Wall clock time and date at job start Tue Mar 31 2020 23:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.53005 * 109.47223 * 120.00092 * 2 1 3 5 5 N 1.46901 * 109.47124 * 175.00310 * 4 2 1 6 6 C 1.46899 * 110.99658 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46973 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00078 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99932 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00346 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99824 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99860 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00044 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47406 * 90.00274 * 14 12 10 16 16 H 1.48507 * 109.47367 * 210.00097 * 14 12 10 17 17 H 1.48504 * 109.47455 * 329.99876 * 14 12 10 18 18 N 1.46504 * 109.47329 * 239.99804 * 2 1 3 19 19 C 1.46500 * 119.99767 * 300.00382 * 18 2 1 20 20 C 1.34770 * 119.99730 * 119.99723 * 18 2 1 21 21 O 1.21729 * 120.00597 * 5.64346 * 20 18 2 22 22 C 1.46380 * 119.99851 * 185.64048 * 20 18 2 23 23 C 1.36717 * 126.82584 * 7.02296 * 22 20 18 24 24 N 1.33226 * 107.96434 * 179.97438 * 23 22 20 25 25 C 1.31537 * 109.76156 * 0.02562 * 24 23 22 26 26 O 1.35206 * 125.49054 * 180.02562 * 25 24 23 27 27 N 1.34942 * 109.01266 * 359.76551 * 25 24 23 28 28 C 1.46501 * 126.54590 * 180.26790 * 27 25 24 29 29 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47510 * 299.99775 * 1 2 3 31 31 H 1.09000 * 109.47434 * 60.00136 * 1 2 3 32 32 H 1.09006 * 109.46585 * 295.00037 * 4 2 1 33 33 H 1.09002 * 109.47151 * 54.99614 * 4 2 1 34 34 H 1.00895 * 111.00145 * 56.03905 * 5 4 2 35 35 H 1.09002 * 109.46643 * 299.99258 * 6 5 4 36 36 H 1.09000 * 109.47519 * 59.99577 * 6 5 4 37 37 H 0.97003 * 120.00233 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00133 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47614 * 95.72660 * 19 18 2 40 40 H 1.08996 * 109.47142 * 335.72043 * 19 18 2 41 41 H 1.09001 * 109.46604 * 215.72625 * 19 18 2 42 42 H 1.08002 * 126.01876 * 359.94705 * 23 22 20 43 43 H 0.96701 * 113.99995 * 90.03329 * 26 25 24 44 44 H 1.09001 * 109.46812 * 264.45632 * 28 27 25 45 45 H 1.09001 * 109.46835 * 24.44948 * 28 27 25 46 46 H 1.09000 * 109.47353 * 144.45368 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5159 2.3762 7 6 5.5317 -1.6043 2.2808 8 8 6.1067 -1.1393 1.3194 9 7 6.2354 -2.2000 3.2638 10 6 7.6012 -2.2808 3.1768 11 1 8.1133 -1.8668 2.3208 12 6 8.3269 -2.8946 4.1905 13 7 9.6361 -2.9716 4.1073 14 14 7.4415 -3.6088 5.6721 15 1 7.0914 -5.0267 5.4036 16 1 8.3275 -3.5344 6.8616 17 1 6.2016 -2.8330 5.9293 18 7 2.0184 -0.6907 -1.1962 19 6 1.6644 -2.0932 -1.4279 20 6 2.7931 -0.0356 -2.0833 21 8 3.1721 1.0957 -1.8418 22 6 3.1791 -0.6847 -3.3373 23 6 2.7300 -1.8863 -3.8101 24 7 3.3238 -2.1151 -4.9806 25 6 4.1287 -1.1169 -5.2736 26 8 4.8879 -1.0220 -6.3884 27 7 4.0701 -0.2002 -4.2851 28 6 4.8075 1.0642 -4.2231 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9280 0.0826 1.0823 35 1 3.7557 -0.9587 3.2719 36 1 3.6094 -2.5199 2.4295 37 1 5.7756 -2.5715 4.0329 38 1 10.1427 -3.3997 4.8151 39 1 0.7956 -2.1451 -2.0840 40 1 1.4303 -2.5709 -0.4766 41 1 2.5041 -2.6073 -1.8957 42 1 2.0195 -2.5359 -3.3207 43 1 4.4471 -0.5823 -7.1282 44 1 5.7163 0.9264 -3.6373 45 1 5.0704 1.3813 -5.2323 46 1 4.1845 1.8255 -3.7537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319508661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:32 Heat of formation + Delta-G solvation = -44.214941 kcal Electronic energy + Delta-G solvation = -30049.626397 eV Core-core repulsion = 25783.092059 eV Total energy + Delta-G solvation = -4266.534338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.37281 -40.81754 -40.24614 -38.41615 -37.91240 -36.28321 -35.74666 -35.01586 -33.77518 -33.06119 -29.98190 -29.06987 -28.51005 -27.74225 -26.60674 -24.75730 -24.14021 -22.86122 -21.77727 -21.29511 -20.50672 -20.14158 -19.58467 -18.21734 -17.95760 -17.83171 -17.35301 -16.92673 -16.77668 -16.41560 -16.21637 -15.67881 -15.42811 -15.37418 -15.20465 -15.00842 -14.77407 -14.48515 -14.31476 -14.02968 -13.89883 -13.76558 -13.71454 -13.28204 -13.21476 -13.14088 -12.92888 -12.77757 -12.49275 -12.42511 -12.40458 -11.98643 -11.72482 -11.52747 -11.38727 -10.96050 -10.85322 -10.46610 -10.26624 -9.67654 -9.47354 -9.27225 -8.42967 -6.04496 0.13783 1.12621 1.28811 1.35334 1.44134 1.54518 1.95323 2.09569 2.22230 2.30121 2.73458 2.79536 3.13250 3.37306 3.50776 3.78333 3.86296 3.94886 4.13708 4.20355 4.20947 4.26620 4.31559 4.38236 4.47235 4.55380 4.56397 4.69487 4.74584 4.77443 4.86955 4.91117 5.03252 5.15036 5.31559 5.35446 5.51013 5.53330 5.65453 5.89126 6.07411 6.31769 6.35819 6.53981 6.58550 6.68135 6.86741 7.13307 7.38298 7.96622 8.75134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.002930 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.774771 B = 9553.948443 C =11064.975829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.074 0.926 4 C 0.049 3.951 5 N -0.683 5.683 6 C 0.065 3.935 7 C 0.445 3.555 8 O -0.619 6.619 9 N -0.590 5.590 10 C -0.331 4.331 11 H 0.049 0.951 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.229 1.229 18 N -0.572 5.572 19 C 0.055 3.945 20 C 0.592 3.408 21 O -0.586 6.586 22 C -0.098 4.098 23 C 0.043 3.957 24 N -0.516 5.516 25 C 0.394 3.606 26 O -0.442 6.442 27 N -0.436 5.436 28 C 0.070 3.930 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.335 0.665 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.232 0.768 43 H 0.427 0.573 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.486 3.346 -10.838 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.080 4.080 5 N -0.315 5.315 6 C -0.067 4.067 7 C 0.234 3.766 8 O -0.503 6.503 9 N -0.232 5.232 10 C -0.460 4.460 11 H 0.067 0.933 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.789 3.211 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.152 1.152 18 N -0.302 5.302 19 C -0.086 4.086 20 C 0.381 3.619 21 O -0.469 6.469 22 C -0.213 4.213 23 C -0.110 4.110 24 N -0.246 5.246 25 C 0.095 3.905 26 O -0.247 6.247 27 N -0.129 5.129 28 C -0.071 4.071 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.248 0.752 43 H 0.289 0.711 44 H 0.085 0.915 45 H 0.139 0.861 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.259 2.826 -11.929 28.077 hybrid contribution 0.819 1.423 1.398 2.156 sum -24.440 4.248 -10.531 26.950 Atomic orbital electron populations 1.22027 0.91143 1.04172 1.03214 1.21250 0.95778 0.96490 0.82907 0.90792 1.22525 0.86391 1.02428 0.96626 1.60020 1.05953 1.26160 1.39356 1.21629 0.89086 1.02517 0.93445 1.21149 0.91056 0.81433 0.82999 1.90568 1.73089 1.51967 1.34687 1.42012 1.06031 1.54005 1.21165 1.18980 0.82101 1.37605 1.07328 0.93284 1.26186 0.96216 0.97211 1.01932 1.69819 1.07616 1.44378 1.35889 0.85305 0.79411 0.79768 0.76617 1.17951 1.20049 1.15235 1.47228 1.48973 1.13045 1.20997 1.22582 1.01493 0.79983 1.04541 1.16755 0.78223 0.84753 0.82190 1.90752 1.56691 1.20771 1.78647 1.20749 1.03664 1.00701 0.96212 1.24078 1.01052 0.94154 0.91718 1.70367 1.11641 1.24678 1.17890 1.20449 0.95524 0.86824 0.87743 1.84811 1.38919 1.81044 1.19915 1.45804 1.32329 1.17955 1.16773 1.22293 0.96758 0.82460 1.05631 0.89841 0.89714 0.92443 0.92166 0.88090 0.84761 0.90620 0.86208 0.77357 0.91118 0.88901 0.88457 0.90956 0.75237 0.71126 0.91550 0.86085 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 71.98 0.66 -0.83 16 2 C 0.14 2.53 2.87 44.99 0.13 2.66 16 3 H 0.07 1.78 6.91 -2.39 -0.02 1.77 16 4 C 0.05 0.87 4.95 86.30 0.43 1.30 16 5 N -0.68 -19.98 5.85 -517.90 -3.03 -23.01 16 6 C 0.07 1.94 6.17 85.56 0.53 2.47 16 7 C 0.45 20.61 7.82 87.66 0.69 21.30 16 8 O -0.62 -36.08 15.78 -3.08 -0.05 -36.13 16 9 N -0.59 -28.30 5.09 -306.98 -1.56 -29.86 16 10 C -0.33 -19.91 10.16 84.04 0.85 -19.05 16 11 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -57.58 13.96 21.66 0.30 -57.28 16 14 Si 0.97 39.00 27.73 68.60 1.90 40.90 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 18 N -0.57 -12.09 2.48 -827.64 -2.06 -14.15 16 19 C 0.06 0.77 7.69 127.77 0.98 1.75 16 20 C 0.59 17.15 7.62 86.36 0.66 17.81 16 21 O -0.59 -20.70 14.35 -4.44 -0.06 -20.77 16 22 C -0.10 -2.69 6.76 39.80 0.27 -2.43 16 23 C 0.04 1.03 9.78 84.13 0.82 1.85 16 24 N -0.52 -13.96 11.22 -313.65 -3.52 -17.48 16 25 C 0.39 10.03 9.01 179.99 1.62 11.65 16 26 O -0.44 -8.42 13.44 -84.87 -1.14 -9.56 16 27 N -0.44 -11.64 3.20 -651.99 -2.09 -13.73 16 28 C 0.07 1.59 10.59 127.77 1.35 2.95 16 29 H 0.08 0.53 7.67 -2.39 -0.02 0.51 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.10 1.31 6.87 -2.39 -0.02 1.29 16 34 H 0.33 11.87 8.43 -89.70 -0.76 11.12 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 38 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.09 0.69 7.40 -2.39 -0.02 0.68 16 40 H 0.10 1.00 6.54 -2.39 -0.02 0.99 16 41 H 0.07 1.26 5.29 -2.39 -0.01 1.25 16 42 H 0.23 3.59 4.39 -2.91 -0.01 3.58 16 43 H 0.43 2.80 9.06 -74.06 -0.67 2.13 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.12 1.75 8.03 -2.39 -0.02 1.73 16 46 H 0.09 2.33 6.70 -2.39 -0.02 2.32 16 Total: -1.00 -94.68 379.53 -2.80 -97.48 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -0.95 Total: 42.66 kcal Atomic # 6 Polarization: 31.45 SS G_CDS: 9.46 Total: 40.91 kcal Atomic # 7 Polarization: -143.54 SS G_CDS: -11.95 Total: -155.50 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: -1.25 Total: -66.45 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -94.68 -2.80 -97.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319508661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.264 kcal (2) G-P(sol) polarization free energy of solvation -94.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds