.13 3.75 5.92 -2.91 -0.02 3.73 16 39 H 0.12 2.35 6.30 -2.91 -0.02 2.33 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.16 0.72 6.29 -2.91 -0.02 0.70 16 44 H 0.18 0.65 6.33 -2.91 -0.02 0.63 16 45 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 46 H 0.37 20.49 7.80 -92.70 -0.72 19.77 16 47 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -79.30 396.67 1.92 -77.38 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.44 Total: 35.29 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.93 Total: -0.65 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -5.54 Total: -136.99 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -79.30 1.92 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317409312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.688 kcal (2) G-P(sol) polarization free energy of solvation -79.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds