Wall clock time and date at job start Tue Mar 31 2020 23:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.53005 * 109.47223 * 120.00092 * 2 1 3 5 5 N 1.46901 * 109.47124 * 175.00310 * 4 2 1 6 6 C 1.46899 * 110.99658 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46973 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00078 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99932 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00346 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99824 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99860 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00044 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47406 * 90.00274 * 14 12 10 16 16 H 1.48507 * 109.47367 * 210.00097 * 14 12 10 17 17 H 1.48504 * 109.47455 * 329.99876 * 14 12 10 18 18 N 1.46504 * 109.47329 * 239.99804 * 2 1 3 19 19 C 1.46500 * 119.99767 * 300.00382 * 18 2 1 20 20 C 1.34770 * 119.99730 * 119.99723 * 18 2 1 21 21 O 1.21729 * 120.00597 * 5.64346 * 20 18 2 22 22 C 1.46380 * 119.99851 * 185.64048 * 20 18 2 23 23 C 1.36717 * 126.82584 * 7.02296 * 22 20 18 24 24 N 1.33226 * 107.96434 * 179.97438 * 23 22 20 25 25 C 1.31537 * 109.76156 * 0.02562 * 24 23 22 26 26 O 1.35206 * 125.49054 * 180.02562 * 25 24 23 27 27 N 1.34942 * 109.01266 * 359.76551 * 25 24 23 28 28 C 1.46501 * 126.54590 * 180.26790 * 27 25 24 29 29 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47510 * 299.99775 * 1 2 3 31 31 H 1.09000 * 109.47434 * 60.00136 * 1 2 3 32 32 H 1.09006 * 109.46585 * 295.00037 * 4 2 1 33 33 H 1.09002 * 109.47151 * 54.99614 * 4 2 1 34 34 H 1.00895 * 111.00145 * 56.03905 * 5 4 2 35 35 H 1.09002 * 109.46643 * 299.99258 * 6 5 4 36 36 H 1.09000 * 109.47519 * 59.99577 * 6 5 4 37 37 H 0.97003 * 120.00233 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00133 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47614 * 95.72660 * 19 18 2 40 40 H 1.08996 * 109.47142 * 335.72043 * 19 18 2 41 41 H 1.09001 * 109.46604 * 215.72625 * 19 18 2 42 42 H 1.08002 * 126.01876 * 359.94705 * 23 22 20 43 43 H 0.96701 * 113.99995 * 90.03329 * 26 25 24 44 44 H 1.09001 * 109.46812 * 264.45632 * 28 27 25 45 45 H 1.09001 * 109.46835 * 24.44948 * 28 27 25 46 46 H 1.09000 * 109.47353 * 144.45368 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5159 2.3762 7 6 5.5317 -1.6043 2.2808 8 8 6.1067 -1.1393 1.3194 9 7 6.2354 -2.2000 3.2638 10 6 7.6012 -2.2808 3.1768 11 1 8.1133 -1.8668 2.3208 12 6 8.3269 -2.8946 4.1905 13 7 9.6361 -2.9716 4.1073 14 14 7.4415 -3.6088 5.6721 15 1 7.0914 -5.0267 5.4036 16 1 8.3275 -3.5344 6.8616 17 1 6.2016 -2.8330 5.9293 18 7 2.0184 -0.6907 -1.1962 19 6 1.6644 -2.0932 -1.4279 20 6 2.7931 -0.0356 -2.0833 21 8 3.1721 1.0957 -1.8418 22 6 3.1791 -0.6847 -3.3373 23 6 2.7300 -1.8863 -3.8101 24 7 3.3238 -2.1151 -4.9806 25 6 4.1287 -1.1169 -5.2736 26 8 4.8879 -1.0220 -6.3884 27 7 4.0701 -0.2002 -4.2851 28 6 4.8075 1.0642 -4.2231 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9280 0.0826 1.0823 35 1 3.7557 -0.9587 3.2719 36 1 3.6094 -2.5199 2.4295 37 1 5.7756 -2.5715 4.0329 38 1 10.1427 -3.3997 4.8151 39 1 0.7956 -2.1451 -2.0840 40 1 1.4303 -2.5709 -0.4766 41 1 2.5041 -2.6073 -1.8957 42 1 2.0195 -2.5359 -3.3207 43 1 4.4471 -0.5823 -7.1282 44 1 5.7163 0.9264 -3.6373 45 1 5.0704 1.3813 -5.2323 46 1 4.1845 1.8255 -3.7537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319508661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:33 Heat of formation + Delta-G solvation = -7.737171 kcal Electronic energy + Delta-G solvation = -30048.044602 eV Core-core repulsion = 25783.092059 eV Total energy + Delta-G solvation = -4264.952543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43903 -39.87226 -38.43986 -37.58842 -36.88361 -35.00620 -34.13068 -33.81071 -32.20463 -31.62071 -29.07537 -27.76957 -27.68749 -26.90187 -25.05144 -23.65054 -22.96888 -21.95596 -20.90208 -19.59110 -19.28359 -18.74403 -18.29199 -17.30869 -16.94519 -16.64964 -15.96218 -15.83528 -15.50036 -15.16157 -14.87322 -14.55233 -14.39391 -14.29618 -14.01866 -13.86854 -13.34325 -13.22906 -13.08791 -12.89676 -12.83060 -12.71824 -12.55310 -12.42358 -12.20754 -12.12404 -11.71053 -11.63164 -11.59640 -11.15152 -10.99017 -10.59075 -10.42652 -9.96640 -9.96381 -9.84613 -9.55712 -8.78751 -8.61308 -8.52672 -8.17616 -8.11367 -6.29520 -3.80895 1.08430 2.00393 2.47469 2.95237 3.02598 3.07178 3.15207 3.26866 3.60457 3.76317 4.03323 4.11393 4.36293 4.59771 4.70560 4.81218 4.83363 4.91136 4.97582 5.08275 5.12542 5.16075 5.23087 5.28658 5.35863 5.40973 5.44543 5.47131 5.62152 5.65622 5.76968 5.80687 5.81773 5.91821 5.94982 6.18013 6.27038 6.45438 7.09506 7.24407 7.28706 7.57421 7.60247 7.61316 8.09652 8.16424 8.61710 8.96955 9.44108 9.85189 10.83775 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.002930 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.774771 B = 9553.948443 C =11064.975829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.102 0.898 4 C 0.046 3.954 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.450 3.550 8 O -0.562 6.562 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.881 3.119 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.578 5.578 19 C 0.064 3.936 20 C 0.603 3.397 21 O -0.546 6.546 22 C -0.068 4.068 23 C 0.032 3.968 24 N -0.490 5.490 25 C 0.392 3.608 26 O -0.438 6.438 27 N -0.426 5.426 28 C 0.068 3.932 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.353 0.647 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.202 0.798 43 H 0.401 0.599 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.316 5.048 -12.681 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.120 0.880 4 C -0.084 4.084 5 N -0.296 5.296 6 C -0.083 4.083 7 C 0.235 3.765 8 O -0.443 6.443 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.136 0.864 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.309 5.309 19 C -0.079 4.079 20 C 0.392 3.608 21 O -0.425 6.425 22 C -0.184 4.184 23 C -0.121 4.121 24 N -0.218 5.218 25 C 0.093 3.907 26 O -0.239 6.239 27 N -0.118 5.118 28 C -0.074 4.074 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.173 0.827 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.219 0.781 43 H 0.258 0.742 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.017 4.543 -13.765 25.531 hybrid contribution -0.553 0.848 2.135 2.363 sum -21.570 5.391 -11.630 25.092 Atomic orbital electron populations 1.22102 0.94273 1.02669 1.02666 1.21134 0.93592 0.98015 0.83449 0.87994 1.22379 0.89643 1.00608 0.95774 1.59994 1.03085 1.27100 1.39399 1.21696 0.95025 0.99947 0.91679 1.19725 0.87991 0.84044 0.84707 1.90586 1.70996 1.50242 1.32509 1.42202 1.07843 1.53238 1.19861 1.19427 0.79597 1.35926 1.08347 0.86377 1.25041 0.95438 0.97690 0.98044 1.69626 1.05069 1.43417 1.34113 0.86658 0.79587 0.79996 0.83035 1.19607 1.20223 1.19565 1.47062 1.50253 1.12080 1.21514 1.22355 1.00878 0.81832 1.02826 1.16477 0.77910 0.84932 0.81485 1.90785 1.54858 1.19090 1.77718 1.20527 1.02372 0.99731 0.95792 1.23539 1.01487 0.94623 0.92500 1.70337 1.10526 1.24021 1.16961 1.20252 0.96125 0.87114 0.87210 1.84861 1.38676 1.80586 1.19764 1.45623 1.32092 1.17418 1.16677 1.22261 0.98065 0.83150 1.03888 0.91929 0.91206 0.91969 0.94241 0.90628 0.82733 0.93906 0.89602 0.79747 0.91640 0.92230 0.90307 0.89466 0.78137 0.74157 0.89521 0.89634 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.19 37.16 0.34 -0.73 16 2 C 0.14 1.41 2.87 -67.93 -0.20 1.22 16 3 H 0.10 1.21 6.91 -51.93 -0.36 0.85 16 4 C 0.05 0.49 4.95 -3.82 -0.02 0.47 16 5 N -0.66 -10.20 5.85 -115.05 -0.67 -10.87 16 6 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 7 C 0.45 10.39 7.82 -10.99 -0.09 10.30 16 8 O -0.56 -15.58 15.78 5.54 0.09 -15.49 16 9 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 10 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 11 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.15 13.96 55.50 0.77 -25.38 16 14 Si 0.88 19.55 27.73 -169.99 -4.71 14.83 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 N -0.58 -6.42 2.48 -175.59 -0.44 -6.86 16 19 C 0.06 0.53 7.69 59.85 0.46 0.99 16 20 C 0.60 8.48 7.62 -12.99 -0.10 8.38 16 21 O -0.55 -9.01 14.35 5.16 0.07 -8.94 16 22 C -0.07 -0.91 6.76 -81.97 -0.55 -1.47 16 23 C 0.03 0.39 9.78 -17.50 -0.17 0.22 16 24 N -0.49 -6.72 11.22 -14.62 -0.16 -6.88 16 25 C 0.39 5.00 9.01 -89.60 -0.81 4.19 16 26 O -0.44 -4.32 13.44 -17.31 -0.23 -4.55 16 27 N -0.43 -5.50 3.20 -122.12 -0.39 -5.89 16 28 C 0.07 0.73 10.59 59.85 0.63 1.36 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.70 6.87 -51.93 -0.36 0.34 16 34 H 0.35 6.16 8.43 -39.29 -0.33 5.83 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.06 0.34 7.40 -51.93 -0.38 -0.05 16 40 H 0.08 0.58 6.54 -51.93 -0.34 0.24 16 41 H 0.09 0.84 5.29 -51.93 -0.27 0.56 16 42 H 0.20 1.75 4.39 -52.49 -0.23 1.52 16 43 H 0.40 1.57 9.06 45.56 0.41 1.99 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 46 H 0.10 1.16 6.70 -51.93 -0.35 0.81 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -38.99 379.53 -6.14 -45.13 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.35 Total: 15.72 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -0.77 Total: 17.82 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.95 Total: -70.24 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.07 Total: -28.98 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.99 -6.14 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319508661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.395 kcal (2) G-P(sol) polarization free energy of solvation -38.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds