Wall clock time and date at job start Tue Mar 31 2020 23:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46999 * 2 1 4 4 C 1.53001 * 109.47067 * 239.99488 * 2 1 3 5 5 N 1.46902 * 109.47077 * 185.00028 * 4 2 1 6 6 C 1.46894 * 110.99741 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46991 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99710 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00073 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99910 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99798 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00157 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47066 * 89.99853 * 14 12 10 16 16 H 1.48505 * 109.46889 * 209.99744 * 14 12 10 17 17 H 1.48496 * 109.46946 * 329.99709 * 14 12 10 18 18 N 1.46503 * 109.46646 * 119.99774 * 2 1 3 19 19 C 1.46501 * 120.00038 * 60.00088 * 18 2 1 20 20 C 1.34770 * 119.99706 * 239.99621 * 18 2 1 21 21 O 1.21730 * 120.00350 * 5.64387 * 20 18 2 22 22 C 1.46389 * 119.99856 * 185.64100 * 20 18 2 23 23 C 1.36712 * 126.82593 * 7.01897 * 22 20 18 24 24 N 1.33218 * 107.96281 * 179.87397 * 23 22 20 25 25 C 1.31535 * 109.76158 * 0.40456 * 24 23 22 26 26 O 1.35205 * 125.49359 * 179.76832 * 25 24 23 27 27 N 1.34937 * 109.01163 * 359.74931 * 25 24 23 28 28 C 1.46502 * 126.54238 * 179.97438 * 27 25 24 29 29 H 1.08998 * 109.47020 * 300.00737 * 1 2 3 30 30 H 1.09003 * 109.46755 * 60.00288 * 1 2 3 31 31 H 1.08995 * 109.46999 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46825 * 65.00266 * 4 2 1 33 33 H 1.09001 * 109.47343 * 305.00279 * 4 2 1 34 34 H 1.00896 * 110.99884 * 303.95955 * 5 4 2 35 35 H 1.09002 * 109.47662 * 299.99730 * 6 5 4 36 36 H 1.09002 * 109.47355 * 60.00533 * 6 5 4 37 37 H 0.97001 * 120.00198 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00206 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47202 * 95.72322 * 19 18 2 40 40 H 1.08995 * 109.46900 * 215.72544 * 19 18 2 41 41 H 1.09003 * 109.47427 * 335.72814 * 19 18 2 42 42 H 1.08007 * 126.01912 * 359.97438 * 23 22 20 43 43 H 0.96698 * 114.00282 * 269.98211 * 26 25 24 44 44 H 1.08998 * 109.47667 * 264.36043 * 28 27 25 45 45 H 1.09005 * 109.46798 * 24.35891 * 28 27 25 46 46 H 1.09005 * 109.47454 * 144.35236 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5041 -0.8268 -1.1903 6 6 4.0304 -1.5150 -2.3766 7 6 5.5317 -1.6046 -2.2806 8 8 6.1065 -1.1412 -1.3183 9 7 6.2355 -2.1997 -3.2639 10 6 7.6012 -2.2817 -3.1763 11 1 8.1131 -1.8691 -2.3195 12 6 8.3268 -2.8957 -4.1898 13 7 9.6359 -2.9739 -4.1060 14 14 7.4415 -3.6089 -5.6720 15 1 7.3236 -2.5691 -6.7257 16 1 8.2115 -4.7636 -6.2002 17 1 6.0857 -4.0608 -5.2686 18 7 2.0183 -0.6906 1.1963 19 6 1.6643 -2.0932 1.4281 20 6 2.7931 -0.0356 2.0833 21 8 3.0030 1.1555 1.9454 22 6 3.3824 -0.7565 3.2129 23 6 3.3516 -2.1060 3.4296 24 7 4.0034 -2.3549 4.5645 25 6 4.4392 -1.2275 5.0834 26 8 5.1368 -1.1117 6.2358 27 7 4.0783 -0.2053 4.2800 28 6 4.3654 1.2154 4.4935 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7199 -1.2951 34 1 3.9280 0.0824 -1.0823 35 1 3.6096 -2.5191 -2.4307 36 1 3.7559 -0.9572 -3.2719 37 1 5.7758 -2.5707 -4.0332 38 1 10.1425 -3.4022 -4.8137 39 1 2.4652 -2.7354 1.0617 40 1 1.5240 -2.2607 2.4959 41 1 0.7404 -2.3270 0.8991 42 1 2.8829 -2.8412 2.7921 43 1 4.5838 -0.9922 7.0201 44 1 3.5129 1.6894 4.9800 45 1 5.2473 1.3167 5.1262 46 1 4.5500 1.6972 3.5333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319508657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:28 Heat of formation + Delta-G solvation = -43.866649 kcal Electronic energy + Delta-G solvation = -30101.689314 eV Core-core repulsion = 25835.170078 eV Total energy + Delta-G solvation = -4266.519235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.37201 -40.82223 -40.23813 -38.41299 -37.91841 -36.27685 -35.73876 -35.01686 -33.76474 -33.07200 -29.98107 -29.06156 -28.50787 -27.73575 -26.59688 -24.76253 -24.12406 -22.87422 -21.78627 -21.28275 -20.50848 -20.13444 -19.57843 -18.12590 -17.96530 -17.84869 -17.37402 -16.97413 -16.80772 -16.42564 -16.12602 -15.65296 -15.42377 -15.36565 -15.23072 -15.00148 -14.79234 -14.51519 -14.31920 -14.03819 -13.88409 -13.78362 -13.72129 -13.26203 -13.22670 -13.12497 -12.87291 -12.76822 -12.51995 -12.42148 -12.38252 -11.97676 -11.70801 -11.51788 -11.38223 -10.94653 -10.86366 -10.45381 -10.25715 -9.69265 -9.48048 -9.26381 -8.41965 -6.03492 0.13205 1.12665 1.29634 1.35829 1.45055 1.54565 1.96756 2.10885 2.23116 2.26274 2.74075 2.80126 3.14562 3.37840 3.51776 3.78169 3.87851 3.94442 4.14633 4.21511 4.24147 4.27670 4.30743 4.37591 4.48125 4.56231 4.58172 4.70308 4.73840 4.78707 4.86865 4.91028 5.00996 5.13698 5.31112 5.35738 5.51957 5.54951 5.64539 5.90124 6.07713 6.31610 6.34795 6.54646 6.59550 6.68739 6.87925 7.11584 7.39505 7.97978 8.76190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003019 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.490251 B = 9272.086913 C =10861.398432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 H 0.074 0.926 4 C 0.051 3.949 5 N -0.683 5.683 6 C 0.066 3.934 7 C 0.446 3.554 8 O -0.618 6.618 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.049 0.951 12 C -0.017 4.017 13 N -0.937 5.937 14 Si 0.969 3.031 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.227 1.227 18 N -0.572 5.572 19 C 0.053 3.947 20 C 0.594 3.406 21 O -0.587 6.587 22 C -0.094 4.094 23 C 0.040 3.960 24 N -0.519 5.519 25 C 0.394 3.606 26 O -0.442 6.442 27 N -0.435 5.435 28 C 0.068 3.932 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.334 0.666 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.428 0.572 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.994 2.857 11.095 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.079 4.079 5 N -0.314 5.314 6 C -0.066 4.066 7 C 0.234 3.766 8 O -0.503 6.503 9 N -0.232 5.232 10 C -0.460 4.460 11 H 0.067 0.933 12 C -0.216 4.216 13 N -0.578 5.578 14 Si 0.789 3.211 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.151 1.151 18 N -0.302 5.302 19 C -0.088 4.088 20 C 0.383 3.617 21 O -0.470 6.470 22 C -0.210 4.210 23 C -0.113 4.113 24 N -0.249 5.249 25 C 0.095 3.905 26 O -0.246 6.246 27 N -0.128 5.128 28 C -0.074 4.074 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.241 0.759 43 H 0.289 0.711 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.627 2.521 12.117 28.459 hybrid contribution 0.475 1.332 -1.200 1.855 sum -25.152 3.852 10.917 27.688 Atomic orbital electron populations 1.22035 0.91294 1.04101 1.03207 1.21254 0.95841 0.96469 0.82867 0.90778 1.22524 0.86387 1.02448 0.96497 1.60035 1.05938 1.26070 1.39404 1.21625 0.89041 1.02530 0.93446 1.21155 0.91053 0.81452 0.82959 1.90572 1.73092 1.52034 1.34591 1.42010 1.06004 1.53982 1.21229 1.18980 0.82097 1.37634 1.07267 0.93308 1.26187 0.96214 0.97210 1.01946 1.69820 1.07640 1.44492 1.35809 0.85307 0.79786 0.78768 0.77263 1.18130 1.20033 1.15051 1.47231 1.48405 1.13350 1.21186 1.22607 1.02674 0.80001 1.03542 1.16703 0.78176 0.85482 0.81311 1.90745 1.62959 1.16261 1.76995 1.20723 1.09801 0.94990 0.95478 1.24012 0.99052 0.93466 0.94769 1.70348 1.16744 1.24950 1.12817 1.20410 0.97420 0.82653 0.90049 1.84795 1.32934 1.93282 1.13622 1.45793 1.39365 1.09579 1.18092 1.22342 1.04165 0.76095 1.04752 0.92602 0.89621 0.89775 0.92109 0.88096 0.84865 0.86226 0.90510 0.77357 0.91139 0.91764 0.89120 0.87248 0.75889 0.71093 0.88101 0.87399 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.18 71.98 0.66 -0.87 16 2 C 0.14 2.53 2.87 44.99 0.13 2.65 16 3 H 0.07 1.79 6.91 -2.39 -0.02 1.77 16 4 C 0.05 0.88 4.98 86.30 0.43 1.31 16 5 N -0.68 -19.64 5.85 -517.92 -3.03 -22.67 16 6 C 0.07 1.93 6.17 85.56 0.53 2.46 16 7 C 0.45 20.52 7.82 87.66 0.69 21.20 16 8 O -0.62 -35.97 15.78 -3.07 -0.05 -36.02 16 9 N -0.59 -28.24 5.09 -306.98 -1.56 -29.80 16 10 C -0.33 -19.90 10.16 84.04 0.85 -19.04 16 11 H 0.05 3.54 7.39 -2.91 -0.02 3.52 16 12 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 13 N -0.94 -57.75 13.96 21.66 0.30 -57.45 16 14 Si 0.97 39.01 27.74 68.60 1.90 40.91 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 18 N -0.57 -12.11 2.49 -827.61 -2.06 -14.17 16 19 C 0.05 0.74 7.79 127.77 1.00 1.73 16 20 C 0.59 17.26 7.62 86.37 0.66 17.92 16 21 O -0.59 -20.41 14.35 -4.45 -0.06 -20.47 16 22 C -0.09 -2.68 6.76 39.80 0.27 -2.41 16 23 C 0.04 1.06 9.78 84.13 0.82 1.88 16 24 N -0.52 -15.13 11.22 -313.66 -3.52 -18.65 16 25 C 0.39 10.38 9.01 179.99 1.62 12.00 16 26 O -0.44 -8.64 13.44 -84.86 -1.14 -9.78 16 27 N -0.44 -11.60 3.20 -651.99 -2.09 -13.69 16 28 C 0.07 1.43 10.59 127.77 1.35 2.78 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.53 6.67 -2.39 -0.02 0.51 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 1.29 7.84 -2.39 -0.02 1.28 16 34 H 0.33 11.63 8.43 -89.70 -0.76 10.87 16 35 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.39 15.20 5.76 -92.71 -0.53 14.66 16 38 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.06 1.06 7.41 -2.39 -0.02 1.05 16 40 H 0.09 1.12 5.29 -2.39 -0.01 1.11 16 41 H 0.11 0.77 6.44 -2.39 -0.02 0.75 16 42 H 0.23 4.38 4.39 -2.91 -0.01 4.37 16 43 H 0.43 2.96 9.06 -74.06 -0.67 2.29 16 44 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.11 1.80 8.02 -2.38 -0.02 1.79 16 46 H 0.08 2.16 6.69 -2.38 -0.02 2.15 16 Total: -1.00 -94.86 379.52 -2.78 -97.64 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.95 Total: 43.04 kcal Atomic # 6 Polarization: 31.63 SS G_CDS: 9.47 Total: 41.10 kcal Atomic # 7 Polarization: -144.47 SS G_CDS: -11.95 Total: -156.43 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -1.25 Total: -66.27 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Total: -94.86 -2.78 -97.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319508657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.775 kcal (2) G-P(sol) polarization free energy of solvation -94.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds